s100a1 (s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918)


Basic Information

Item Value
gene id s100a1
gene name s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33283047 ~ 33286346 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804761.1
CTACTCTCCGGAGGGAGGTGCCTATCTGATTGTGATTGCTTTGCACACAGGTGAGAGGAGCCCATATATAACTGATGAGAAGAGTGCTGAAGCCACTTCCATCAGCAGCTGTTACCGTCACTATTCAGgatttaaaaatgtgttctcaCCTGCAAACTTCTATGGAGGGCCTCATCGCAGTGTTCCACTCCTACTCTGGAAAAGAAGGGGACAAGTACAAGCTGAGCAAAGCCGAGCTGAAGAACCTGTTGCAGGGAGAACTCTCCGAATTCCTAGCAGCCAGCAAGGACCCCATGGTGGTCGAGAAGATTATGCAAGAACTGGATGAAAACAAGGACGGTGAAGTGGACTTCCAGGAGTTTGTTGTTCTGGTTGCTGCACTGACCGTTGCCTGCAATGACTTCTTCATAGACGAGAATGAAAGCAGCATGAAATGCAAGAAGGACGCTGGTTCTAAGTGAGAAAAGTCGCATTGAATCAATAACCCTACCTTTACAATTGTATGCTAAGTGTCATGTTAGGGATGCAGCTTAATCCCGGCAACTTGTAATCACAGACGTCACTGCACACAAAACTCAATTCTTTGTCTAATGAGAAGTCCatcttaataaaaaagtcatctGGTTTTCA

Function

symbol description
s100a1 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to act upstream of or within regulation of heart contraction. Predicted to be active in cytoplasm. Is expressed in several structures, including gill; gut; hematopoietic system; olfactory epithelium; and renal system. Orthologous to human S100A1 (S100 calcium binding protein A1).

NR:

description
PREDICTED: protein S100-A1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23758 S100A1; protein S100-A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804761.1 True 630 mRNA 0.45 3 33283047 33286346

Neighbor

gene id symbol gene type direction distance location
tlr18 LOC103362575 coding upstream 4530 33263730 ~ 33278517 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding upstream 22130 33206707 ~ 33260917 (+)
lingo4b LOC104947071,LOC108243198 coding upstream 82405 33175909 ~ 33200642 (+)
onecutl LOC106524064,LOC104923936,LOC108243192 coding upstream 186909 33087190 ~ 33096138 (+)
hormad1 NA coding upstream 233910 33032239 ~ 33049137 (+)
prdm1a prdm1,LOC103362578,LOC100706221 coding downstream 186826 33473172 ~ 33489674 (+)
dctn3 dctn3,LOC102785116 coding downstream 270905 33557251 ~ 33566277 (+)
nt5c3a nt5c3a coding downstream 319500 33605846 ~ 33628945 (+)
trnap-agg_3 NA coding downstream 339585 33625931 ~ 33626002 (+)
trnap-agg_4 NA coding downstream 344693 33631039 ~ 33631110 (+)
G77894 LOC103369035,LOC103362570 non-coding upstream 152174 33115275 ~ 33130873 (+)
G77903 NA non-coding upstream 170982 33111426 ~ 33112065 (+)
G77900 NA non-coding upstream 176476 33106209 ~ 33106571 (+)
G77899 NA non-coding upstream 177414 33101903 ~ 33105633 (+)
G77895 NA non-coding upstream 183499 33097628 ~ 33099548 (+)
G77986 NA non-coding downstream 9905 33296251 ~ 33299542 (+)
G77991 NA non-coding downstream 38258 33324604 ~ 33325020 (+)
G77993 NA non-coding downstream 173676 33460022 ~ 33460235 (+)
G78001 NA non-coding downstream 207078 33493424 ~ 33493660 (+)
G78002 NA non-coding downstream 229363 33515709 ~ 33518515 (+)
G77888 NA other upstream 181513 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 861575 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1303138 31976318 ~ 31979909 (+)
G77447 NA other upstream 2146901 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2551438 30687338 ~ 30731609 (+)
bmper bmper other downstream 539741 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 608014 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 704196 33990542 ~ 34042648 (+)
G78200 NA other downstream 1243009 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 1552811 34839157 ~ 34856532 (+)

Expression


Co-expression Network