LOC120561543 (matn2,LOC102780797)


Basic Information

Item Value
gene id LOC120561543
gene name matn2,LOC102780797
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 976511 ~ 996230 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804671.1
TGGAGTAAGGGGCAGAGCAATGCAAGTGCCTGGGCAGATACAAAACGCCAGAGGGCTGGGATATATGTAAGCATGTTTACTGTCTGGAGCTGCCATTGACTGACTCTTCCTGCTGGAACTCCTTTTCGTGACGTATTCCTGGGATTTATTGAGAAACCTTGATTCCAGGAGTTGAGGAGAAATAGCTGGTTTTGATAACAGGTTGTCACATCTTGTCAGAATGAGGTCCCTGGCCCTCAGCCTCTTCTTCCTGTTGTGCTGTAACGCAGTTCGACTGGACAGACGGCGTCCCAGACCCATTGCGGCCAGAGGTCGAAATGAGACTACTGTCCAAACCAAACCAGCGGAGAAACCTTGCAAAGCAATCCCGCTGGATTTCGTCTTTGTCATCGACAGCTCCCGAAGCATCCGCCCCAACGACTACGAGAAGGTGAAGACCTTCATCATCAACCTGCTGCAGTTCCTCGGGGTGGGCTCTGATGCCACTCGGGTCGCTCTGCTACAGTATGGCAGCGTGGTCCAGCCCGAGTTCTCCCTCAACACCTACACCACCAGGGCTGAGGTGGAGCAGGCGGTGAGGAACATGGAGCACCTCGCCACAGGAACAATGACGGGTCTGGCCATCCAGTACACCATGGAGACAGCCTTCACTGAGGAAGAGGGAGCACGACCAGCAGAACTGCTTATCCCGCGAATCGCTATGGTTGTGACTGATGGGCGGCCTCAAGACACAGTGGAGGAGATCGCGGCTCAGGCGAGGCATGCCGGCATCCAGATCTTTGCTGTCGGAGTGGGCAGGGTGGACATGAACACTCTGAAGGCCATAGGGAGCGAGCCACACTCTGAGCATGTGCACCTGGTGGCCAACTTTAGCCAGATAGAAACCCTCATCTCTGTGTTCCAGTCCAAACTGTGTGGAGGTTCAGAGATGTGTGAGGTGGTGGACCATCAGTGCCAGCACATCTGTGTGAGCAGCCCTGCCTCATACAGGTGCAAGTGCAGGAAGGGCTTCACTCTCAACCCCGATGGCAAGACATGTAAAGAGATAGACCATTGCGCTGACGGGAAGCATGGCTGTGAACAGGAGTTTATGAACACAGAagatgcctgtgtgtgtaaatgcaggAAAGGCTACACACTCAGACCTGATGGGAAAACATGCAAGAAGATAGACCATTGCGCTGACGGGAAGCACGGCTGTGAACAGGAGTTTATGAACACAGAagatgcctgtgtgtgtaaatgcagaAAAGGCTACACACTCAGACCTGATGGGAAAACATGCAAGAAGATAGACCATTGCGCTGACGGGAAGCATGGCTGTGAACAGGAGTTTATGAACACAGAAGACacctgtgtgtgtaaatgcaggAAAGGCTACACACTCAGACTTGATGGGAAAACATGCAAGAAGATAGACCATTGTGCTGATGGTAAACATGGCTGTGAGCAGGAGTTTCTGAATACAGAAGAttcatgtgtgtgtaaatgcaggAATGGATTCACACTCCGACCCGATGGAAAAACATGCAAGAAGCCAGAGTGTGGCGATGGAGTCATGGATCTGGTTTTCGTAATCGATGGCTCCAAGAGTCTGGGCCCTGCCAACTTTGAACTGGTCAAGCAGTTTGTAAACGGCATTGTGGACTCACTGGACATTTCCAGGACAGGCACCCATGTTGGCCTTCTTCAATACTCCACCAAGGTGCGCACAGAGTTCACCCTAGGCCAGTACACCACGGCGCAGAACATCAAGCAGGCTGTGTCCCGGATGCAGTACATGGGGAGAGGCTCCATGACTGGCTCAGCCTTACGTCACATGTTTGAGCTCAGCTTTTCAGCTAAAGAAGGAGCCAGGCCGAACATCCCACGTGTCAGCATTGTGTTCACTGATGGAAGATCACAGGATGACGTCTCTGAATGGGCTGATAAAGCAAAGAACTCTGGGGTCACATTATATGCCTTGGGTGTTGGCAAAGCCATTGAACAGGAGCTGAGAGAAATAGCTTCAGAGCCTGATGAGAAGCACCTTTATTACGCAGAAGATTTTGACAAAATGGGAGAAATTACAATGAAGCTCAAGTCCAGGATATGTAAAAACAAACCGTCCGATGAAAACATGTGCCAGTGTGAGAACGTGATATTATTTCAAAACCAGGTCACCAAGAAGCTGACGAACCTGATGCAGAATATTGAAGCCATGTCGAAGAAGCTGGAGTCACTCGAGAATCAAGTTGTGCGCAAATGAAAGGCTGAGACTCATCCCCCTCCCCCCGAACCTGCAGTGTAGCATTCATCTTTAATCCTGTTCTACAAGCTACACATGCAATGCTTTCTACTGAAGCTATTTTTACACGTTTTGTATACAacagtgtctttgtgtctgtaatGTTCTTTATGTAATGCCAAATCAAATAAATAGCTTTGTACAGTAA

Function

symbol description
matn2 Predicted to be an extracellular matrix structural constituent. Predicted to act upstream of or within neurogenesis and response to axon injury. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: matrilin-2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804671.1 True 2435 mRNA 0.50 12 976511 996230

Neighbor

gene id symbol gene type direction distance location
LOC120562727 LOC103364896 coding downstream 282 965289 ~ 976229 (-)
pop1 pop1 coding downstream 20250 928441 ~ 956261 (-)
LOC120561601 kcns2,LOC102789903 coding downstream 100473 873040 ~ 876038 (-)
LOC120562122 vps13b coding downstream 251945 344538 ~ 724566 (-)
spag1b spag1,LOC102791438 coding downstream 654629 295507 ~ 321882 (-)
LOC120562853 laptm4b,LOC103136995,LOC103478192 coding upstream 1372 997602 ~ 1014511 (-)
LOC120561566 LOC108250351 coding upstream 38557 1034787 ~ 1046899 (-)
LOC120561835 NA coding upstream 55307 1051537 ~ 1053321 (-)
LOC120562566 mtdh,LOC103364934,LOC102233891 coding upstream 66328 1062558 ~ 1076714 (-)
ubr5 ubr5 coding upstream 92507 1088737 ~ 1144915 (-)
G69698 NA non-coding downstream 12775 963496 ~ 963736 (-)
G69650 NA non-coding downstream 171209 805050 ~ 805302 (-)
G69615 NA non-coding downstream 633473 342587 ~ 343038 (-)
G69564 NA non-coding downstream 729571 246688 ~ 246940 (-)
G69541 NA non-coding downstream 743013 217828 ~ 233498 (-)
LOC120562682 NA non-coding upstream 57100 1053330 ~ 1055361 (-)
G69742 NA non-coding upstream 84149 1080379 ~ 1080878 (-)
G69746 NA non-coding upstream 86408 1082638 ~ 1083151 (-)
G69794 NA non-coding upstream 89272 1085502 ~ 1155503 (-)
G69799 NA non-coding upstream 176932 1173162 ~ 1173415 (-)
osr2 osr2 other downstream 243755 728485 ~ 732756 (-)
zfpm2a zfpm2 other upstream 728928 1725158 ~ 1861166 (-)
usp45 usp45 other upstream 1730938 2727168 ~ 2818027 (-)
G70407 NA other upstream 2632903 3629133 ~ 3629818 (-)
LOC120563202 NA other upstream 2983081 3979311 ~ 3979414 (-)
eny2 eny2,LOC100692744 other upstream 3076094 4072324 ~ 4077811 (-)

Expression


Co-expression Network