selenbp1 (selenbp1)


Basic Information

Item Value
gene id selenbp1
gene name selenbp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42003852 ~ 42047544 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804733.1
GGATGTGTTTAAGTAGCGGTCAGAAGccaaatacagacacaaacgTAGAAACATTGAGAGAACTTGAAAATAAGTGAGAAAATGTCTAAAGTCTGTCCTAGGGGTCCATGGTGGTTCTGGTTCTCTCTGGGCTCTGGAGGGTTAACATGCAGGCTTGTCTGGGCAGTGtgtaagccccgccccctccttctctgattggctgtgctCTGATATGAAAGCAGTTCAACTCTGCCCCTGTCCCAGTTCATTCACAGCTGAGCTGACAGAGTCCAGAAAACCTGCAGCCTCTCATCAGGACAACATggCCAGCTGTTCAGGATGTGGACCCGGATACCGCAGCCCGCTGGACGCCATGAAaggtAGTCGAGAGGAGATTGTCTACCTGCCGTGTATCCACTGCAACACCGACAGTCTGAAGCCAGATTACCTCGCCACCGTCGATGTCGACCCAAAGTCTCCTACCTTCTGTCAGGTTATCCACCGGCTGCCGATGCCTAACCTGGGTGACGAGCTGCACCACTCGGGCTGGAACGCCTGCAGCAGCTGCTTCGGGGACGCCTCCAGGAAGAGGAACCGTCTGATTCTCCCGGCGCTGCTCTCCTCCCGAGTCTACGTGGTGGACGTGGGCACAGAGCCCCGGGCGCCGCAAATACACAAGATCGTGGATCCGGTGGATTTGTTCTGGAAGTGCGGCCTGGCGAACCCTCACACCACCCACTGTCTGGGCAACGGGCAGATCATGATCAGCTGTATCGGAGACCCGACCGGCAACGGCAAAGGGGGCTTCGTCCTGCTGGACGGCAAGACGTTCGAGGTGGTCGGGAACTGGGAGCACTCGGGGGAAGCAGTGAACTTTGGATACGACTTCTGGTACCAACCCCGACACAATGTGATGATCAGCACCGAGTGGGGCGCGCCCAAAGCTCTGGCTGGAGGGTTTAACCCCGCACACGTTAAAGAAGGTCTGTACGGCAGCTGCCTCCATGTTTGGGACTGGACCACGCACCGGAAGCTGCAGACGCTGGATCTGGGCGAGGACGGAGCCATTCCCCTCGAGGTCCGATTCCTCCACGACCCCGACGCCACCGAGGGATACGTGGGATGTGCTCTGCCGGGAACAGTTTACCGGTTCTACAGAACACCGaAAGGTGACTGGGCTGCAGAGAGAGTGATCAGCGTTCCCAATAAGAAGGTGGAGGGATGGGCACTGCCGGAGATGCCTgGTCTGATCACAGACATCCTGATCTCGTTAGACGACCGTTTTCTCTATTTCAGTAACTGGCTCCATGGTGACATCAGACAGTATGACATCACCGACAGGAGGAGCCCACGATTGGTCGGACAGGTGTTTCTGGGAGGAAGTCTCGTCAGTGACGGTCCAGTCCGAGTCCTGGAAGACCCCGAGAAGCAGTCGCAGCCCCCCCCACGCATCATCAAGgggAGGAGGGTCTCTGGAGGTCCCCAGATGTTGCAGCTGAGTTTAGACGGACGGAGACTTTACGTGACGACGTCTCTGTTCAGCGGCTGGGACAAGCAGTTCTACCCGGACATGGCCAAaGATGGGTCAGTGATGATGCAGATAGATGTGTCTGTCTCCGGCGGTCTTTCTCTGAATGAAAACTTCCTGGTTGATTTCGGTAAAGAACCGGACGGTCCGGCTCTGGCCCACGAGGTCCGATATCCCGGAGGAGACTGCACATCTGACATCTGGCTGTAGGAACATCTGGCTGTAGGAACATCTGGCTGTAGGAACATCTGGCTGTAGCAACACCTGTAGGAACACctgccaccagactccatgtaaataatcaggacttttatcatcataaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagctgtcttggttcatctttccactgttccaacaatc

Function

symbol description
selenbp1 Predicted to enable methanethiol oxidase activity and selenium binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; membrane; and nucleus. Is expressed in several structures, including brain; cardiovascular system; digestive system; endoderm; and pleuroperitoneal region. Orthologous to human SELENBP1 (selenium binding protein 1).

NR:

description
PREDICTED: selenium-binding protein 1 isoform X2

GO:

id name namespace
GO:0008430 selenium binding molecular_function

KEGG:

id description
K17285 SELENBP1; methanethiol oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804733.1 True 1912 mRNA 0.55 12 42003852 42047544

Neighbor

gene id symbol gene type direction distance location
myo1eb LOC104937078,LOC101474664,LOC102208361,LOC100691416,LOC102308324 coding downstream 343138 41614909 ~ 41660714 (-)
LOC120562505 LOC100690881,LOC102207812,LOC101474950 coding downstream 594065 41399810 ~ 41409787 (-)
LOC120562403 NA coding downstream 1115098 40884121 ~ 40888754 (-)
LOC120562399 NA coding downstream 1187297 40811235 ~ 40816555 (-)
pmvk pmvk coding downstream 1516506 40480066 ~ 40487346 (-)
LOC120562508 NA coding upstream 4431 42051975 ~ 42057548 (-)
LOC120562764 NA coding upstream 572359 42619903 ~ 42623838 (-)
LOC120562512 NA coding upstream 601905 42649449 ~ 42656684 (-)
G80629 NA non-coding downstream 26269 41927260 ~ 41977583 (-)
G80630 NA non-coding downstream 26747 41944527 ~ 41977105 (-)
G80626 NA non-coding downstream 118560 41884565 ~ 41885292 (-)
G80620 NA non-coding downstream 155206 41848344 ~ 41848646 (-)
G80607 NA non-coding downstream 331885 41670887 ~ 41671967 (-)
G80635 NA non-coding upstream 3272 42050816 ~ 42113814 (-)
G80638 NA non-coding upstream 13616 42061160 ~ 42061828 (-)
G80639 NA non-coding upstream 32017 42079561 ~ 42081822 (-)
G80641 NA non-coding upstream 36288 42083832 ~ 42084336 (-)
G80656 NA non-coding upstream 245461 42293005 ~ 42303897 (-)
LOC120562507 LOC105890369,LOC107379007,LOC105018870,LOC105012700,LOC103477466,LOC103369594 other downstream 4998 41638137 ~ 41998854 (-)
LOC120562392 LOC103132156,LOC108243373 other downstream 398464 41433041 ~ 41605388 (-)
LOC120562506 NA other downstream 582827 41412953 ~ 41421025 (-)
G80498 NA other downstream 899758 41103243 ~ 41104094 (-)
G80488 NA other downstream 986660 41015850 ~ 41017192 (-)
G80637 NA other upstream 52645 42100189 ~ 42108573 (-)
LOC120562509 c3-2,LOC102208541,LOC102799596,LOC100692186 other upstream 63436 42110980 ~ 42453873 (-)
LOC120562510 NA other upstream 326574 42374118 ~ 42387280 (-)
G80778 NA other upstream 628397 42675941 ~ 42770763 (-)
LOC120562513 LOC105920527,LOC103477479,LOC103369598,LOC106909307 other upstream 858990 42906534 ~ 42955865 (-)

Expression


Co-expression Network