efna3b (efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981)


Basic Information

Item Value
gene id efna3b
gene name efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21975192 ~ 22033267 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804782.1
ATCTGGTAGCTGGGGGATTCAAAGCTTTCTACTTTTACACTAGCAGAGGAGGTCGAATAGTTGACAAAAAACTTCAAGTCGCAGTGATGCCTGATGTGCTGCGACTCGGCCACAATATTGGAGGAATGCGCTTTGGTCGCTCGCAGTGGGTGGAGTTAGAAAGTGAACGAGCGCTGCCTAccaaacagagagaggagaaggaggagagagagaaaaaggaaagagacgGGTGGGCAGGCTGTTCACCGTAAACGATGGTTGTCGGATAGAGTCTTGAAGACCTAATGAAACTGGCTGGTTGAATTGTTTGCAGCGATTATAGAGCTCCGTAGCCCGGCGTGCTCTACAGCTCTCGGATCCCTGGATGGAAAAACTGCAGCAGCACGCAGATACagagtttaaaaaagaagaataagAGGACTTGCTTAAAACCTATATATTATTTTACTAGCGTTTTTTTCACCCTTCATTTTACCTACCAGTAAGCCTTTTTCACGTCAGCAGCAACTCTTTCGCAGCGGACAGGACCGTTTCATGTTCGGAGCAAGACCAGCCTCCCACTTGGACCCAATACCGGCCTCCCGCACTCTTCTGGCGGGCTCAGAAGCAGCAGTTCCCGGCATTTGCTGGGATGTTTGAGTCGCGTTGTTTGGTGGGGTGAAGGGACCGAGAGAGTGGCCGGAGAGACCAAAGGGACGGAGGCCGAGAGAGGAGCCGAGAGCATGGCTCTGGTAGTGCTGTCTCTCTGGGTGCTAACGAGTCTCACCTGGGCGGACGTGGTCCCGGTGTCAGCCAACAGGCATTCCGTTTACTGGAACAGCTCCAACATACATCTGCGTAGGGAGGGCTACACAATGCAGGTGAACGTCAACGACTACCTGGACATCTACTGCCCTCATTACAATGACAGCCAGCGCATGGTGGGCACCGGCGAGCAGTACGTCCTCTACATGGTCAGTTACCGCGGTTACAGGAACTGCGACCCCCAGCTGGGCTTCAAGAGGTGGGAGTGTAACCGACCCCACGCCCCCCACGCGCCCATCAAGTTCTCTGAGAAGTTCCAGCGCTACAGCGCCTTCTCGCTGGGCTACGAGTTCCACGTTGGACAGGAGTACTACTACATCTcCACGCCCACCCACCATCACGGCCGCAGCTGTCTGAGACTACGAGTATACGTCTGCTGCTCCACGGcctctGACGTGGATGATGACCCAGAGCCTACAGAACCAGACTACACGCTTAGACCAGGCCTAAAAATTGACGATATTGATGAATTTAACCCTTTTGTTCCCAAGCTGGAGAAGAGCGTTAGCGGAAGCAGCCCAACCAGGGATCGCCTTCTCCTCACCGTGACGATGCTCCTTCTGGCCGCTCTCTTCATCTCCTAGCAACGGCCATCCCATCAGCGTCACCATGCCAACTAGCCTTGGGAGGGCGTACAGTATCAGTGGGTGGGAGAG
>XM_039804783.1
ATCTGGTAGCTGGGGGATTCAAAGCTTTCTACTTTTACACTAGCAGAGGAGGTCGAATAGTTGACAAAAAACTTCAAGTCGCAGTGATGCCTGATGTGCTGCGACTCGGCCACAATATTGGAGGAATGCGCTTTGGTCGCTCGCAGTGGGTGGAGTTAGAAAGTGAACGAGCGCTGCCTAccaaacagagagaggagaaggaggagagagagaaaaaggaaagagacgGGTGGGCAGGCTGTTCACCGTAAACGATGGTTGTCGGATAGAGTCTTGAAGACCTAATGAAACTGGCTGGTTGAATTGTTTGCAGCGATTATAGAGCTCCGTAGCCCGGCGTGCTCTACAGCTCTCGGATCCCTGGATGGAAAAACTGCAGCAGCACGCAGATACagagtttaaaaaagaagaataagAGGACTTGCTTAAAACCTATATATTATTTTACTAGCGTTTTTTTCACCCTTCATTTTACCTACCAGTAAGCCTTTTTCACGTCAGCAGCAACTCTTTCGCAGCGGACAGGACCGTTTCATGTTCGGAGCAAGACCAGCCTCCCACTTGGACCCAATACCGGCCTCCCGCACTCTTCTGGCGGGCTCAGAAGCAGCAGTTCCCGGTGAGAAGAGAGGACCAGGCGCAGCTCAGTCATTAGGATTTCCTCCAGGATTTgttggggaggggagggggttcGCAGTCTGTTTGTGGGGGAAGGCATTTGCTGGGATGTTTGAGTCGCGTTGTTTGGTGGGGTGAAGGGACCGAGAGAGTGGCCGGAGAGACCAAAGGGACGGAGGCCGAGAGAGGAGCCGAGAGCATGGCTCTGGTAGTGCTGTCTCTCTGGGTGCTAACGAGTCTCACCTGGGCGGACGTGGTCCCGGTGTCAGCCAACAGGCATTCCGTTTACTGGAACAGCTCCAACATACATCTGCGTAGGGAGGGCTACACAATGCAGGTGAACGTCAACGACTACCTGGACATCTACTGCCCTCATTACAATGACAGCCAGCGCATGGTGGGCACCGGCGAGCAGTACGTCCTCTACATGGTCAGTTACCGCGGTTACAGGAACTGCGACCCCCAGCTGGGCTTCAAGAGGTGGGAGTGTAACCGACCCCACGCCCCCCACGCGCCCATCAAGTTCTCTGAGAAGTTCCAGCGCTACAGCGCCTTCTCGCTGGGCTACGAGTTCCACGTTGGACAGGAGTACTACTACATCTcCACGCCCACCCACCATCACGGCCGCAGCTGTCTGAGACTACGAGTATACGTCTGCTGCTCCACGGcctctGACGTGGATGATGACCCAGAGCCTACAGAACCAGACTACACGCTTAGACCAGGCCTAAAAATTGACGATATTGATGAATTTAACCCTTTTGTTCCCAAGCTGGAGAAGAGCGTTAGCGGAAGCAGCCCAACCAGGGATCGCCTTCTCCTCACCGTGACGATGCTCCTTCTGGCCGCTCTCTTCATCTCCTAGCAACGGCCATCCCATCAGCGTCACCATGCCAACTAGCCTTGGGAGGGCGTACAGTATCAGTGGGTGGGAGAG

Function

symbol description
efna3 Enables ephrin receptor binding activity. Involved in ephrin receptor signaling pathway; negative regulation of angiogenesis; and positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process. Predicted to be intrinsic component of plasma membrane. Predicted to be active in plasma membrane.

NR:

description
ephrin-A3-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804782.1 False 1460 mRNA 0.54 6 21975192 22033267
XM_039804783.1 True 1555 mRNA 0.54 6 21975192 22033267

Neighbor

gene id symbol gene type direction distance location
flad1 flad1,LOC102778463 coding upstream 74540 21890529 ~ 21900652 (+)
chrnb2 chrnb2,LOC102780733,LOC104959165 coding upstream 139841 21818053 ~ 21835351 (+)
she LOC101483326,LOC102307252,LOC102202678 coding upstream 156970 21805074 ~ 21818222 (+)
c7h1orf43 LOC104934460,LOC104959162,LOC103388199 coding upstream 207339 21764475 ~ 21767853 (+)
znf687a NA coding upstream 296334 21668490 ~ 21678858 (+)
efna1b efna1,LOC104918192 coding downstream 35739 22069006 ~ 22080302 (+)
LOC120562069 tmem107 coding downstream 74676 22107943 ~ 22110135 (+)
krtcap2 krtcap2 coding downstream 77249 22110516 ~ 22113062 (+)
s100a10b LOC104962190 coding downstream 80852 22114119 ~ 22115560 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding downstream 88437 22121704 ~ 22124437 (+)
LOC120562851 NA non-coding upstream 249487 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 682812 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 684878 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 685817 21289171 ~ 21289375 (+)
G74274 kiaa1429,LOC104941925 non-coding upstream 731625 21243229 ~ 21243567 (+)
G74673 NA non-coding downstream 3011 22036278 ~ 22036659 (+)
G74729 NA non-coding downstream 82349 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 86471 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 96385 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 150516 22183783 ~ 22184037 (+)
G74633 tuft1,LOC102781808 other upstream 204906 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 371734 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 559298 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 638527 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 963778 21008013 ~ 21011414 (+)
slc50a1 slc50a1 other downstream 50402 22083669 ~ 22091963 (+)
LOC120561539 NA other downstream 99311 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 104280 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 106513 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 164445 22197712 ~ 22248527 (+)

Expression


Co-expression Network