LOC120561555 (ncoa7,LOC104938018)


Basic Information

Item Value
gene id LOC120561555
gene name ncoa7,LOC104938018
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13239114 ~ 13243225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804684.1
AGCGTTGGAGAGTAAGTGAAACGAATCATCAAGAGAGCTGTGAACATTGTTATGCGGGGTCCTGAACATGGTGATGTTATCTGGAGTTTAATCACACGGGTTGACCACCTCTACACCTTCTTTGTACAGTGGTCCCCAGAAATCTACACTAAGGGCAACAAGAAGCACTACCAGCCCTGTATCATCATCAGAGAGAAATGTCAGAAGTCGTATCTGGTAGTGAATAAGTACAAGGTGGCTGTGATCAACAAGTGCCTCAGTAAACCTGTCAACCCCACAGCTAAAAACTGGGAGATCATCACAATGAAGGACTCCAAGCGGCGCCAGAGTCTGAGTAGCTCGGTGGACTCTGAGGCAGAGGAGCCCGAGTACCAGGAGGAAGCTGAAGGTGCCCTCCCTGTCCTCTGTGACCGCAGCCACCTGCTGGATGACCAACACCTGGAGAAACTTGCTGCTCACATGCCAGCAAGGACCCAGGGCTATCCTTGGCAACTGGTCTACAGCACATCCATCCATGGGAGCAGTCTGAAGACTATCTACAGGAACACGACAAGCCTGGACAGCCCTGTGCTGCTGGTCATCAAAGACATGCATAATAAGGTGTTTGGGGCGTTTTCTTCTGATCCATTCAAAGTCAGTAAATACTGCTATGGCACAGGGGAAACCTTTCTGTTCAGCTTCAACTCTGACTTCCAGGTATACAGGTGGAGCGGCGAGAACTCCTACTTTGTGAGCGGCAACTTGGAATCTCTGCAGATTGGTGGAGGGGGGGGCGGATTTGGCCTGTGGCTGGACGCTGATCTGTACCATGGTTCAAGCTTCTCCTGTCCCACATTCCGCAATGCGTCGCTCTCCACACAGGAAGACTTCATTATAAAAGACCTCGAAGTCTGGACTGTGGGAACTTAAGAGGACAACATCTGAAAAGACCCCACTGTCCGGACTGGAGTTAGAAAACTTCCAAAATGTCAAGGCGTACATGTGGTTTTAGCCACTACTGTACAAACCCTGAAAGAGCAGGTGCTGTCATCTGGGCACCTGGCTGAGATTAGCCCACATACAGAAGTAAAAGTCTTTTGGTTCTCATGCTGGACTTTCTGTTTATGCTGGTGTGATCTGTGCCTGTTTAAGACAAGTGGCCAGATGAAATCCTGTAATTCAGGGTCCTGCTGCTTTAAACTACCGGCTATTCATCAATAGCCCCGTGCTAAGACCAGTCAGTCACTGGCATCTGACGCTTTAAGCCCCCCCATGCCCTCCCTTTGTGGTGGGGAGCATTATAATACAAAGTTCACAGAAACACTGTTGAATAAAAAAGTTTGTAATGACTGTAAGCGCATTGAGGATTTaaggaaatatttttatttttctgtctaACAGCCACATGTTTGTggaatttaaaatgtgtttacagtatgtgtaaGGTTTACGAAACATACTTGGCACCAAAGGGTCCGTATAAACTAAAAGgttaaacaattaatttattggAAAAACACTGTAGTACGCCCAATGTCCTAAATGTACTCTAATtgcacttgttttttttctaacgtGATGTCTGGCTTTAATGTTGTTCTCCATTTGAAGACTATTGCTGCAGGTGAAGACCTAATCACTCAGGTCAATAAAAGCATTAGGTTGCACTATAAACAACG
>XM_039804685.1
AGGGGGCTGAGACTCTGGACAGGGACAGTGGACACGCTGCTTCAGCACTGAACCTCCAAAccatctactctctctttctccttgtgGTTTACCCTCATCTTCAATCAGCCATGGGAGTTGCCTACAGCGTTGGAGAGGTTGACCACCTCTACACCTTCTTTGTACAGTGGTCCCCAGAAATCTACACTAAGGGCAACAAGAAGCACTACCAGCCCTGTATCATCATCAGAGAGAAATGTCAGAAGTCGTATCTGGTAGTGAATAAGTACAAGGTGGCTGTGATCAACAAGTGCCTCAGTAAACCTGTCAACCCCACAGCTAAAAACTGGGAGATCATCACAATGAAGGACTCCAAGCGGCGCCAGAGTCTGAGTAGCTCGGTGGACTCTGAGGCAGAGGAGCCCGAGTACCAGGAGGAAGCTGAAGGTGCCCTCCCTGTCCTCTGTGACCGCAGCCACCTGCTGGATGACCAACACCTGGAGAAACTTGCTGCTCACATGCCAGCAAGGACCCAGGGCTATCCTTGGCAACTGGTCTACAGCACATCCATCCATGGGAGCAGTCTGAAGACTATCTACAGGAACACGACAAGCCTGGACAGCCCTGTGCTGCTGGTCATCAAAGACATGCATAATAAGGTGTTTGGGGCGTTTTCTTCTGATCCATTCAAAGTCAGTAAATACTGCTATGGCACAGGGGAAACCTTTCTGTTCAGCTTCAACTCTGACTTCCAGGTATACAGGTGGAGCGGCGAGAACTCCTACTTTGTGAGCGGCAACTTGGAATCTCTGCAGATTGGTGGAGGGGGGGGCGGATTTGGCCTGTGGCTGGACGCTGATCTGTACCATGGTTCAAGCTTCTCCTGTCCCACATTCCGCAATGCGTCGCTCTCCACACAGGAAGACTTCATTATAAAAGACCTCGAAGTCTGGACTGTGGGAACTTAAGAGGACAACATCTGAAAAGACCCCACTGTCCGGACTGGAGTTAGAAAACTTCCAAAATGTCAAGGCGTACATGTGGTTTTAGCCACTACTGTACAAACCCTGAAAGAGCAGGTGCTGTCATCTGGGCACCTGGCTGAGATTAGCCCACATACAGAAGTAAAAGTCTTTTGGTTCTCATGCTGGACTTTCTGTTTATGCTGGTGTGATCTGTGCCTGTTTAAGACAAGTGGCCAGATGAAATCCTGTAATTCAGGGTCCTGCTGCTTTAAACTACCGGCTATTCATCAATAGCCCCGTGCTAAGACCAGTCAGTCACTGGCATCTGACGCTTTAAGCCCCCCCATGCCCTCCCTTTGTGGTGGGGAGCATTATAATACAAAGTTCACAGAAACACTGTTGAATAAAAAAGTTTGTAATGACTGTAAGCGCATTGAGGATTTaaggaaatatttttatttttctgtctaACAGCCACATGTTTGTggaatttaaaatgtgtttacagtatgtgtaaGGTTTACGAAACATACTTGGCACCAAAGGGTCCGTATAAACTAAAAGgttaaacaattaatttattggAAAAACACTGTAGTACGCCCAATGTCCTAAATGTACTCTAATtgcacttgttttttttctaacgtGATGTCTGGCTTTAATGTTGTTCTCCATTTGAAGACTATTGCTGCAGGTGAAGACCTAATCACTCAGGTCAATAAAAGCATTAGGTTGCACTATAAACAACG
>XM_039804686.1
acacacacacacacacacacacagttaaagatgaaataaaagccCTCTGTGGCTCTTTAACTGCAGGTTAACGTCAGGGCAGGACAATAAACCTCTACAGTTTAAAcaagcatttgtaaattaatTGGTTTATAAAAATCATCAAGTATCCCCTTACAGTAACTGAGGCACCAAAGTGCCTGGCAGTTATCCCAGAGGTTATGGGAAATCCCAGTCTCTATATATGGACATCCTATCTCAATCTCCCTCCCATTTTCCCAGAGCCGCGCTTCACTTTCCTGTTTGAGAGAATAGAAACTGTTCCGTATCAGAGCTAACCAATGAGAAGCCTCTCCACTCAAGTTTCAAACCAATAGCATTTCAGACAAACAGAGTAAAAGTAGCCCAGATGCATAAGGGATGGATGTGGTACATGTGGTACTGCAGAGCGCAGAGCTTGACAGATAAAATCAGGAAGAATGAAGCTGCAGTCAGACAATTTCaaggtgttttattttgccaGTGACTGTATGGAGCCATATGTTGAGATCATCACAATGAAGGACTCCAAGCGGCGCCAGAGTCTGAGTAGCTCGGTGGACTCTGAGGCAGAGGAGCCCGAGTACCAGGAGGAAGCTGAAGGTGCCCTCCCTGTCCTCTGTGACCGCAGCCACCTGCTGGATGACCAACACCTGGAGAAACTTGCTGCTCACATGCCAGCAAGGACCCAGGGCTATCCTTGGCAACTGGTCTACAGCACATCCATCCATGGGAGCAGTCTGAAGACTATCTACAGGAACACGACAAGCCTGGACAGCCCTGTGCTGCTGGTCATCAAAGACATGCATAATAAGGTGTTTGGGGCGTTTTCTTCTGATCCATTCAAAGTCAGTAAATACTGCTATGGCACAGGGGAAACCTTTCTGTTCAGCTTCAACTCTGACTTCCAGGTATACAGGTGGAGCGGCGAGAACTCCTACTTTGTGAGCGGCAACTTGGAATCTCTGCAGATTGGTGGAGGGGGGGGCGGATTTGGCCTGTGGCTGGACGCTGATCTGTACCATGGTTCAAGCTTCTCCTGTCCCACATTCCGCAATGCGTCGCTCTCCACACAGGAAGACTTCATTATAAAAGACCTCGAAGTCTGGACTGTGGGAACTTAAGAGGACAACATCTGAAAAGACCCCACTGTCCGGACTGGAGTTAGAAAACTTCCAAAATGTCAAGGCGTACATGTGGTTTTAGCCACTACTGTACAAACCCTGAAAGAGCAGGTGCTGTCATCTGGGCACCTGGCTGAGATTAGCCCACATACAGAAGTAAAAGTCTTTTGGTTCTCATGCTGGACTTTCTGTTTATGCTGGTGTGATCTGTGCCTGTTTAAGACAAGTGGCCAGATGAAATCCTGTAATTCAGGGTCCTGCTGCTTTAAACTACCGGCTATTCATCAATAGCCCCGTGCTAAGACCAGTCAGTCACTGGCATCTGACGCTTTAAGCCCCCCCATGCCCTCCCTTTGTGGTGGGGAGCATTATAATACAAAGTTCACAGAAACACTGTTGAATAAAAAAGTTTGTAATGACTGTAAGCGCATTGAGGATTTaaggaaatatttttatttttctgtctaACAGCCACATGTTTGTggaatttaaaatgtgtttacagtatgtgtaaGGTTTACGAAACATACTTGGCACCAAAGGGTCCGTATAAACTAAAAGgttaaacaattaatttattggAAAAACACTGTAGTACGCCCAATGTCCTAAATGTACTCTAATtgcacttgttttttttctaacgtGATGTCTGGCTTTAATGTTGTTCTCCATTTGAAGACTATTGCTGCAGGTGAAGACCTAATCACTCAGGTCAATAAAAGCATTAGGTTGCACTATAAACAACG

Function

symbol description
ncoa7 Enables nuclear receptor binding activity and nuclear receptor coactivator activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
PREDICTED: nuclear receptor coactivator 7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804684.1 False 1658 mRNA 0.46 7 13239239 13243225
XM_039804685.1 False 1696 mRNA 0.47 7 13239114 13243225
XM_039804686.1 True 1891 mRNA 0.45 6 13240467 13243225

Neighbor

gene id symbol gene type direction distance location
cmtm8b cmtm8 coding upstream 23759 13211579 ~ 13215355 (+)
ulk4 ulk4,LOC104943585 coding upstream 138645 12998150 ~ 13100469 (+)
mroh1 NA coding upstream 357711 12851758 ~ 12881403 (+)
ncam3 LOC104959682 coding upstream 390654 12842761 ~ 12848460 (+)
LOC120562667 LOC103369917,LOC102193495,LOC101464842,LOC108232169,LOC101465138,LOC102300261 coding upstream 419980 12808081 ~ 12819134 (+)
trmt11 trmt11 coding downstream 9472 13252697 ~ 13264092 (+)
rspo3 rspo3,LOC103353817 coding downstream 152213 13395438 ~ 13411921 (+)
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding downstream 171099 13414324 ~ 13418452 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 366393 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 815415 14058640 ~ 14068948 (+)
G72242 NA non-coding upstream 30080 13208828 ~ 13209034 (+)
G72199 NA non-coding upstream 114587 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 119013 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 293126 12896310 ~ 12945988 (+)
LOC120563130 NA non-coding upstream 388037 12848475 ~ 12851077 (+)
LOC120562636 NA non-coding downstream 202641 13445866 ~ 13448239 (+)
G72309 NA non-coding downstream 228526 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 232145 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 288900 13532125 ~ 13533002 (+)
LOC120561831 NA non-coding downstream 843378 14086603 ~ 14087796 (+)
G72204 ctnnb1,LOC103388302 other upstream 113217 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 465675 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 509888 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1528856 11708381 ~ 11710258 (+)
G71896 LOC103388795 other upstream 1622872 11599037 ~ 11616242 (+)
hint3 hint3 other downstream 2443 13245668 ~ 13250110 (+)
prelid3a prelid3a other downstream 224986 13468211 ~ 13471516 (+)
LOC120562530 ext1,LOC103135121 other downstream 316535 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 381223 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 510828 13754053 ~ 14046136 (+)

Expression


Co-expression Network