phc1 (phc1)


Basic Information

Item Value
gene id phc1
gene name phc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23601102 ~ 23608496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804699.1
aacacacacaaagaagaagaaagggatTTAAGAGGCGGAGTTTCGTTGGAGGCAAAAACCCTGAAAAGGGCTATCGTTGTTTGCAGTTAAAGCCAACATCGCAATATAAACTTGAGTGCACTTACGTGTGAAGGACACAAATACCAAGGAGAGCAAACATGGATGCAGGTGAAGACCAAAACACAGGCACCACCAATGGAAATCCTCAAACAAGCGGGACCTCTCGTGCACCCCAGATAGCCCACATGTCTCTATATGAGAGACAGGCTGTACAGgcTCTCCAAGCACTGCAAAGACAGCCAAATGCAGCTCAGTACTTCCAGCAGCTCATGTTGCAGCAGCAGATCAATAGTGCACAACTCCACAACTTGGCTGCTGTGCAACAGGCCACGCTTGCAGCCAGTCGTCAGTCCAATACCCCAAGTAACAGCATGTCCCAGACGACCACCACTGTAAGTTTTGTTGTCAATTTAAGCACCACATCTGCGGGAGGTACCATGACCAATCCCCGTCCTCACGGTCCAGCCACttctgcaacaacaacagctcTCAACCAATCAGTGTTGCTGGGTGGAAACTCTGCAGGACAAGGACAGATGTATCTTAGGGTCAACCGCTCTCTCAGGGCTCCCCTTGCCTCTCAGCTCATCTTCATGCCTGGTGGTACAGCAACAGTTGCCcagacacagcagcagcagcagcagcagcagcagcatgaaaTCGCACCTACCACAGCCCAGTCTGACAATGATCAGGTGCAGAATCTGGCCTTACACTGTGCTTCCGCTCCTAGAGCAGTTGCTGTAAAGGCTGAGCTTCCAGAGAGGAAAGATATAGCTAGATTTCCTCTTggtcaacagcagcagcagcagcagactttTGCCCAGACATCTCAGCAGCAGCAAGTGCAaccacaacagcagcaacaaatgGCCAAAACCAACTTTACTCCGCAGTCCAACGCAAACACTATGACTCTAAAGAATGTTACTCCTGCTGCTTCTGTAGCTCCTTCCTCCACTTCCTCTCCAGCACTCCCTCTTTCCCAACTCCTCCTGTCCTCCTCTGCTGCCCCCATGATCCTGGTGCCCACCTCAAATGTTCCTCCCACCACCCAGGGCTACACTATTGGCCCAGTGACACCAAAAGCCAACGTTAACACGCAGACTCTGGTGGTGCAGCCCCTACAACAGGCCAGCACTATTGCAGAAAAAGGACCTGTGCCAATCCAGCCCAAGACAGCTCAAGGACAACGCTTACCTGTACAGCTGCCTCCTCGACACCCACCTCCCATTCTCCCAGCTCCACCTAGCAACACCCAGCACAACACTCCCCACATCCCTGTGCAGCTTGTGGGAGCCAGGCAGGGCTTAACAGGAAACGCACAGGCTGTGGCCCTGGCACTGGCACGAAGCAGCACGGCCCAGGAAAGTACAGCTGGCGGAAATGTTAACACAGTCTCCAACAACAGCGCTATGATAAAGCCTGCTATTGGTTCTCTGAAGAGAAAATCTGACAGTGACGCACCAAATGAGATGGCGACAGAATCTTCAGACTCTACACCCATGAAAGATTCTGCTCCTCCCTTATCCCCTGCCCCGACAAAGGACTCGGCTCCTCCTTTAGCAGCTGCCTTCTCATCCCCTCCCACCCTGTCCTTGCCTCTGCCCTTGTCAAGAGTCGGGCATGGGGACAAAGACAGAGCGCCTGTTCCCCAGGCAGTGGTCAAACCTCAAGTCCTCACCCACCTCATAGAGGGCTTTGTCATCCAGGAGGGAGCTGAGCCCTTCCCTGTTGCTGGACTCCTCAAAGACAGAGATTTCGCCTTGGTTGGCCGCTCTGAAAATGGACCTCAATTGTTAAAGTGTGAGTACTGTGGAAGCCTTGCCCCAGCCAGCCAGTTCAGAGGATCAAAGAGGTTCTGTTCAAATACTTGTGCCAAGAGGTATAATGTGAGCTGCAGCCAACACTTCAAGACAAGCAGAGGGAGGAGTGGTGCAGGGCTGGCACCGCCTCCAGCACCCACTGAGAGCGCCGCTAGGCGAAGAGGCCCCTCTCGCAGGAGCAGTTCTAATATCACTAGTAATAACATTTCAAGCAGGCATCTATCTGTTAAGTGTCACTCTGAGTCCAGTCGCTCGGAGGACGTATCCAGCGAcggggaagaagaggaggacgaTTCTCCTTCACTGTCCCCAAGCTCTTCACACTCCTGCTCTAGAGCTGAGCGCAGCGCTCCTCCGTCTGACAGCTCAGCTCCTGGTAGCCTCCCACTAGATGGGGCTAACTTTCTCTCAGCAACTCCTGCTCAGTGGAGTGTGGAAGAAGTCTTCAGATTTATCTCTTCACTTCAAGGCTGTGAAGAGTTGGCTGCCCAGTTTCTGTCACAGGAAATAGACGGGCAGGCTCTGATGCTCCTGCGAGAGGACCATCTCATCTCCACCATGAATATCAAGCTGGGTCCTGCTCTCAAGATCTGTGCCTCTATCAACATCCTGCGTGAGTGATTCAGTGCGTACTTCAGAGGGACACCAGCATCGTTGTCATTGATAACGTCTCACTGAAATCAATACCTGGACCTCTTTTAGTAAGAAGTAAAAAAAGACTATGGGAAAAGTGAGGATTTTTCTTACAAAACAATGGTGCACTATCAGTCATGTGAAGACATGGGGATGGACAGTTTACGTTCTGGACATTGAATGTGCAAAAACATGTTGTATGTGTGAGTGGTGAGCATGGGCTGTCTAGAGTATCCATGTCAGTAGTGTTTgtcagttgttgtttttctgttgcTGTGAGTAGAAGTATGTATTCTCTAAGGCCCGGGACACattaacccgattatcggctatgggacagtctggcgaggtcagtgactcaaatctgttcagtgtgtcccgtgccgtcgtccgtctggggggctgtcggcattcattttggcc
>XM_039804700.1
acacacacaaagaagaagaaagggatTTAAGAGGCGGAGTTTCGTTGGAGGCAAAAACCCTGAAAAGGGCTATCGTTGTTTGCAGTTAAAGCCAACATCGCAATATAAACTTGAGTGCACTTACGTGTGAAGGACACAAATACCAAGGAGAGCAAACATGGATGCAGGTGAAGACCAAAACACAGGCACCACCAATGGAAATCCTCAAACAAGCGGGACCTCTCGTGCACCCCAGATAGCCCACATGTCTCTATATGAGAGACAGGCTGTACAGgcTCTCCAAGCACTGCAAAGACAGCCAAATGCAGCTCAGTACTTCCAGCAGCTCATGTTGCAGCAGCAGATCAATAGTGCACAACTCCACAACTTGGCTGCTGTGCAACAGGCCACGCTTGCAGCCAGTCGTCAGTCCAATACCCCAAGTAACAGCATGTCCCAGACGACCACCACTGTCAATTTAAGCACCACATCTGCGGGAGGTACCATGACCAATCCCCGTCCTCACGGTCCAGCCACttctgcaacaacaacagctcTCAACCAATCAGTGTTGCTGGGTGGAAACTCTGCAGGACAAGGACAGATGTATCTTAGGGTCAACCGCTCTCTCAGGGCTCCCCTTGCCTCTCAGCTCATCTTCATGCCTGGTGGTACAGCAACAGTTGCCcagacacagcagcagcagcagcagcagcagcagcatgaaaTCGCACCTACCACAGCCCAGTCTGACAATGATCAGGTGCAGAATCTGGCCTTACACTGTGCTTCCGCTCCTAGAGCAGTTGCTGTAAAGGCTGAGCTTCCAGAGAGGAAAGATATAGCTAGATTTCCTCTTggtcaacagcagcagcagcagcagactttTGCCCAGACATCTCAGCAGCAGCAAGTGCAaccacaacagcagcaacaaatgGCCAAAACCAACTTTACTCCGCAGTCCAACGCAAACACTATGACTCTAAAGAATGTTACTCCTGCTGCTTCTGTAGCTCCTTCCTCCACTTCCTCTCCAGCACTCCCTCTTTCCCAACTCCTCCTGTCCTCCTCTGCTGCCCCCATGATCCTGGTGCCCACCTCAAATGTTCCTCCCACCACCCAGGGCTACACTATTGGCCCAGTGACACCAAAAGCCAACGTTAACACGCAGACTCTGGTGGTGCAGCCCCTACAACAGGCCAGCACTATTGCAGAAAAAGGACCTGTGCCAATCCAGCCCAAGACAGCTCAAGGACAACGCTTACCTGTACAGCTGCCTCCTCGACACCCACCTCCCATTCTCCCAGCTCCACCTAGCAACACCCAGCACAACACTCCCCACATCCCTGTGCAGCTTGTGGGAGCCAGGCAGGGCTTAACAGGAAACGCACAGGCTGTGGCCCTGGCACTGGCACGAAGCAGCACGGCCCAGGAAAGTACAGCTGGCGGAAATGTTAACACAGTCTCCAACAACAGCGCTATGATAAAGCCTGCTATTGGTTCTCTGAAGAGAAAATCTGACAGTGACGCACCAAATGAGATGGCGACAGAATCTTCAGACTCTACACCCATGAAAGATTCTGCTCCTCCCTTATCCCCTGCCCCGACAAAGGACTCGGCTCCTCCTTTAGCAGCTGCCTTCTCATCCCCTCCCACCCTGTCCTTGCCTCTGCCCTTGTCAAGAGTCGGGCATGGGGACAAAGACAGAGCGCCTGTTCCCCAGGCAGTGGTCAAACCTCAAGTCCTCACCCACCTCATAGAGGGCTTTGTCATCCAGGAGGGAGCTGAGCCCTTCCCTGTTGCTGGACTCCTCAAAGACAGAGATTTCGCCTTGGTTGGCCGCTCTGAAAATGGACCTCAATTGTTAAAGTGTGAGTACTGTGGAAGCCTTGCCCCAGCCAGCCAGTTCAGAGGATCAAAGAGGTTCTGTTCAAATACTTGTGCCAAGAGGTATAATGTGAGCTGCAGCCAACACTTCAAGACAAGCAGAGGGAGGAGTGGTGCAGGGCTGGCACCGCCTCCAGCACCCACTGAGAGCGCCGCTAGGCGAAGAGGCCCCTCTCGCAGGAGCAGTTCTAATATCACTAGTAATAACATTTCAAGCAGGCATCTATCTGTTAAGTGTCACTCTGAGTCCAGTCGCTCGGAGGACGTATCCAGCGAcggggaagaagaggaggacgaTTCTCCTTCACTGTCCCCAAGCTCTTCACACTCCTGCTCTAGAGCTGAGCGCAGCGCTCCTCCGTCTGACAGCTCAGCTCCTGGTAGCCTCCCACTAGATGGGGCTAACTTTCTCTCAGCAACTCCTGCTCAGTGGAGTGTGGAAGAAGTCTTCAGATTTATCTCTTCACTTCAAGGCTGTGAAGAGTTGGCTGCCCAGTTTCTGTCACAGGAAATAGACGGGCAGGCTCTGATGCTCCTGCGAGAGGACCATCTCATCTCCACCATGAATATCAAGCTGGGTCCTGCTCTCAAGATCTGTGCCTCTATCAACATCCTGCGTGAGTGATTCAGTGCGTACTTCAGAGGGACACCAGCATCGTTGTCATTGATAACGTCTCACTGAAATCAATACCTGGACCTCTTTTAGTAAGAAGTAAAAAAAGACTATGGGAAAAGTGAGGATTTTTCTTACAAAACAATGGTGCACTATCAGTCATGTGAAGACATGGGGATGGACAGTTTACGTTCTGGACATTGAATGTGCAAAAACATGTTGTATGTGTGAGTGGTGAGCATGGGCTGTCTAGAGTATCCATGTCAGTAGTGTTTgtcagttgttgtttttctgttgcTGTGAGTAGAAGTATGTATTCTCTAAGGCCCGGGACACattaacccgattatcggctatgggacagtctggcgaggtcagtgactcaaatctgttcagtgtgtcccgtgccgtcgtccgtctggggggctgtcggcattcattttggcc

Function

symbol description
phc1 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 11. Orthologous to human PHC1 (polyhomeotic homolog 1).

NR:

description
PREDICTED: polyhomeotic-like protein 1 isoform X1

GO:

id name namespace
GO:0006622 protein targeting to lysosome biological_process
GO:0015761 mannose transmembrane transport biological_process
GO:0000323 lytic vacuole cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005537 mannose binding molecular_function
GO:0015578 mannose transmembrane transporter activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11456 PHC1, EDR1; polyhomeotic-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804699.1 True 2942 mRNA 0.52 14 23601102 23608496
XM_039804700.1 False 2929 mRNA 0.52 14 23601103 23608496

Neighbor

gene id symbol gene type direction distance location
m6pr NA coding upstream 1100 23593861 ~ 23600002 (+)
ephb6 ephb6,LOC102800023,LOC104960407 coding upstream 44619 23512555 ~ 23556483 (+)
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding upstream 92437 23498789 ~ 23508665 (+)
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding upstream 164058 23433649 ~ 23437044 (+)
sbk3 sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020 coding upstream 174457 23420347 ~ 23426645 (+)
clcn1b clcn1,LOC102795222 coding downstream 44072 23652568 ~ 23684905 (+)
zyx zyx,LOC102794270 coding downstream 111365 23719861 ~ 23736431 (+)
kel NA coding downstream 128482 23736978 ~ 23742258 (+)
LOC120561911 NA coding downstream 133871 23742367 ~ 23746558 (+)
nop2 nop2,LOC102793100 coding downstream 141449 23749945 ~ 23757019 (+)
G75301 NA non-coding upstream 106625 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 159876 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 246927 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 250335 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 258425 23339846 ~ 23342677 (+)
LOC120561968 NA non-coding downstream 22920 23631416 ~ 23633834 (+)
G75427 NA non-coding downstream 274681 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 334997 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 363831 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 419387 24027883 ~ 24031339 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 29859 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 107068 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 517955 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 689582 22900089 ~ 22911520 (+)
myh14 NA other upstream 781049 22785578 ~ 22820053 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 33059 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 159737 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 265413 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 418419 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 447941 24056437 ~ 24073698 (+)

Expression


Co-expression Network