G74230 (rad54b)


Basic Information

Item Value
gene id G74230
gene name rad54b
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21076311 ~ 21222895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU99280
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgagagagtcatCTAGAGTGTAAtctagtgtgtgtctgtttacaGAGCTGTGTGAGACATGGTGGTCTGAAAGGCAAAGGTGATGTGGTTGCGTGAGTGATCGAGGTAAGGATctgagaaggtgtgtgtgtcaccAGAGAAATGTCTCCACTGCATCAGCTCGGACATGCTGAGATGCTTCTGCTGCGCCCCTCCACGGTCACCTTGACGACCTAGCTGGCACGGCCTTTCAGAAACCTGCTCGTCTTCCTCTACGACAG

Function

symbol description
rad54b Predicted to enable DNA translocase activity. Predicted to be involved in double-strand break repair via homologous recombination and reciprocal meiotic recombination. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in colorectal cancer and non-Hodgkin lymphoma. Orthologous to human RAD54B (RAD54 homolog B).

NR:

description
PREDICTED: DNA repair and recombination protein RAD54B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99280 True 331 lncRNA 0.52 3 21076311 21222895

Neighbor

gene id symbol gene type direction distance location
LOC120562142 NA coding upstream 74669 21000271 ~ 21001642 (+)
galnt1 galnt1 coding upstream 115654 20903853 ~ 20960657 (+)
LOC120561989 atp4a coding upstream 434460 20631458 ~ 20641851 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding upstream 600757 20448227 ~ 20475554 (+)
LOC120562868 LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916 coding upstream 696228 20368104 ~ 20380083 (+)
rnf41l LOC102792600,LOC102077802,LOC102303797,LOC101478352,LOC102199951,LOC103373185 coding downstream 12292 21235187 ~ 21240428 (+)
esrp1 esrp1 coding downstream 33830 21256725 ~ 21268854 (+)
sgk2b NA coding downstream 85983 21308878 ~ 21312066 (+)
l3mbtl1b l3mbtl3 coding downstream 92174 21315069 ~ 21329447 (+)
fam171a1 fam171a1 coding downstream 138699 21361594 ~ 21387306 (+)
G74207 NA non-coding upstream 182369 20893139 ~ 20893942 (+)
G74208 NA non-coding upstream 183656 20891684 ~ 20892655 (+)
G74205 NA non-coding upstream 234542 20840560 ~ 20841769 (+)
G74204 scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766 non-coding upstream 239563 20832323 ~ 20836748 (+)
G74145 nacad,LOC104951159 non-coding upstream 461604 20607340 ~ 20614707 (+)
G74274 kiaa1429,LOC104941925 non-coding downstream 20334 21243229 ~ 21243567 (+)
G74286 NA non-coding downstream 66276 21289171 ~ 21289375 (+)
G74287 NA non-coding downstream 66658 21289553 ~ 21290314 (+)
G74288 NA non-coding downstream 68147 21291042 ~ 21292380 (+)
LOC120562851 NA non-coding downstream 502053 21724948 ~ 21725705 (+)
sec61b sec61b,LOC102796100 other upstream 64897 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 471146 20600323 ~ 20605165 (+)
gra NA other upstream 750350 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 849320 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 866984 20192690 ~ 20209327 (+)
LOC120563169 NA other downstream 108517 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 180140 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 376139 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 546653 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 860774 22083669 ~ 22091963 (+)

Expression


Co-expression Network