LOC120561539


Basic Information

Item Value
gene id LOC120561539
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22132578 ~ 22136234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU99947
CTCTTGTCAGAGGGAAAGCAAAAAAGAGTACACCGCATCATTGTCATTTTGAAAGTTTCTTTTCTGtagtaaagaaagaaagaaagaaagaaagaaagaaaagatttGAAGAGGGGTGAGGCTTGGAAAGAGGGTGTGTCAACCtctatttaaatacatttgtgtCCTCTCTTCCATACCTACACAAGTTCTCATACAAATTTGCCACCATGTCACAGCTTATGCAGGCAATGGATGTCCTCAGGGCTATCTTCGACAAGTATGCTGGAAAAGAAGGAGACAAAGACACCTTGACCAAGAAAGAACTTGCTGAACTGCTCCGCACAGAGCTTGGTGAGCCAAAATCCCAAAGCAAAGCTGAAGTGGACAAATTCTTCGGCATGCTGGATAATGACGGTGATGGTGTTATTTCTTTCGAGGAGTATGTCACTTTTGTGGCAGCCATCACTGTGATGCTTTCCTCTtagaaataagtatttgaacattGCCTTAGAACTTTGGTGTCATACTTAATGTgcactaaataaaaactaatgtgTAATCCAATTTATTACAGTCACATCTGTAAAATATGCATGCCATTATCACATGTTCTGAAAAGGAAAACTTGGTTAAATACACACAGATCATAGATGGGTTGTTGGCTGAAGGGACTTGAAAGTTGCTGACTTTGAGTGTGTttcacagatttttttaatgtcataagtaacaataaagaaaccaaaaatacacattgtgtgtgtgttcctaaaTAAAACATAGATATTGTGCAAACTCAGGCTAATGACCCTCTCTCCGCATCTACAGCAGAAATGTCttaaaaattatctttaagaACATAATCTGGCTTTTTATATAACGTGAACTAAAA
>XM_039804665.1
GTCAACCtctatttaaatacatttgtgtCCTCTCTTCCATACCTACACAAGTTCTCATACAAATTTGCCACCATGTCACAGCTTATGCAGGCAATGGATGTCCTCAGGGCTATCTTCGACAAGTATGCTGGAAAAGAAGGAGACAAAGACACCTTGACCAAGAAAGAACTTGCTGAACTGCTCCGCACAGAGCTTGGTGAGCCAAAATCCCAAAGCAAAGCTGAAGTGGACAAATTCTTCGGCATGCTGGATAATGACGGTGATGGTGTTATTTCTTTCGAGGAGTATGTCACTTTTGTGGCAGCCATCACTGTGATGCTTTCCTCTtagaaataagtatttgaacattGCCTTAGAACTTTGGTGTCATACTTAATGTgcactaaataaaaactaatgtgTAATCCAATTTATTACAGTCACATCTGTAAAATATGCATGCCATTATCACATGTTCTGAAAAGGAAAACTTGGTTAAATACACACAGATCATAGATGGGTTGTTGGCTGAAGGGACTTGAAAGTTGCTGACTTTGAGTGTGTttcacagatttttttaatgtcataagtaacaataaagaaaccaaaaataca

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG:

id description
ko05170 Human immunodeficiency virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU99947 True 871 TUCP 0.37 3 22132578 22136234
XM_039804665.1 False 594 mRNA 0.38 3 22132715 22136094

Neighbor

gene id symbol gene type direction distance location
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding upstream 8141 22121704 ~ 22124437 (+)
s100a10b LOC104962190 coding upstream 17018 22114119 ~ 22115560 (+)
krtcap2 krtcap2 coding upstream 19516 22110516 ~ 22113062 (+)
LOC120562069 tmem107 coding upstream 22443 22107943 ~ 22110135 (+)
efna1b efna1,LOC104918192 coding upstream 52276 22069006 ~ 22080302 (+)
adar adar coding downstream 31231 22167465 ~ 22183428 (+)
rab13 rab13 coding downstream 136858 22273092 ~ 22278899 (+)
fdps fdps coding downstream 153002 22289236 ~ 22295905 (+)
dap3 dap3 coding downstream 196182 22332416 ~ 22338933 (+)
gba gba coding downstream 203395 22339629 ~ 22345550 (+)
G74737 NA non-coding upstream 2664 22129652 ~ 22129914 (+)
G74732 NA non-coding upstream 11232 22119738 ~ 22121346 (+)
G74729 NA non-coding upstream 16552 22115616 ~ 22116026 (+)
G74673 NA non-coding upstream 95919 22036278 ~ 22036659 (+)
LOC120562851 NA non-coding upstream 406873 21724948 ~ 21725705 (+)
G74760 NA non-coding downstream 47549 22183783 ~ 22184037 (+)
G74764 NA non-coding downstream 106583 22242817 ~ 22243033 (+)
G74765 NA non-coding downstream 109255 22245489 ~ 22245763 (+)
G74769 NA non-coding downstream 119037 22255271 ~ 22255478 (+)
G75042 NA non-coding downstream 782518 22918752 ~ 22920103 (+)
slc50a1 slc50a1 other upstream 40615 22083669 ~ 22091963 (+)
G74633 tuft1,LOC102781808 other upstream 362292 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 529120 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 716684 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 795913 21331412 ~ 21336665 (+)
LOC120561537 NA other downstream 1313 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 3546 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 61478 22197712 ~ 22248527 (+)
rusc1 LOC104958857 other downstream 128705 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other downstream 143322 22279556 ~ 22288294 (+)

Expression


Co-expression Network