kcnn3 (kcnn3,LOC104958859,LOC106930148,LOC106962094)


Basic Information

Item Value
gene id kcnn3
gene name kcnn3,LOC104958859,LOC106930148,LOC106962094
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22197712 ~ 22248527 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU99979
AGTCGGTGGAGCCATATATTAAATCACAGACTTCACTGCTCATCTGAGGACTGTTAGCCTACTTGACGTCTAgctttgcaaaaaaaataaaaaatctttccAGGTTTGTGTCGCTGCACGTTTTTGACGTGCAGCTACAGGTTGACCGATTTAATCCAGTCACTATGGATTATTTCTCTTCATCTCGAGTCGATTGTCACTAACGGGGTCGAAATGGGCACCGTCGAGAGATCACTGGTGATTGAGAAAGAAACAAACTGATCATATCAAGTGGAGCCGAGACGGAGGCAACATCTGTGGGGAGCGACGCACAATTTCGAGAGATACGCAAGGGACCTGTGGAGGGACTTATATGAAAGGAGACGAAGCGAAAAGATGATGGGATGGCCGGGacaacatgaaaaagaaaaagtgtggTGGTCTATTTTCATCCAGGCAGTGATTCAACACAACTAACCTGGGGGACAGGGACTGAGAGAGAAGAGGTAGGAGaCAGGTGCGTGGCCACAGCCGTGACCATGGAGCCTCCCCCCTCTCTGAGCTTGGCGCTGCTAGGAGGAAgcgaggatgaggaccagcgcTTCCTCCTTCCCCTGGGCAGTATATCCCATCCCTCCACCACTGGCAACCAGCCAGGATCAAACCACTCCAACCACATGGGAGGATCAAGCCTTGACCGTTTAAATGGCAGCACCCCGTCCCCGTCCCCTGCCACGCCCAACTTGCCTCCAGCATCGCTCCCCAAGTTGCCCCTGTCATCCTCTGGAGCCCAGCCTCTGCCCCCACCCATCCCCAACGCCCTGTATCCCACCAGCACCCCGCTCTCCTCCTGCCTGGGCTCACAGCACAGCCTTAGCGGGGACAACTCCCCAGTTTACAACGCCCTCTTTTACTCCTCCCATTCGCCCTCCATGGAgcgggagagggacagagaccgTGACAGGGAGAGGGGCTGCAAACACAGACAGGCCAGCCCTCTGGTTCACCGTAGGGACAGTAACCCCTTCACGGAGATTGCCATGAGCTCCTGTAAGTATACAGGTGGGGTCATGAAGCCCCTAAGCCGCCTCAGCGCCTCCCGAAGAAACCTCATTGAATCAGATAGCAACAGCGAAACCAAAGAGGGTGGGGTTTCAGCTGTTGCTGGGGCAACAGCAGCTGGAGGGCATGATCGCCAGCGAGAAGCCCCTCCTACCTCCTTGGTGGCCCAGTCCTCTTCTAATCAACCCCCAATTCAGAGCCCTCCAGAGATTGTGATTTCATCCAAAGAAGACTCGCCGTACCTCAGAGCAGGGTATGACATCACTGACTCCACTTCCAACCAGATGTCCATCTACCACCAGAACCACGCGCTGGTGGAGAGCAGGCGGGTGCAGCCGG
>XM_039805206.1
GGAGgcggagaaagagggagagaagttgaaggagagagtgagagacagatCCGGGGAGACAGTGAGCTGTAGATTGAGTGGAAGTCGGTGGAGCCATATATTAAATCACAGACTTCACTGCTCATCTGAGGACTGTTAGCCTACTTGACGTCTAgctttgcaaaaaaaataaaaaatctttccAGGTTTGTGTCGCTGCACGTTTTTGACGTGCAGCTACAGGTTGACCGATTTAATCCAGTCACTATGGATTATTTCTCTTCATCTCGAGTCGATTGTCACTAACGGGGTCGAAATGGGCACCGTCGAGAGATCACTGGTGATTGAGAAAGAAACAAACTGATCATATCAAGTGGAGCCGAGACGGAGGCAACATCTGTGGGGAGCGACGCACAATTTCGAGAGATACGCAAGGGACCTGTGGAGGGACTTATATGAAAGGAGACGAAGCGAAAAGATGATGGGATGGCCGGGacaacatgaaaaagaaaaagtgtggTGGTCTATTTTCATCCAGGCAGTGATTCAACACAACTAACCTGGGGGACAGGGACTGAGAGAGAAGAGGTAGGAGaCAGGTGCGTGGCCACAGCCGTGACCATGGAGCCTCCCCCCTCTCTGAGCTTGGCGCTGCTAGGAGGAAgcgaggatgaggaccagcgcTTCCTCCTTCCCCTGGGCAGTATATCCCATCCCTCCACCACTGGCAACCAGCCAGGATCAAACCACTCCAACCACATGGGAGGATCAAGCCTTGACCGTTTAAATGGCAGCACCCCGTCCCCGTCCCCTGCCACGCCCAACTTGCCTCCAGCATCGCTCCCCAAGTTGCCCCTGTCATCCTCTGGAGCCCAGCCTCTGCCCCCACCCATCCCCAACGCCCTGTATCCCACCAGCACCCCGCTCTCCTCCTGCCTGGGCTCACAGCACAGCCTTAGCGGGGACAACTCCCCAGTTTACAACGCCCTCTTTTACTCCTCCCATTCGCCCTCCATGGAgcgggagagggacagagaccgTGACAGGGAGAGGGGCTGCAAACACAGACAGGCCAGCCCTCTGGTTCACCGTAGGGACAGTAACCCCTTCACGGAGATTGCCATGAGCTCCTGTAAGTATACAGGTGGGGTCATGAAGCCCCTAAGCCGCCTCAGCGCCTCCGAAGAAACCTCATTGAATCAGATAGCAACAGCGAAACCAAAGAGGGTGGGGTTTCAGCTGTTGCTGGGGCAACAGCAGCTGGAGGGCATGATCGCCAGCGAGACCCCTCCTACCTCCTTGGTGGCCCAGTCCTCTTCTAATCAACCCCCAATTCAGAGCCCTCCAGAGATTGTGATTTCATCCAAAGAAGACTCGCCGTACCTCAGAGCAGGGTATGACATCACTGACTCCACTTCCAACCAGATGTCCATCTACCACCAGAACCACGCGCTGGTGGAGAGCAGGCGGGTGCAGCCGGGGAGGGGCAGCAGGCAGGGAGTGGTTGGGGCGGTGGGCACTGGGGCCAGGGGCAGCACCTCCAAAGCCTCCAAACGGAAGAACCAAAACATTGGCTATAAACTGGGGCATCGCAGGGCGCTGTttgagaagaggaagaggctgAGTGACTATGCCCTCATCTTCGGGATGTTTGGCATCGTCGTCATGGTGATTGAGACAGAGCTGTCGTGGGGCGTGTACACCAAGAGCTCCATGTATTCTCTGGCCCTGAAGTGTCTGATCAGCCTGTCCACAGTCATACTGTTGGGCCTCATCATAGCCTACCATGCACGGGAAGTTCAGCTGTTTGTCATCGACAACGGCGCTGACGACTGGCGCTATGACCAGACACGTATACAGGCCGAGGCTGACCTGGACATGGTGCTGAGCGTGCCCATGTTCCTGCGCCTCTACCTCATCGCCAGAGTCATGCTTCTGCACAGCAAACTCTTCACCGACGCCTCCTCCAGGAGTATAGGTGCCCTAAATAAGGTGCATTTCAACACACGGTTTGTAATGAAAACCCTCATGACTATCTGCCCCGGGACGGTGCTGCTGGTCTTCAGCATCTCTCTGTGGATCATCGCTGCCTGGACCGTACGAGTTTGCGAGAGGTATCATGATGCCCAGGACGTGACCAGTAACTTCCTGGGAGCCATGTGGCTTATCTCCATCACTTTCTTGTCCATCGGCTATGGAGACATGGTTCCTCACACCTACTGTGGCAAAGGGGTCTGTCTGCTCACAGGAATCATGggtGCGGGCTGTACGGCTCTGGTGGTTGCCGTGGTAGCCAGGAAGCTGGAGCTGACCAAGGCCGAGAAACACGTACACAACTTCATGATGGACACGCAACTCACAAAGAGGATAAAGAATGCAGCGGCTAACGTGCTGAGGGAAACCTGGCTCATCTACAAACACACCAAGCTGATGAAGAAGATCGACCACTCCAGAGTCCGAAAACACCAACGGAAGTTCCTCCAGGCTATACATCAATTACGCAGTGTGAAAATGGAGCAGAGGAAACTCAGTGATCAGGCCAACACACTAGTGGACCTCTCGAAGATGCAGAGCGTCATGTATGAGCTCATGTCGGAGCTTAACGACCGCAGCGAGGACTTGGAACGCCAGATGCTGTCCCTGGAGCAGCGGGTGGAGCAGCTCACCGCCGGCTTCAACACCCTGCCTGCCCACCTCTCGGCCACCCTCAGCGCCCAGCACGCCGCCCTGGTCCACTTGCTCCGAGAGAGGGATGGGAGGGATGGGTGGGATGGGagaggaggtggtggaggaggtgCTGTGGTCCCACTGTCCCCTGCTGCGTCTTTAACCGCTGCTGCAGCTTCAGTTTCTCCAGTCCAGGTCTTATCTCCAGCATCGCCCCCATCCCAGGTCCCTACTTTGGCCTTAGAGTGCCCTCTGTCGCCCCCACCtctgagcccagaggggagcctGGAGGCTAGTCCCATCCCAAACACCTGCACTTCTAGCTGCTGAAGACAGCTCTGAGGACCAGGACAGAACAAATATGGAAAGAAatcagggagagaggaggagggggttgTGCTAGTCCTCTCACTTCAGACTAAAGGAGAGGAacaaggagggaggaggagagaaatgtGAGGTGATCTTCGGAAACTAACGCTCCATGAGGGAGGGATGAAGACGGAACTATGAGGATAAATAATAGGATTAAGATGGAGGGCCAGTATGAACGATGAAACATGTTAGGGACTTTGGGGCGTTTTCCTTGACGAGGGAAGGAGAAGAAAAATTGAGATCAAATGGAGACACTGAAAGGTGTGAGGGGGAGGAAGAATGTCAAGAAAGTGAGAAATGGAGGcagagaggatgaggagggggaaggagaggggaggagaaatAACAAGGAATAATTACATGAACTCAGAGCTCCTAAATGGAATCCACTCCGATTACTGAAAAGGGCcttttattctctctctttctctctccaaatTTCTCTCCAAATTTCTCTCCCTTCATCAGGAATTAAtgaccatgactttttatcctCATGATGTATTTTCTATCTGAATGCTACCTGTGTGTTAACGAGCATCCCTTTAACAGAGAGTCGATCAATACGACcatgatatatatttaaaaaaaaaaaaactagtggcatgaactgcacacacaca

Function

symbol description
kcnn3 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in paranoid schizophrenia and schizophrenia. Orthologous to human KCNN3 (potassium calcium-activated channel subfamily N member 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: small conductance calcium-activated potassium channel protein 3

GO: NA

KEGG:

id description
K04944 KCNN3, KCA2.3; potassium intermediate/small conductance calcium-activated channel subfamily N member 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU99979 False 1380 TUCP 0.55 2 22197794 22199818
XM_039805206.1 True 3644 mRNA 0.53 13 22197712 22248527

Neighbor

gene id symbol gene type direction distance location
adar adar coding upstream 14284 22167465 ~ 22183428 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding upstream 73275 22121704 ~ 22124437 (+)
s100a10b LOC104962190 coding upstream 82152 22114119 ~ 22115560 (+)
krtcap2 krtcap2 coding upstream 84650 22110516 ~ 22113062 (+)
LOC120562069 tmem107 coding upstream 87577 22107943 ~ 22110135 (+)
rab13 rab13 coding downstream 24565 22273092 ~ 22278899 (+)
fdps fdps coding downstream 40709 22289236 ~ 22295905 (+)
dap3 dap3 coding downstream 83889 22332416 ~ 22338933 (+)
gba gba coding downstream 91102 22339629 ~ 22345550 (+)
polr3c polr3c coding downstream 109264 22357791 ~ 22366153 (+)
G74760 NA non-coding upstream 13675 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 67798 22129652 ~ 22129914 (+)
G74732 NA non-coding upstream 76366 22119738 ~ 22121346 (+)
G74729 NA non-coding upstream 81686 22115616 ~ 22116026 (+)
G74673 NA non-coding upstream 161053 22036278 ~ 22036659 (+)
G74769 NA non-coding downstream 6744 22255271 ~ 22255478 (+)
G75042 NA non-coding downstream 670225 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 676065 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 734365 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 745893 22994420 ~ 22994706 (+)
snx27b snx27,LOC102196713,LOC102288812 other upstream 43028 22139780 ~ 22154684 (+)
LOC120561537 NA other upstream 58489 22137547 ~ 22139223 (+)
LOC120561539 NA other upstream 61478 22132578 ~ 22136234 (+)
slc50a1 slc50a1 other upstream 105749 22083669 ~ 22091963 (+)
G74633 tuft1,LOC102781808 other upstream 427426 21769548 ~ 21770286 (+)
rusc1 LOC104958857 other downstream 16412 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other downstream 31029 22279556 ~ 22288294 (+)
rprd2b NA other downstream 221451 22469978 ~ 22489944 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other downstream 311417 22559944 ~ 22585572 (+)
arnt NA other downstream 361491 22610018 ~ 22625953 (+)

Expression


Co-expression Network