LOC120561614


Basic Information

Item Value
gene id LOC120561614
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14584035 ~ 14588452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804762.1
AGTTCAGTTAGTTCAGTTAGTTCATCACTGTACATTTGAGGACACTGCATTCATAAAGTTCCGGACAGAGAATTAAAGAGCCCTGAAGTGCAGACACAGACTACCTGATAGGAAAAGGCATCTCTAAGACACCCGTCACCATGTCAGATGATGGAGAAAATGGAACCACAACTACAGAAAATTATACAGATTATTTATCATATTATGATGTAGAAAGTTCGGCCTTTGCTCCTTGCAGCAAGGTTGGTTTGATggattttggcaaggtgtttCTGCCCACTCTCTACAGCTTGGTTTTCATCCTCGGCTTCctagGCAATGGCCTAGTGGTGTGTGTCCTGGTGAAGCATCGCAACCAGACCAACTTGACAGACATCTGCCTCTTCAACCTGGCTCTCGCCGACCTCCTCTTTGTCCTCACGCTGCCTTTCTACTCTCACTACTTGGTGGTCGGTCAATGGACTTTTGGAGACTTTATGTGCCGTTTCGCCTCTGGCTCCCATAACACTGGGTTCTTCAGCAGCATCTTCTTCATGGTCGTCATGACGCTGGACCGCTACGTGGTCATCATGCACACTCAAAAGATGGCCCGGTATCGCACTGTGAGGTTAGGCATCGTTATGACCGTGTCTGTCTGGATGCTGagcttgtgtgtctctctacCAGTTATTATCTTCACAAAGGTGAAAAATGAGTCTCATGGGCAGACTTGTAGCCATGCCCCAAACGACGCCTGGAAGAGTTATCACACCTTGACAATTAATGTATTGGGTCTCATGATTCCCTTGCTGGTGATGATAGTTTGCTACTCCAGGATCATCCCCATACTGATGAACATGAGGAGTGCAAAGAAGCACCGCGTCGTCAAGCTGATCGTCTCCATAGTGATTGCCTTTTTCATATTCTGGGCCCCATATAACATTACCCTTTTCTTGGTATTTCTGAAATCTGAAGGTGTATTGCCAAAGAATTGCAAAGTGGAATCAAATTTAGGGCTGTCAGTAACAGTGACTGAGACCTTTGCTTACACTCACTGCTGCCTGAACCCCATCATATACGCCTTTGTGGGACAAAAGTTCATGAAACGAGCCTTGCAGCTTTTGAAGAAATGGGTGCCTGGGATTCTCCTTCCCTCCAACAGAGATCTGTCAGATAGCTCATACAGAAAAAGCTCAAACGTGTCCAGGTCCTCTGTTGTCACCTCCAATCTCATCATGTAGGAGGTGGAGGGCAgattatgttgtatatattatGCTTTATGGACATCACCTGCAGAGTTGACATCTTTGATCCGGGTAGCCTTGTTATTAAGGCTACTACTGCCGAGCATGTTATCCTTATACATGTTGCATGATTTGTTTTTTCACTTCCAGTTTCCACCTGTGACAGCGTTATTCATCAGCATTGTCTTAAAGTGCCTGCCCCTGTACATATTATCTTTAGACCTTTTTGGTTTTACTTGCATTTTGAATTTGCACTGGAATATTTGGTTTGGACCATAAGATGCCAGATGTGTAGGCACATTAGGTGTGATCTGATGAGCATCATTATCTTCTATATGATCTCAGGTATTTTACAAAAGCTATGCAGTGTCCCTCCTTTTCCTGCTGAACATTGACTGAAACCATGAGCCTCTTGTTTGTGACAGCTTGTAACCACAAAGTTTGTTTATCTGTTCCAGATGTGTTTAAAACGTTCACACATTAGTTGATGAGCCTGCGAGATAAAGAAAAACATTCATACGGTATGGGAAAGCAATAGCTTTTGATATGATATATGGTATACCATTTCTAGAGAAACAATGTAGTCGGTTACAACATGgaattgttttgtttcttcACATTCCTTGTggaaaaagtgtttcattcaaATGTTTGATGATGAATCAAAGCCACAAAGTGAAACTAACACAGGGTTATGTAGCACCTTTCGCACATTCAAACGTCATCATTTATCATGGATTTAAATCTGTTGATGTGGAACAAAGTTTGGCTCGTTATTCACTACTGTAATTTTTGATATTTTCTCAATGCAGTATTTTGGAAAATTTGCATCTAGTGTTTACAGTAATACGTTATTTTGTCTTGGTTATTTTACTGCCATTTCAGATGTTATTTGcagaaaatacagtacatgtattcACATGTCAGCTTTACACTTAATGCCCTTTAAGCTTTTTTGTTCATGTTatgattggctgtagtgatttAGTTTGCCAGTGAAGGTTATTAAAGTTTTACATCTCTTCTCATATCCAAGAAGAGTACCAAACAATGA
>XM_039804763.1
ACCTCTCTGCACAACTAAGATGATGGAGAAAATGGAACCACAACTACAGAAAATTATACAGATTATTTATCATATTATGATGTAGAAAGTTCGGCCTTTGCTCCTTGCAGCAAGGTTGGTTTGATggattttggcaaggtgtttCTGCCCACTCTCTACAGCTTGGTTTTCATCCTCGGCTTCctagGCAATGGCCTAGTGGTGTGTGTCCTGGTGAAGCATCGCAACCAGACCAACTTGACAGACATCTGCCTCTTCAACCTGGCTCTCGCCGACCTCCTCTTTGTCCTCACGCTGCCTTTCTACTCTCACTACTTGGTGGTCGGTCAATGGACTTTTGGAGACTTTATGTGCCGTTTCGCCTCTGGCTCCCATAACACTGGGTTCTTCAGCAGCATCTTCTTCATGGTCGTCATGACGCTGGACCGCTACGTGGTCATCATGCACACTCAAAAGATGGCCCGGTATCGCACTGTGAGGTTAGGCATCGTTATGACCGTGTCTGTCTGGATGCTGagcttgtgtgtctctctacCAGTTATTATCTTCACAAAGGTGAAAAATGAGTCTCATGGGCAGACTTGTAGCCATGCCCCAAACGACGCCTGGAAGAGTTATCACACCTTGACAATTAATGTATTGGGTCTCATGATTCCCTTGCTGGTGATGATAGTTTGCTACTCCAGGATCATCCCCATACTGATGAACATGAGGAGTGCAAAGAAGCACCGCGTCGTCAAGCTGATCGTCTCCATAGTGATTGCCTTTTTCATATTCTGGGCCCCATATAACATTACCCTTTTCTTGGTATTTCTGAAATCTGAAGGTGTATTGCCAAAGAATTGCAAAGTGGAATCAAATTTAGGGCTGTCAGTAACAGTGACTGAGACCTTTGCTTACACTCACTGCTGCCTGAACCCCATCATATACGCCTTTGTGGGACAAAAGTTCATGAAACGAGCCTTGCAGCTTTTGAAGAAATGGGTGCCTGGGATTCTCCTTCCCTCCAACAGAGATCTGTCAGATAGCTCATACAGAAAAAGCTCAAACGTGTCCAGGTCCTCTGTTGTCACCTCCAATCTCATCATGTAGGAGGTGGAGGGCAgattatgttgtatatattatGCTTTATGGACATCACCTGCAGAGTTGACATCTTTGATCCGGGTAGCCTTGTTATTAAGGCTACTACTGCCGAGCATGTTATCCTTATACATGTTGCATGATTTGTTTTTTCACTTCCAGTTTCCACCTGTGACAGCGTTATTCATCAGCATTGTCTTAAAGTGCCTGCCCCTGTACATATTATCTTTAGACCTTTTTGGTTTTACTTGCATTTTGAATTTGCACTGGAATATTTGGTTTGGACCATAAGATGCCAGATGTGTAGGCACATTAGGTGTGATCTGATGAGCATCATTATCTTCTATATGATCTCAGGTATTTTACAAAAGCTATGCAGTGTCCCTCCTTTTCCTGCTGAACATTGACTGAAACCATGAGCCTCTTGTTTGTGACAGCTTGTAACCACAAAGTTTGTTTATCTGTTCCAGATGTGTTTAAAACGTTCACACATTAGTTGATGAGCCTGCGAGATAAAGAAAAACATTCATACGGTATGGGAAAGCAATAGCTTTTGATATGATATATGGTATACCATTTCTAGAGAAACAATGTAGTCGGTTACAACATGgaattgttttgtttcttcACATTCCTTGTggaaaaagtgtttcattcaaATGTTTGATGATGAATCAAAGCCACAAAGTGAAACTAACACAGGGTTATGTAGCACCTTTCGCACATTCAAACGTCATCATTTATCATGGATTTAAATCTGTTGATGTGGAACAAAGTTTGGCTCGTTATTCACTACTGTAATTTTTGATATTTTCTCAATGCAGTATTTTGGAAAATTTGCATCTAGTGTTTACAGTAATACGTTATTTTGTCTTGGTTATTTTACTGCCATTTCAGATGTTATTTGcagaaaatacagtacatgtattcACATGTCAGCTTTACACTTAATGCCCTTTAAGCTTTTTTGTTCATGTTatgattggctgtagtgatttAGTTTGCCAGTGAAGGTTATTAAAGTTTTACATCTCTTCTCATATCCAAGAAGAGTACCAAACAATGA
>XM_039804764.1
AGTTCAGTTAGTTCAGTTAGTTCATCACTGTACATTTGAGGACACTGCATTCATAAAGTTCCGGACAGAGAATTAAAGAGCCCTGAAGTGCAGACACAGACTACCTGATAGGAAAAGGCATCTCTAAGACACCCGTCACCATGTCAGGCAATGGCCTAGTGGTGTGTGTCCTGGTGAAGCATCGCAACCAGACCAACTTGACAGACATCTGCCTCTTCAACCTGGCTCTCGCCGACCTCCTCTTTGTCCTCACGCTGCCTTTCTACTCTCACTACTTGGTGGTCGGTCAATGGACTTTTGGAGACTTTATGTGCCGTTTCGCCTCTGGCTCCCATAACACTGGGTTCTTCAGCAGCATCTTCTTCATGGTCGTCATGACGCTGGACCGCTACGTGGTCATCATGCACACTCAAAAGATGGCCCGGTATCGCACTGTGAGGTTAGGCATCGTTATGACCGTGTCTGTCTGGATGCTGagcttgtgtgtctctctacCAGTTATTATCTTCACAAAGGTGAAAAATGAGTCTCATGGGCAGACTTGTAGCCATGCCCCAAACGACGCCTGGAAGAGTTATCACACCTTGACAATTAATGTATTGGGTCTCATGATTCCCTTGCTGGTGATGATAGTTTGCTACTCCAGGATCATCCCCATACTGATGAACATGAGGAGTGCAAAGAAGCACCGCGTCGTCAAGCTGATCGTCTCCATAGTGATTGCCTTTTTCATATTCTGGGCCCCATATAACATTACCCTTTTCTTGGTATTTCTGAAATCTGAAGGTGTATTGCCAAAGAATTGCAAAGTGGAATCAAATTTAGGGCTGTCAGTAACAGTGACTGAGACCTTTGCTTACACTCACTGCTGCCTGAACCCCATCATATACGCCTTTGTGGGACAAAAGTTCATGAAACGAGCCTTGCAGCTTTTGAAGAAATGGGTGCCTGGGATTCTCCTTCCCTCCAACAGAGATCTGTCAGATAGCTCATACAGAAAAAGCTCAAACGTGTCCAGGTCCTCTGTTGTCACCTCCAATCTCATCATGTAGGAGGTGGAGGGCAgattatgttgtatatattatGCTTTATGGACATCACCTGCAGAGTTGACATCTTTGATCCGGGTAGCCTTGTTATTAAGGCTACTACTGCCGAGCATGTTATCCTTATACATGTTGCATGATTTGTTTTTTCACTTCCAGTTTCCACCTGTGACAGCGTTATTCATCAGCATTGTCTTAAAGTGCCTGCCCCTGTACATATTATCTTTAGACCTTTTTGGTTTTACTTGCATTTTGAATTTGCACTGGAATATTTGGTTTGGACCATAAGATGCCAGATGTGTAGGCACATTAGGTGTGATCTGATGAGCATCATTATCTTCTATATGATCTCAGGTATTTTACAAAAGCTATGCAGTGTCCCTCCTTTTCCTGCTGAACATTGACTGAAACCATGAGCCTCTTGTTTGTGACAGCTTGTAACCACAAAGTTTGTTTATCTGTTCCAGATGTGTTTAAAACGTTCACACATTAGTTGATGAGCCTGCGAGATAAAGAAAAACATTCATACGGTATGGGAAAGCAATAGCTTTTGATATGATATATGGTATACCATTTCTAGAGAAACAATGTAGTCGGTTACAACATGgaattgttttgtttcttcACATTCCTTGTggaaaaagtgtttcattcaaATGTTTGATGATGAATCAAAGCCACAAAGTGAAACTAACACAGGGTTATGTAGCACCTTTCGCACATTCAAACGTCATCATTTATCATGGATTTAAATCTGTTGATGTGGAACAAAGTTTGGCTCGTTATTCACTACTGTAATTTTTGATATTTTCTCAATGCAGTATTTTGGAAAATTTGCATCTAGTGTTTACAGTAATACGTTATTTTGTCTTGGTTATTTTACTGCCATTTCAGATGTTATTTGcagaaaatacagtacatgtattcACATGTCAGCTTTACACTTAATGCCCTTTAAGCTTTTTTGTTCATGTTatgattggctgtagtgatttAGTTTGCCAGTGAAGGTTATTAAAGTTTTACATCTCTTCTCATATCCAAGAAGAGTACCAAACAATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG:

id description
K04176 CCR1, CD191; C-C chemokine receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804762.1 True 2277 mRNA 0.41 3 14584813 14588452
XM_039804763.1 False 2149 mRNA 0.41 3 14584035 14588452
XM_039804764.1 False 2109 mRNA 0.41 2 14584813 14588452

Neighbor

gene id symbol gene type direction distance location
zgc:110410 LOC104941306 coding upstream 515087 14058640 ~ 14068948 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding upstream 962691 13609618 ~ 13621344 (+)
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding upstream 1165583 13414324 ~ 13418452 (+)
rspo3 rspo3,LOC103353817 coding upstream 1172114 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 1319943 13252697 ~ 13264092 (+)
si:cabz01093077.1 NA coding downstream 1791 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 12437 14600889 ~ 14603683 (+)
LOC120561930 NA coding downstream 15500 14603952 ~ 14607904 (+)
LOC120561617 NA coding downstream 23460 14611912 ~ 14619881 (+)
LOC120562066 NA coding downstream 114971 14703423 ~ 14704824 (+)
G72520 NA non-coding upstream 66138 14514667 ~ 14517897 (+)
G72466 NA non-coding upstream 420291 14163536 ~ 14163744 (+)
LOC120561831 NA non-coding upstream 496239 14086603 ~ 14087796 (+)
G72319 NA non-coding upstream 1051033 13532125 ~ 13533002 (+)
G72314 NA non-coding upstream 1100924 13475370 ~ 13483111 (+)
G72551 NA non-coding downstream 15532 14603984 ~ 14604638 (+)
G72559 NA non-coding downstream 44628 14633080 ~ 14633375 (+)
G72560 NA non-coding downstream 45725 14634177 ~ 14635023 (+)
G72561 LOC103365327 non-coding downstream 49418 14637870 ~ 14640768 (+)
LOC120562067 NA non-coding downstream 55924 14644376 ~ 14645788 (+)
G72506 NA other upstream 157855 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 213944 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 439739 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 537899 13754053 ~ 14046136 (+)
LOC120562711 eif3h other upstream 895521 13624448 ~ 13688514 (+)
LOC120561718 LOC107101581 other downstream 38026 14626478 ~ 14632721 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 965012 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 1429907 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 2861133 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 2868191 17456643 ~ 17461118 (+)

Expression


Co-expression Network