slc50a1 (slc50a1)


Basic Information

Item Value
gene id slc50a1
gene name slc50a1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22083669 ~ 22091963 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU99814
TGATTGCAAACACGGAAATAATGCAGTGCGATACATCCGCGTAGTTATTTTCCAAGTCTAGTTGCATGCGATTTAAGCATCTGTGTTTAAAAGCAGACATTGCACGTGAAACACATAACCGGCTAGTGTGTTAGACTTGTCTTCTCTTGTTCGATGGATTTATTGCAATTTCTGTCATGGGCCTGCATCGTGTTCACGGTCGGGATGTTCTCGACTGGACTGACCGACCTGAAGAAGATGAGAGAATCAAAAAATGCTGACAATATCCAGTTTCTCCCTTTCCTCACCACATGTcttaagtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcaatcCTTCACTATTATCAGTTATTTAGTAGCATTGTTTTTCCTGTtgtccaggggcctgtttcacaaaaccaagataagggattaagccgggatttcccagttatcctggatgaattaagcc
>TU99858
tgtagactcgttccattaaatacattttaattaaagcagctttaaagtttttatttgttaactGATTGTTGCTATCCTCTTCTTTATCTCTTCCCTTTTCAGGTCAAGATAGTGCGAAGTGGTGATGTGCAGTGCTTGTCCTTCCCTCTGACTGTAGCCACCTTCTTCACTTCCACATCCTGGGTGCTGTACGGCCTCCAGCTAAACGACTCCTATATTGTGGTTCCAAACATGCCTGGGATCTTCACCAGCCTCATCAGATTTTATCTGTTTTGGAGATTTGCGGCTGTCAATCAAAGCTCACCTTCCTTTAAGTCTATGCAGATATGATGATGTGAGGGGTGTCGgttatgaaaatgaaaagagaTGAAAGATCTGTTGATTCAATTGAGGGCTGCAGCTATCCATTGCTTGTCTTGTATTTTTAATATACAGAGAGACAGTGGAGAGAAACAAATGTTTGTTGTCATTTCAGGGAGGTATATCAGTTACTCAAAAAAaagtgtcattgattcaacagtttatttttctGCAGTTATTTGTTAAACCTGTGTCTCCTCTCCATGTCCTTCAAGTGCCTTCTGTTAGATCCTGTTTGCCATTAACGATGAATGGCATTTACTGATCTACCAACATGTAAGGAGACTTGCAGTCTGTTCACAATCCAGTGAATTGTATTTAATCTTCCTCACCTTATACTAGCCAAAGATTTTTTTGAGTTGTAACTTGCTGGCTGCTGGTTTCATATTTTTCCCTGATGTGGCAATGATGATTTCATATCCCTTTTAGAGTTGGTACTCATTCTTCTGTTTCACAGTGCAGACAGAATATTAAGTCATCTCAGTGGCAGTAATATATACACTTATATTTGTTCAGAATTGTTTTCTATATATCTTTTTGATACAGAATGTGTATGTTGGCTTATGTCCAACTCAGACATTGTCTACTTGTATTGCTATTTTTATAAGCAATTGTATAAGAgatcaaataaaataagaaaataaattaacacCATAGGGTTTGTTTACAAGAATGAATGTTTATTTTTCTGGTGGCTGGTTGTCATGGGTAATAGAGCCTCACTTGTTCCTCATTATTATCTGTAATAAGGACATATGTTATGCAAATGAAACAGCTGACATGTCAGTGCTGACTCACTCACTTGTAATGGAT
>XM_039805304.1
ACACTGAGACCACTGATTGCAAACACGGAAATAATGCAGTGCGATACATCCGCGTAGTTATTTTCCAAGTCTAGTTGCATGCGATTTAAGCATCTGTGTTTAAAAGCAGACATTGCACGTGAAACACATAACCGGCTAGTGTGTTAGACTTGTCTTCTCTTGTTCGATGGATTTATTGCAATTTCTGTCATGGGCCTGCATCGTGTTCACGGTCGGGATGTTCTCGACTGGACTGACCGACCTGAAGAAGATGAGAGAATCAAAAAATGCTGACAATATCCAGTTTCTCCCTTTCCTCACCACATGTcttaatttttatttgttaactGATTGTTGCTATCCTCTTCTTTATCTCTTCCCTTTTCAGGTCAAGATAGTGCGAAGTGGTGATGTGCAGTGCTTGTCCTTCCCTCTGACTGTAGCCACCTTCTTCACTTCCACATCCTGGGTGCTGTACGGCCTCCAGCTAAACGACTCCTATATTGTGGTTCCAAACATGCCTGGGATCTTCACCAGCCTCATCAGATTTTATCTGTTTTGGAGATTTGCGGCTGTCAATCAAAGCTCACCTTCCTTTAAGTCTATGCAGATATGATGATGTGAGGGGTGTCGgttatgaaaatgaaaagagaTGAAAGATCTGTTGATTCAATTGAGGGCTGCAGCTATCCATTGCTTGTCTTGTATTTTTAATATACAGAGAGACAGTGGAGAGAAACAAATGTTTGTTGTCATTTCAGGGAGGTATATCAGTTACTCAAAAAAaagtgtcattgattcaacagtttatttttctGCAGTTATTTGTTAAACCTGTGTCTCCTCTCCATGTCCTTCAAGTGCCTTCTGTTAGATCCTGTTTGCCATTAACGATGAATGGCATTTACTGATCTACCAACATGTAAGGAGACTTGCAGTCTGTTCACAATCCAGTGAATTGTATTTAATCTTCCTCACCTTATACTAGCCAAAGATTTTTTTGAGTTGTAACTTGCTGGCTGCTGGTTTCATATTTTTCCCTGATGTGGCAATGATGATTTCATATCCCTTTTAGAGTTGGTACTCATTCTTCTGTTTCACAGTGCAGACAGAATATTAAGTCATCTCAGTGGCAGTAATATATACACTTATATTTGTTCAGAATTGTTTTCTATATATCTTTTTGATACAGAATGTGTATGTTGGCTTATGTCCAACTCAGACATTGTCTACTTGTATTGCTATTTTTATAAGCAATTGTATAAGAgatcaaataaaataagaaaataaattaacacCATAGGGTTTGTTTACAAGAATGAATGTTTATTTTTCTGGTGGCTGGTTGTCATGGGTAATAGAGCCTCACTTGTTCCTCATTATTATCTGTAATAAGGACATATGTTATGCAAATGAAACAGCTGACATGTCAGTGCTGACTCACTCACTTGTAATGGATGTAAGATCTTTAAAGGTTtcctgtaaatacatttttaccatAACTAT

Function

symbol description
slc50a1 Predicted to enable sugar transmembrane transporter activity. Predicted to be involved in carbohydrate transport. Predicted to be located in Golgi membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC50A1 (solute carrier family 50 member 1).

NR:

description
PREDICTED: sugar transporter SWEET1

GO:

id name namespace
GO:0008643 carbohydrate transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter)

RNA

RNA id representative length rna type GC content exon number start site end site
TU99814 False 457 lncRNA 0.43 2 22083682 22084524
TU99858 False 1173 lncRNA 0.37 2 22090620 22091916
XM_039805304.1 True 1485 mRNA 0.38 4 22083669 22091963

Neighbor

gene id symbol gene type direction distance location
efna1b efna1,LOC104918192 coding upstream 3367 22069006 ~ 22080302 (+)
efna3b efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981 coding upstream 50402 21975192 ~ 22033267 (+)
flad1 flad1,LOC102778463 coding upstream 183017 21890529 ~ 21900652 (+)
chrnb2 chrnb2,LOC102780733,LOC104959165 coding upstream 248318 21818053 ~ 21835351 (+)
she LOC101483326,LOC102307252,LOC102202678 coding upstream 265447 21805074 ~ 21818222 (+)
LOC120562069 tmem107 coding downstream 15980 22107943 ~ 22110135 (+)
krtcap2 krtcap2 coding downstream 18553 22110516 ~ 22113062 (+)
s100a10b LOC104962190 coding downstream 22156 22114119 ~ 22115560 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding downstream 29741 22121704 ~ 22124437 (+)
adar adar coding downstream 75502 22167465 ~ 22183428 (+)
G74673 NA non-coding upstream 47010 22036278 ~ 22036659 (+)
LOC120562851 NA non-coding upstream 357964 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 791289 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 793355 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 794294 21289171 ~ 21289375 (+)
G74729 NA non-coding downstream 23653 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 27775 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 37689 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 91820 22183783 ~ 22184037 (+)
G74764 NA non-coding downstream 150854 22242817 ~ 22243033 (+)
G74633 tuft1,LOC102781808 other upstream 313383 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 480211 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 667775 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 747004 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 1072255 21008013 ~ 21011414 (+)
LOC120561539 NA other downstream 40615 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 45584 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 47817 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 105749 22197712 ~ 22248527 (+)
rusc1 LOC104958857 other downstream 172976 22264939 ~ 22312520 (+)

Expression


Co-expression Network