LOC120561621 (LOC105018833)


Basic Information

Item Value
gene id LOC120561621
gene name LOC105018833
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19440837 ~ 19446117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804777.1
CAAGTGATGGATAGAGACGCTGAAAGTGCTGAGCAGACGCAGGTTGATGGACTTAAAGAGATCGCTGAAAGACCAAAATGGGACAATAAAGTTCAATATTTGCTAACCTGCATAGGTTTTGCTGTGGGACTTGGCAATGTGTGGAGATTTCCATATTTGTGTCAAATCTATGGTGGAGGGGCGTTTCTGATTCCTTATGCCATTGCCTTGGTGTTTGAGGGACTTCCTCTGCTGCACATGGAACTGGCCATCGGACAACGACTCCGCATGGGAAGTGTTGGAGTGTGGAATTCAATCTCCCCTTATCTGGGAGGTTTAGGTGTGGCTTCCTTGGTAGTATCCTTCCTAGTTGGTCTGTTCTACAACATGATCTTGGCCTGGATCCTCTGGTACTTCTTCCACTCCTTTCAAAATCCACTTCCCTGGAGGGACTGCCCATTAAATTTGAATCGGACTGGCTGGGTAAGTGAATGTGAGAAGAGCTCGTCAGTGAACTATTTCTGGTATCGTGAAACACTGAACATTACGCCTAACATTGAGACCAGCGGGTCCGTACAGTGGTGGCTAGTGCTGTGTCTTGCATCTGCTTGGTGCCTCGTGTACATCTGCTTCATTCGTGGAATTGAGACTATTGGGAAGgctATTTATGTCACAGCCACCTTTCCGTATCTTGTTCTGACCATCTTCTTGGTCAGATCATTGACTCTGGCTGGGGCCACAGATGGCTTAATATATCTCTTCACTCCAAATTGGGAAACCCTGAAAAACCCTGAGGTCTGGTTGGATGCTGCTACTCAGatctttttctctttgtctttggCCTTTGGGGGACTTATTGCTTTTTCCAGTTACAATGCTCAAAAGAATAACTGTGAGAGAGATGCCCTAATTGTTGGATGTGTGAACAGTTTTACGTCAATTTATGCATCAATTCCTATTTTTGCCATTCTTGGATTTAAAGCAAATGAAAACTACAATGACTGCAAAAATTGGAACATACTGACATTGACTAATTCATTCAACATTGGGGATGAGAACATAACCCTAGAAAACTATGACGACTGGTTCAAGTATCTCAACACAACTGATCCCTCGGAGGTCAAAAGCCTCAATCTAAAGACATGTAACCTGCAGACTTTCCTGGACCAGAGCGCCTCTGGAACCGGACTGGCCTTCATTGTGTTCACTGAGGCGGTGATAAAAATGCCAGGCTCTCAGGTGTGGGCGGTGCTCTTCTTTATCATGCTCTTCAGCCTGGGCCTCTCCTCTATGTTTGGAAATCTAGAGGGGGTCCTTACTCCTCTGCTTGACCTGCACATGATTCCACCCTGGATTCCTAAAGAAATTTTCACAGGGTTAATATGTCTCACCTCCTTTACTGTGGCCCTAATCTTTACTTTGGGCTCTGGAAACTACTGGCTGGAGATTTTCAACAGTTACGTGGGATCCATGCCTCTGCTCATCATAGCATTCTTTGAGATCATTAGTGTGGTATACATCTATGGAATAAACAAGTTTAATGACGACATTGAATGGATGTCAGGTCGGAGACCAAACATCTACTGGCAGGCCACTTGGCGCTTCATCAGTCCTTTCATGCTTCTGGTGGTTTTTGTGGCATATGTAGTAGTCGAGGCTGAAAAACAACCTACATATAACGCCTGGAACCCAGATTACGTGCAATTCCCCCTTGCTGATGTTCAGCCCTATCCTGAATGGGTTTTTGTTATCTGTGTTCTCTTATCTGTCCTTCCTGTTGTATCCATTCCTCTTGTGGCTCTCTACAAATTAATGGGCTTCCTGAAGAAGTACATCATGAACAGGCACAACCAAAATCCATATACAAATGAATGATGTCATGGAGAATTGTAAGGGAAGTGTTTAGCTGCTTTATCTGAGTGGTGGTCAGGACTACCAGTGGTAGGCTACATACCATT

Function

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT3 isoform X1

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804777.1 True 1937 mRNA 0.45 12 19440837 19446117

Neighbor

gene id symbol gene type direction distance location
slc6a19b LOC104965566 coding upstream 604 19434690 ~ 19440233 (+)
rxrbb LOC104965568,LOC103368225,LOC101470553,LOC100711502 coding upstream 101123 19328950 ~ 19339714 (+)
LOC120563155 NA coding upstream 160215 19278315 ~ 19280622 (+)
LOC120562959 NA coding upstream 171068 19245358 ~ 19269769 (+)
LOC120562666 LOC102206297,LOC106517725,LOC104965579 coding upstream 219885 19211495 ~ 19220952 (+)
LOC120562733 LOC100705529,LOC103366949,LOC102296000 coding downstream 13438 19459555 ~ 19477316 (+)
sp8b sp8,LOC101158882,LOC104926695,LOC101468530,LOC107378685 coding downstream 131435 19577552 ~ 19582754 (+)
macc1 macc1 coding downstream 143986 19590103 ~ 19595355 (+)
twist1b twist1,LOC100712142,LOC103366955 coding downstream 165629 19611746 ~ 19613152 (+)
ankrd28b ankrd28 coding downstream 229026 19675143 ~ 19693798 (+)
G73606 NA non-coding upstream 120789 19319438 ~ 19320048 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding upstream 164321 19272727 ~ 19276516 (+)
LOC120562631 fxyd7,LOC103388498 non-coding upstream 278033 19159464 ~ 19162804 (+)
LOC120562629 NA non-coding upstream 281819 19158475 ~ 19159018 (+)
LOC120562630 NA non-coding upstream 282468 19148521 ~ 19158369 (+)
LOC120562732 NA non-coding downstream 7652 19453769 ~ 19456616 (+)
LOC120562701 NA non-coding downstream 168386 19614503 ~ 19625611 (+)
G73776 hdac9 non-coding downstream 188756 19634873 ~ 19639459 (+)
G73836 NA non-coding downstream 374118 19820235 ~ 19820591 (+)
G73871 NA non-coding downstream 572992 20019109 ~ 20052006 (+)
hcst LOC104925504,LOC104961397 other upstream 248735 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 281842 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 578879 18833245 ~ 18861958 (+)
proser3 NA other upstream 612149 18819201 ~ 18828688 (+)
LOC120562824 NA other upstream 694162 18744662 ~ 18746675 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 1050 19447167 ~ 19453283 (+)
G73779 hdac9 other downstream 200858 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 746573 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 768471 20214588 ~ 20226991 (+)
gra NA other downstream 876213 20322330 ~ 20325961 (+)

Expression


Co-expression Network