LOC120561567 (mycbp)


Basic Information

Item Value
gene id LOC120561567
gene name mycbp
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27303310 ~ 27305006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804702.1
CATCCAGACCATTGCTTAAAGGAAGGTGATAAACGAAACTTAACTTAGTTCTCCGGTCCAGGCAGTTAACAGTCTATGAGCGGGACACAAAAACTTAACTTAACTATTTGAACAATTCAACTTTATCATTATGGCACATTATAGAGGCCCAGACCCTAAAAGGGAACAATTTCGGAGATACTTGGAGAAAGCTGGTGTTGTTGACAGTCTTACTAGTGTTCTAGTGGCTCTGTATGAACAACCTGAAAAGCCCAACAATGCTCTGGAATTTGTGAAGCAGCATCTCAATGCTGCTGGTCAGATGTCAGCAGACACTGAGGCTCTGCAGCAGGAGGTGGTTGACTTGAGGCAGAGGTGTGCACGTCTGGCAGAGGAAACCAAAGACCTCAAAGCAAAGCTGCAGCGTTACGAGCCTGAAGATGGAGCCACAGCCGACTAGACTAGAAAGCAACGCTTTGGCTTCATTATTatagtttttgtttattttgctgTCACTTTCAAGACACGAACCCCCTTTTAAGTGCAGGACAACAATTTTTAGGTATCTATTTTTGTAAATCTTATTTTCTACTATGTTTCTTAGAATTTAACTTATTctgtacatatatgtatatttctGTTGTGATTCTGATGTTTCTTGTTTGTTCAGTCTTCACACTTACACTTTATTTCAGATTCACACTTACACTTTATTTCCAAAGATCTGGTGTAAACGGTTGTAAAACACTCAAATGTAAGACACCAGTAAAATAAAGCACAGTCTTGTAATTAT

Function

symbol description
mycbp Predicted to enable transcription coactivator activity. Acts upstream of or within positive regulation of smoothened signaling pathway. Predicted to be active in nucleus. Is expressed in ciliary marginal zone. Orthologous to human MYCBP (MYC binding protein).

NR:

description
PREDICTED: C-Myc-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804702.1 True 772 mRNA 0.39 5 27303310 27305006

Neighbor

gene id symbol gene type direction distance location
utp11 utp11 coding upstream 288208 27013093 ~ 27015102 (+)
rspo1 rspo1 coding upstream 348026 26943236 ~ 26955284 (+)
dnali1 dnali1 coding upstream 413475 26886568 ~ 26889835 (+)
eva1ba eva1b,LOC104941913 coding upstream 578220 26712449 ~ 26725090 (+)
stk40 stk40,LOC103141542 coding upstream 627818 26656953 ~ 26675492 (+)
pnrc2 pnrc2,LOC100697533,LOC104941893,LOC101487357 coding downstream 46845 27351851 ~ 27355833 (+)
si:dkeyp-97a10.3 NA coding downstream 742637 28047643 ~ 28059160 (+)
LOC120562747 LOC103369304,LOC107379318,LOC104956022,LOC100707205,LOC107082966 coding downstream 769184 28074190 ~ 28077263 (+)
etfb etfb coding downstream 957861 28262867 ~ 28272836 (+)
vsig10l NA coding downstream 969067 28274073 ~ 28279197 (+)
G76419 NA non-coding upstream 11878 27290168 ~ 27291432 (+)
G76418 NA non-coding upstream 30483 27272558 ~ 27272827 (+)
G76412 NA non-coding upstream 246305 27056783 ~ 27057005 (+)
G76393 NA non-coding upstream 287203 27015140 ~ 27016107 (+)
G76338 NA non-coding upstream 437755 26864720 ~ 26865555 (+)
G76437 NA non-coding downstream 22072 27327078 ~ 27330040 (+)
G76426 NA non-coding downstream 57273 27362279 ~ 27363012 (+)
G76450 NA non-coding downstream 196950 27501956 ~ 27502357 (+)
G76451 NA non-coding downstream 215686 27520692 ~ 27521513 (+)
G76445 LOC103356458,LOC107729795,LOC105006133 non-coding downstream 250838 27555844 ~ 27565331 (+)
G76417 NA other upstream 14853 27284538 ~ 27288457 (+)
G76355 snip1 other upstream 416764 26883450 ~ 26886546 (+)
G76315 NA other upstream 487919 26808118 ~ 26815391 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other upstream 655695 26645384 ~ 26647615 (+)
G76192 NA other upstream 1160683 26139901 ~ 26142627 (+)
fam110d LOC104924711,LOC103367059 other downstream 562438 27867444 ~ 27885464 (+)
G76511 NA other downstream 643877 27948883 ~ 27952580 (+)
ago1 ago1,LOC102230823,LOC103367053,LOC107379324,LOC103388087,LOC107082980,LOC101466039,LOC104959479 other downstream 657684 27962690 ~ 27983714 (+)
LOC120561771 LOC103367052,LOC101466533,LOC107379323,LOC100706402,LOC103139281 other downstream 679047 27984053 ~ 28027526 (+)
G76581 LOC101157563,LOC103369309 other downstream 936777 28241783 ~ 28245161 (+)

Expression


Co-expression Network