stmn1b (stmn1,LOC100709726,LOC101465203,LOC105919219,LOC108245970,LOC102218266)


Basic Information

Item Value
gene id stmn1b
gene name stmn1,LOC100709726,LOC101465203,LOC105919219,LOC108245970,LOC102218266
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17741886 ~ 17747026 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804753.1
AATGAATGCAAAGAGCTCTGGtgacggttggggttaggaggTTTTTGCGCGAAGGTGCAGATGTTGGCGGTCTGAACAGAGAAGAAGTCAAGAAGAAGGTCTGCTCTTCAACCTGAGAGGCACTAGACGTTGTATCAAAGAAGCAAGAATTTCTGCTGAAATGGAAATCTGTGGAGACATCCAAGTGAAGGAGCTGAACAAGCGTACTTCTGGTCAAGCATTTGAGGTCATCCTGAGCCCCTCAACCCCAGATGCCAAGAGTGAATTTCCGTTAACCCCGCTCAAGAAAAAGGAAACATCACTGGATGAGATTAAAAGGAAACTGGAAGCGGCAGAAGAGAGACGCAAgAGCTACGAGGCTGAGGTGCTGAAACACTTGGCTGAGAAACGAGAGCACGAGAAGGAAGTCATCCAGAAGGCCATAGAAGAAGAATGCAACTTTAGCAAGCTGGCGAAAGAGAAACTCAATCAAAAGATGGAGGCAAACAAAGAGAACCGCACTGCAAGGATGGCAGCTCTCAATGAGAAATTCAAGGAGAAGGACAAGAAGCttgaggaagtgaggaagaacAAGGAGACAATGAAAGAAGTGGAGAATTAATTTGTTCATGATCTGGAAAGATaagctttattttttaaactggcATTTTCATGGTATTGTTTGTTGTGTTCGTTCTGATTGtgctgttaaataaaaagttggTTACACAATGTTAGATTGGGTGTGGATATAGTACAGTCTGATTTCTCTTCGCTTGTCTTGTAGATTTCTTATCGGCAGCTGATTAGACTAGTTTTTTGGTACAAGCTATATTTTTTCATTAAGAGGCATTCTGTTGTAATAAATTGGTCCTTATACTTCATACTGTTAAAATGCATCATACAATACTGTTCTGTACTGTTGGTAACGTTGCATGTGTGAATATACTGTACGATACCAAGTTTCAACCATTAAAGTCTATATTCACAATTTAA

Function

symbol description
stmn1 Enables tubulin binding activity. Involved in several processes, including establishment of skin barrier; negative regulation of signal transduction; and negative regulation of supramolecular fiber organization. Acts upstream of or within microtubule depolymerization and mitotic spindle organization. Located in extracellular exosome. Biomarker of hepatocellular carcinoma.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804753.1 True 975 mRNA 0.41 5 17741886 17747026

Neighbor

gene id symbol gene type direction distance location
LOC120561605 NA coding upstream 506 17739832 ~ 17741380 (+)
oprd1b oprd1,LOC104947907,LOC104938665,LOC103361913 coding upstream 118197 17617748 ~ 17623689 (+)
tcea3 tcea3,LOC103388456 coding upstream 148859 17584023 ~ 17593027 (+)
tent5ba fam46b,LOC102799042 coding upstream 174620 17562473 ~ 17567266 (+)
zdhhc18a zdhhc18,LOC100695947,LOC102211057 coding upstream 191692 17541057 ~ 17550194 (+)
si:dkey-34d22.1 LOC103360192 coding downstream 345277 18092303 ~ 18105749 (+)
LOC120562800 LOC103360186 coding downstream 423803 18170829 ~ 18172243 (+)
LOC120562798 LOC104954816,LOC108249991,LOC102795480 coding downstream 563046 18310072 ~ 18311498 (+)
has1 has1,LOC102795195,LOC103143133 coding downstream 567643 18314669 ~ 18318666 (+)
LOC120562815 NA coding downstream 640319 18387345 ~ 18388459 (+)
LOC120562054 NA non-coding upstream 236965 17500589 ~ 17504921 (+)
G73027 NA non-coding upstream 278859 17427828 ~ 17463027 (+)
G73019 NA non-coding upstream 338259 17392268 ~ 17403627 (+)
trnar-acg_16 NA non-coding upstream 373111 17368703 ~ 17368775 (+)
G72862 NA non-coding upstream 675975 17065589 ~ 17065911 (+)
G73186 NA non-coding downstream 176924 17923950 ~ 17926628 (+)
G73216 NA non-coding downstream 367689 18114715 ~ 18116323 (+)
G73230 LOC104960016 non-coding downstream 377968 18124994 ~ 18127318 (+)
G73231 NA non-coding downstream 380397 18127423 ~ 18127887 (+)
G73232 NA non-coding downstream 381993 18129019 ~ 18129219 (+)
G73123 phactr4 other upstream 94700 17645513 ~ 17647186 (+)
ubxn11 NA other upstream 280768 17456643 ~ 17461118 (+)
G73031 LOC103366415 other upstream 289318 17449585 ~ 17452568 (+)
G72750 LOC104952694,LOC106925895 other upstream 1669685 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 2181594 15553464 ~ 15560292 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 3904 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 652030 18399056 ~ 18420721 (+)
LOC120562807 NA other downstream 708548 18455574 ~ 18461326 (+)
LOC120562806 NA other downstream 719402 18466428 ~ 18470078 (+)
LOC120562796 NA other downstream 885376 18632402 ~ 18637307 (+)

Expression


Co-expression Network