utp11 (utp11)


Basic Information

Item Value
gene id utp11
gene name utp11
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27013093 ~ 27015102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804667.1
CCCGGAACCCACATGTTTAGCTAACTGGAAAGCACTAGACCCTAGACCCGAAGCAGCAGTGAGGTTTCTCTAAAAAGACCTACATATACCTGCTTTGACTAAACTAGTTTGTATTATTACGCTCGAGGACATTTTTCAGAATGTCTTCGTTCAGGAAAGCGTTGAAATCTCGACAGAGAAACCACCATGAAAGATCTCAGCCTGGTTTCAGGAAACATTTGGGATTGCTGGAGAAGAAGAAAGACTACAAACTTCGTGCAGATGATTACCACAAGAAACAAAACACTCTTGCTGCTCTGCGAAAGAAAGCTCTGGATAAAAACCCAGATGAGTTTTACTACAACATGATCAACTCTCAGCTGCAGGATGGAGTTCACGTGGCGAAAAAAGCCAATGAGGAGTTGGAGGtgacagaggagcagaagaaaaTCATGAGGACGCAGGATATCAAATATGTAGAGATGAAAAGGGTTGCAGAGGCTAAGAAAATTGAGAGGCTGAAAGGAGAGCTCCATCTTCTGGAGGCAGacagcaaacaaaaaaacaagcataCATTCTTTGTGGATTCCAAAACAGAAGTGCAGTCATTTGAGCTGGCAAACCACCTCAACACAGCTCCTGAGCTGGTGGGCAGAGTGTTCAACAGGCCAACTCTGAAAACCCTGGAGACTAAGAGCATCCAGGGAGCTGTAGAGCCTCGCACGATGAAGAAGTTGGCCAAGCAGAGGAATCACCAGTATAAGATCCTTTCTCAGAGGATTGAccgagaaaagaaaatgtttgtaATAACCCAGAAAATTCAGACCCGCAAGGACCTACAGGATAGGAACAAAAAAGTGAAGGTACAAAAGGAGACACCCAATGCTGCAGCTATCTACAAATTTGAGACCAAGAGGAAGCGCTGAGAGGGGAGTAACCATCTTGCTGAGAAGAACCAACTTTGCCAATGTGAAATAATGGACTTCTAGATCAAACCATAGACCGCAGACATGAGATCATTTTTCTACCCTCAAATATTGTTTTGTACATATTTATCTACGACTTTTAGtttctttcaaaaataaatatcagaacatacacat

Function

symbol description
utp11 Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP11 (UTP11 small subunit processome component).

NR:

description
PREDICTED: probable U3 small nucleolar RNA-associated protein 11

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14769 UTP11; U3 small nucleolar RNA-associated protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804667.1 True 1082 mRNA 0.43 8 27013093 27015102

Neighbor

gene id symbol gene type direction distance location
rspo1 rspo1 coding upstream 57809 26943236 ~ 26955284 (+)
dnali1 dnali1 coding upstream 123258 26886568 ~ 26889835 (+)
eva1ba eva1b,LOC104941913 coding upstream 288003 26712449 ~ 26725090 (+)
stk40 stk40,LOC103141542 coding upstream 337601 26656953 ~ 26675492 (+)
oscp1b oscp1,LOC106583166,LOC102779645 coding upstream 357994 26648212 ~ 26655099 (+)
LOC120561567 mycbp coding downstream 288208 27303310 ~ 27305006 (+)
pnrc2 pnrc2,LOC100697533,LOC104941893,LOC101487357 coding downstream 336749 27351851 ~ 27355833 (+)
si:dkeyp-97a10.3 NA coding downstream 1032541 28047643 ~ 28059160 (+)
LOC120562747 LOC103369304,LOC107379318,LOC104956022,LOC100707205,LOC107082966 coding downstream 1059088 28074190 ~ 28077263 (+)
etfb etfb coding downstream 1247765 28262867 ~ 28272836 (+)
G76338 NA non-coding upstream 147538 26864720 ~ 26865555 (+)
G76313 NA non-coding upstream 280191 26731306 ~ 26732902 (+)
G76276 NA non-coding upstream 335876 26676995 ~ 26677217 (+)
LOC120562862 NA non-coding upstream 412982 26576712 ~ 26600111 (+)
G76251 NA non-coding upstream 726593 26286300 ~ 26286500 (+)
G76393 NA non-coding downstream 38 27015140 ~ 27016107 (+)
G76412 NA non-coding downstream 41681 27056783 ~ 27057005 (+)
G76418 NA non-coding downstream 257456 27272558 ~ 27272827 (+)
G76419 NA non-coding downstream 275066 27290168 ~ 27291432 (+)
G76437 NA non-coding downstream 311976 27327078 ~ 27330040 (+)
G76355 snip1 other upstream 126547 26883450 ~ 26886546 (+)
G76315 NA other upstream 197702 26808118 ~ 26815391 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other upstream 365478 26645384 ~ 26647615 (+)
G76192 NA other upstream 870466 26139901 ~ 26142627 (+)
taf12 taf12 other upstream 1217574 25792818 ~ 25795519 (+)
G76417 NA other downstream 269436 27284538 ~ 27288457 (+)
fam110d LOC104924711,LOC103367059 other downstream 852342 27867444 ~ 27885464 (+)
G76511 NA other downstream 933781 27948883 ~ 27952580 (+)
ago1 ago1,LOC102230823,LOC103367053,LOC107379324,LOC103388087,LOC107082980,LOC101466039,LOC104959479 other downstream 947588 27962690 ~ 27983714 (+)
LOC120561771 LOC103367052,LOC101466533,LOC107379323,LOC100706402,LOC103139281 other downstream 968951 27984053 ~ 28027526 (+)

Expression


Co-expression Network