s100w (LOC104962188,LOC103388219,LOC106537129,LOC102230839)


Basic Information

Item Value
gene id s100w
gene name LOC104962188,LOC103388219,LOC106537129,LOC102230839
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22121704 ~ 22124437 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804669.1
TAATTAAAGGCGCTTTGCTGTCAGTCTGACAACAGTCTCACCTGGGACAGCTTGTGACACAGACGTGTTCTTTCTTCACCCGGGGAACGTGAACACTTAAGctaCAGCCATGGCTCGTCTGGAACAGGTCATTACAAACATTGTGGATATATTTCTGGAGTATGCTGATGATGATGGCAAGAAACACCAGTTAAACACAGAAGAGTTGAAGAAGGTGTTGGAGAAAGAAATACAAAGTCCTGAGTTAAAAGATAAGATCAATGCAGATGACATCGGGGAAGCCATGGAGCTGCTGGATAAAAACCATGATGGTGAGGTCAACTTCAGAGAGTTTTgtcggtgtgtgtctgtcctggCCAAATGCTACTACAACAAGAAGACAGGCAAGGGTGTCAAGAGAGGCAAGGGCAAAGAACAAGAagctgaagaagaagactgaaaAAGATGAACTGCAAACGCTATAAATGTTTGTAGCACCAAAATATATAATGACATTTATAACATACCCACAGTCATCCTTGAAAACAGATGCTGCTGGTTTTAGGCAATTTGCACATCCATCATGAAACACAAGCCTGTGAGTTGTGTTTGAAATGTGCATCCAAAAGTTATATTCACTGTGTGATCTGGTTTTCTTTACATTCTATACTTcctgaaaatgaataaaacactaGAAGAAGTTTA
>XM_039804670.1
CAAATTCCTTCCATCACTGTGTGACTCATGACTTTTATGTGAAGAAGTGGTTTTACTTTTTCTGCTGTTGTTTTCTTCACTTGGACAGGTGGTGgcttacttttttcttttctggtgGATTATATTGATTATGAAGAGCCACATCAGCATACATCTGTTACATTATATTAAATAATTACGctaCAGCCATGGCTCGTCTGGAACAGGTCATTACAAACATTGTGGATATATTTCTGGAGTATGCTGATGATGATGGCAAGAAACACCAGTTAAACACAGAAGAGTTGAAGAAGGTGTTGGAGAAAGAAATACAAAGTCCTGAGTTAAAAGATAAGATCAATGCAGATGACATCGGGGAAGCCATGGAGCTGCTGGATAAAAACCATGATGGTGAGGTCAACTTCAGAGAGTTTTgtcggtgtgtgtctgtcctggCCAAATGCTACTACAACAAGAAGACAGGCAAGGGTGTCAAGAGAGGCAAGGGCAAAGAACAAGAagctgaagaagaagactgaaaAAGATGAACTGCAAACGCTATAAATGTTTGTAGCACCAAAATATATAATGACATTTATAACATACCCACAGTCATCCTTGAAAACAGATGCTGCTGGTTTTAGGCAATTTGCACATCCATCATGAAACACAAGCCTGTGAGTTGTGTTTGAAATGTGCATCCAAAAGTTATATTCACTGTGTGATCTGGTTTTCTTTACATTCTATACTTcctgaaaatgaataaaacactaGAAGAAGTTTA

Function

NR:

description
PREDICTED: protein S100-A5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804669.1 False 684 mRNA 0.41 3 22123245 22124437
XM_039804670.1 True 763 mRNA 0.38 3 22121704 22124437

Neighbor

gene id symbol gene type direction distance location
s100a10b LOC104962190 coding upstream 6144 22114119 ~ 22115560 (+)
krtcap2 krtcap2 coding upstream 8642 22110516 ~ 22113062 (+)
LOC120562069 tmem107 coding upstream 11569 22107943 ~ 22110135 (+)
efna1b efna1,LOC104918192 coding upstream 41402 22069006 ~ 22080302 (+)
efna3b efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981 coding upstream 88437 21975192 ~ 22033267 (+)
adar adar coding downstream 43028 22167465 ~ 22183428 (+)
rab13 rab13 coding downstream 148655 22273092 ~ 22278899 (+)
fdps fdps coding downstream 164799 22289236 ~ 22295905 (+)
dap3 dap3 coding downstream 207979 22332416 ~ 22338933 (+)
gba gba coding downstream 215192 22339629 ~ 22345550 (+)
G74732 NA non-coding upstream 358 22119738 ~ 22121346 (+)
G74729 NA non-coding upstream 5678 22115616 ~ 22116026 (+)
G74673 NA non-coding upstream 85045 22036278 ~ 22036659 (+)
LOC120562851 NA non-coding upstream 395999 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 829324 21291042 ~ 21292380 (+)
G74737 NA non-coding downstream 5215 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 59346 22183783 ~ 22184037 (+)
G74764 NA non-coding downstream 118380 22242817 ~ 22243033 (+)
G74765 NA non-coding downstream 121052 22245489 ~ 22245763 (+)
G74769 NA non-coding downstream 130834 22255271 ~ 22255478 (+)
slc50a1 slc50a1 other upstream 29741 22083669 ~ 22091963 (+)
G74633 tuft1,LOC102781808 other upstream 351418 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 518246 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 705810 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 785039 21331412 ~ 21336665 (+)
LOC120561539 NA other downstream 8141 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 13110 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 15343 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 73275 22197712 ~ 22248527 (+)
rusc1 LOC104958857 other downstream 140502 22264939 ~ 22312520 (+)

Expression


Co-expression Network