sec61b (sec61b,LOC102796100)


Basic Information

Item Value
gene id sec61b
gene name sec61b,LOC102796100
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21008013 ~ 21011414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU99269
ACAAGCGTCAGCTTTGTGGGATCTCTTCTCAATTTTTGACCAAATCACACACCGACTGTCTGCTGTTCATTGGAAGTGGACATCAACTTGAAGAGGGGCTCAGGGTTTCACCTTGcatcagaaaaataaaacaaaatgCCTGGACCAGCAGCAAGTGCAACCAATGTTGGGGCATCTAGCCGTTCCCCCAGTAAGACGGTGGCTCCCCGTGCAGCAGGCTCCACCGTCAGACAGAGGAAAGCTACCAGCAGTGGTACACGCAGCGGTGGCAGGACCACCGGATCGGCAGGCACTGGCGGCATGTGGCGCTTCTACACAGAAGACTCGCCAGGCCTCAAAGTCGGCCCCGTGCCAGTGCTGGTGATGAGTTTGCTCTTCATTGCATCTGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCTTAAACTCCACCCGATGACCTCTGACCCTCCACCTCCATCTTTTTAACACATCGGACCTGGACCAAACAACAAATGAACAACAATCTCACTCCCCTGGTTCCCTTCTGCACTTTCACTACAACACCCACAGACATACAAGACAcacaaacttgtttttttatttaaccatttCAGTACATGATCATCATCTGCATTGATGTTGGTATCCACCCTTTTGCCCTTCCTGTATTTTTAAGATCTGAAGGGGTGAACAGGAGGGAGTCACGCTCACCCATCTCAGTTGAAATGTcttagtttgtatgtgtgtgtgtatgtggcccTCCCTCCAAGCGGCAGTATGTTCCCGCCACTGCTGCAAAAAGGTTCAGTGCAGTACCTAAGGACATTGATGTTTTCAGGCCCCAGCAAACATTTCCTCTTGTAGCCTGAAGTGCATTTTTTGTTAAAAGCATTTGTA
>XM_039805670.1
TGCAGTCGTGTCCTTTTTAGACAAGCGTCAGCTTTGTGGGATCTCTTCTCAATTTTTGACCAAATCACACACCGACTGTCTGCTGTTCATTGGAAGTGGACATCAACTTGAAGAGGGGCTCAGGGTTTCACCTTGcatcagaaaaataaaacaaaatgCCTGGACCAGCAGCAAGTGCAACCAATGTTGGGGCATCTAGCCGTTCCCCCAGTAAGACGGTGGCTCCCCGTGCAGCAGGCTCCACCGTCAGACAGAGGAAAGCTACCAGCAGTGGTACACGCAGCGGTGGCAGGACCACCGGATCGGCAGGCACTGGCGGCATGTGGCGCTTCTACACAGAAGACTCGCCAGGCCTCAAAGTCGGCCCCGTGCCAGTGCTGGTGATGAGTTTGCTCTTCATTGCATCTGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCTTAAACTCCACCCGATGACCTCTGACCCTCCACCTCCATCTTTTTAACACATCGGACCTGGACCAAACAACAAATGAACAACAATCTCACTCCCCTGGTTCCCTTCTGCACTTTCACTACAACACCCACAGACATACAAGACAcacaaacttgtttttttatttaaccatttCAGTACATGATCATCATCTGCATTGATGTTGGTATCCACCCTTTTGCCCTTCCTGTATTTTTAAGATCTGAAGGGGTGAACAGGAGGGAGTCACGCTCACCCATCTCAGTTGAAATGTcttagtttgtatgtgtgtgtgtatgtggcccTCCCTCCAAGCGGCAGTATGTTCCCGCCACTGCTGCAAAAAGGTTCAGTGCAGTACCTAAGGACATTGATGTTTTCAGGCCCCAGCAAACATTTCCTCTTGTAGCCTGAAGTGCATTTTTTGTTAAAAGCATTTGTACAAATGTAATTGTAATATTGtacaataaaaaagtaaaaatcaa

Function

symbol description
sec61b Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be part of Sec61 translocon complex. Predicted to be active in membrane. Is expressed in axis; epithalamus; hatching gland; notochord; and polster. Orthologous to human SEC61B (SEC61 translocon subunit beta).

NR:

description
transport protein Sec61 subunit beta

GO: NA

KEGG:

id description
K09481 SEC61B, SBH2; protein transport protein SEC61 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU99269 False 883 TUCP 0.49 4 21008033 21011371
XM_039805670.1 True 946 mRNA 0.48 4 21008013 21011414

Neighbor

gene id symbol gene type direction distance location
LOC120562142 NA coding upstream 6371 21000271 ~ 21001642 (+)
galnt1 galnt1 coding upstream 47356 20903853 ~ 20960657 (+)
LOC120561989 atp4a coding upstream 366162 20631458 ~ 20641851 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding upstream 532459 20448227 ~ 20475554 (+)
LOC120562868 LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916 coding upstream 627930 20368104 ~ 20380083 (+)
nr4a3 nr4a3 coding downstream 69472 21080886 ~ 21103601 (+)
stx17 stx17,LOC102795111 coding downstream 95424 21106838 ~ 21117093 (+)
invs LOC102794544 coding downstream 117936 21129350 ~ 21151513 (+)
si:ch211-197h24.6 NA coding downstream 150256 21161670 ~ 21167686 (+)
tmem67 tmem67 coding downstream 161109 21172523 ~ 21183348 (+)
G74207 NA non-coding upstream 114071 20893139 ~ 20893942 (+)
G74208 NA non-coding upstream 115358 20891684 ~ 20892655 (+)
G74205 NA non-coding upstream 166244 20840560 ~ 20841769 (+)
G74204 scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766 non-coding upstream 171265 20832323 ~ 20836748 (+)
G74145 nacad,LOC104951159 non-coding upstream 393306 20607340 ~ 20614707 (+)
G74230 rad54b non-coding downstream 64897 21076311 ~ 21222895 (+)
G74234 NA non-coding downstream 89756 21101170 ~ 21156912 (+)
G74233 NA non-coding downstream 138975 21150389 ~ 21152512 (+)
G74274 kiaa1429,LOC104941925 non-coding downstream 231815 21243229 ~ 21243567 (+)
G74286 NA non-coding downstream 277757 21289171 ~ 21289375 (+)
glipr2l glipr2 other upstream 402848 20600323 ~ 20605165 (+)
gra NA other upstream 682052 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 781022 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 798686 20192690 ~ 20209327 (+)
G73779 hdac9 other upstream 1358502 19646975 ~ 19649511 (+)
LOC120563169 NA other downstream 319998 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 391621 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 587620 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 758134 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 1072255 22083669 ~ 22091963 (+)

Expression


Co-expression Network