LOC120561617


Basic Information

Item Value
gene id LOC120561617
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14611912 ~ 14619881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804766.1
GCCTTACACCTTGTCTTCCGTGGTGTGCAAACCAATTGTCATTTCTCGTACATAATGAGCTTGGGTGCATTGCTGATAATTGATTTGATCTGGCCGTATACATCAGCATCTTGTGATCCAGAAGAAATACAACGATCAGCTATCTTCTTATCAGCACTGGCAGgaaGCTCACCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAGTGAGAATCCAAAAGACTTACCAAGCTCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGTTATGGAGCCAATTTTATTCCCACCCTCTATGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTAGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGCGGTCCTTGGTATTTATAATATAGTTTTTTACAGTGGGATCTTTTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAGGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATTATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATTCCACAGCAACTTCGAATGACAACACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGTTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGCCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCTTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGACGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGGTGGGTTgttatttctgtctgtgtggtcATCTCCACAATGAGGGAATTTCTTGTGAAGTCAAATAGTCAAGTTGAGAAACAATTCTTGCTAATTCTGACTTCTTATGGGCCATTTTAGGACTTCAGTTCATTTTTCACTCAGTTGGCTTTAGGTTGATTTTGAGTTTTGGAAATGTATGAATATGACAAAATACATGTGACAATGTATCTTAAATCTTATGGTATGATTATGTAATCGAGTAATACAAACACAGTGTACCCgtgtataaaagtaaaaggtaTATATCTTTATACTTTTATAAGTTCTATAGACTACATAAGAATGTACAATggaaatgtactgtaaatatggTTCCGGATATGCAAGATCTTTAAAAGAGTTGATGAAGCAGATTGTATCTGCAATTTTAAAGGTCAAAAATAGTCCTGAAATAAATGTCTTATCTTTTTTGAGAGACAAACTCAGATGCTGACCAGTTCCTTGCAGTTCAAACACCAGTAAGAGAATTGAAACAAATAGCTAAACATGGCTAAtagcaaaaagaagaaaaaaaagcttttgcaAGTATTGCAAG
>XM_039804767.1
GGAGAATTTTTCTGGCATGTAGTAACTCATAATATACCGCTGgaaGCTCACCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAGTGAGAATCCAAAAGACTTACCAAGCTCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGTTATGGAGCCAATTTTATTCCCACCCTCTATGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTAGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGCGGTCCTTGGTATTTATAATATAGTTTTTTACAGTGGGATCTTTTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAGGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATTATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATTCCACAGCAACTTCGAATGACAACACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGTTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGCCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCTTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGACGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGGTGGGTTgttatttctgtctgtgtggtcATCTCCACAATGAGGGAATTTCTTGTGAAGTCAAATAGTCAAGTTGAGAAACAATTCTTGCTAATTCTGACTTCTTATGGGCCATTTTAGGACTTCAGTTCATTTTTCACTCAGTTGGCTTTAGGTTGATTTTGAGTTTTGGAAATGTATGAATATGACAAAATACATGTGACAATGTATCTTAAATCTTATGGTATGATTATGTAATCGAGTAATACAAACACAGTGTACCCgtgtataaaagtaaaaggtaTATATCTTTATACTTTTATAAGTTCTATAGACTACATAAGAATGTACAATggaaatgtactgtaaatatggTTCCGGATATGCAAGATCTTTAAAAGAGTTGATGAAGCAGATTGTATCTGCAATTTTAAAGGTCAAAAATAGTCCTGAAATAAATGTCTTATCTTTTTTGAGAGACAAACTCAGATGCTGACCAGTTCCTTGCAGTTCAAACACCAGTAAGAGAATTGAAACAAATAGCTAAACATGGCTAAtagcaaaaagaagaaaaaaaagcttttgcaAGTATTGCAAG
>XM_039804768.1
GCAAGTCAAATCAACAGgaaGCTCACCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAGTGAGAATCCAAAAGACTTACCAAGCTCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGTTATGGAGCCAATTTTATTCCCACCCTCTATGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTAGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGCGGTCCTTGGTATTTATAATATAGTTTTTTACAGTGGGATCTTTTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAGGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATTATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATTCCACAGCAACTTCGAATGACAACACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGTTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGCCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCTTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGACGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGGTGGGTTgttatttctgtctgtgtggtcATCTCCACAATGAGGGAATTTCTTGTGAAGTCAAATAGTCAAGTTGAGAAACAATTCTTGCTAATTCTGACTTCTTATGGGCCATTTTAGGACTTCAGTTCATTTTTCACTCAGTTGGCTTTAGGTTGATTTTGAGTTTTGGAAATGTATGAATATGACAAAATACATGTGACAATGTATCTTAAATCTTATGGTATGATTATGTAATCGAGTAATACAAACACAGTGTACCCgtgtataaaagtaaaaggtaTATATCTTTATACTTTTATAAGTTCTATAGACTACATAAGAATGTACAATggaaatgtactgtaaatatggTTCCGGATATGCAAGATCTTTAAAAGAGTTGATGAAGCAGATTGTATCTGCAATTTTAAAGGTCAAAAATAGTCCTGAAATAAATGTCTTATCTTTTTTGAGAGACAAACTCAGATGCTGACCAGTTCCTTGCAGTTCAAACACCAGTAAGAGAATTGAAACAAATAGCTAAACATGGCTAAtagcaaaaagaagaaaaaaaagcttttgcaAGTATTGCAAG

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804766.1 True 1952 mRNA 0.43 3 14611912 14619881
XM_039804767.1 False 1831 mRNA 0.43 3 14617190 14619881
XM_039804768.1 False 1806 mRNA 0.43 3 14616417 14619881

Neighbor

gene id symbol gene type direction distance location
LOC120561930 NA coding upstream 4008 14603952 ~ 14607904 (+)
LOC120561707 NA coding upstream 8229 14600889 ~ 14603683 (+)
si:cabz01093077.1 NA coding upstream 17928 14590243 ~ 14593984 (+)
LOC120561614 NA coding upstream 23460 14584035 ~ 14588452 (+)
zgc:110410 LOC104941306 coding upstream 542964 14058640 ~ 14068948 (+)
LOC120562066 NA coding downstream 83542 14703423 ~ 14704824 (+)
dnah5 dnah5 coding downstream 142489 14762370 ~ 14874113 (+)
trnae-cuc_16 NA coding downstream 406701 15026582 ~ 15026653 (+)
irx2a irx2,LOC102783739 coding downstream 788297 15408178 ~ 15414047 (+)
LOC120562533 lpcat1,LOC103360438,LOC100699650 coding downstream 999635 15619516 ~ 15653052 (+)
G72551 NA non-coding upstream 7274 14603984 ~ 14604638 (+)
G72520 NA non-coding upstream 94015 14514667 ~ 14517897 (+)
G72466 NA non-coding upstream 448168 14163536 ~ 14163744 (+)
LOC120561831 NA non-coding upstream 524116 14086603 ~ 14087796 (+)
G72319 NA non-coding upstream 1078910 13532125 ~ 13533002 (+)
G72559 NA non-coding downstream 13199 14633080 ~ 14633375 (+)
G72560 NA non-coding downstream 14296 14634177 ~ 14635023 (+)
G72561 LOC103365327 non-coding downstream 17989 14637870 ~ 14640768 (+)
LOC120562067 NA non-coding downstream 24495 14644376 ~ 14645788 (+)
G72634 NA non-coding downstream 380790 15000671 ~ 15003134 (+)
G72506 NA other upstream 185732 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 241821 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 467616 14133584 ~ 14144296 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other upstream 565776 13754053 ~ 14046136 (+)
LOC120562711 eif3h other upstream 923398 13624448 ~ 13688514 (+)
LOC120561718 LOC107101581 other downstream 6597 14626478 ~ 14632721 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other downstream 933583 15553464 ~ 15560292 (+)
G72750 LOC104952694,LOC106925895 other downstream 1398478 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 2829704 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 2836762 17456643 ~ 17461118 (+)

Expression


Co-expression Network