pbx2 (LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063)


Basic Information

Item Value
gene id pbx2
gene name LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30125926 ~ 30133536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804794.1
ATTTTCCTGTCAATCGCTAGGGGACCCAGCTTTGTGCGATGCCTCGTATCAgcctgtgttgttttgtgtctgtgagCACAGTTGGGCAGCAGTCGTCGCCACTGTGCGTCGCTGAAgatgttgcagcagcagcctctgACTGGCAACGGGCCCTCCAACGGCCGGGGACTCGGCATGAGTGGTCATCCCGGGATGCATGCGCTTAACTCGGTTCATCATCCTTCCCAGCGTCGGTCTGACGGAGGGGACTCGGGCCTCGAGGGCACAGAAAACGGACATGAAAACCGCAGAGATATTGGTGACATACTGCAGCAAATAATGACCATCACCGACCAAAGTCTGGACGAGGCACAAGCAAAGAAACATGCACTCAACTGCCACCGAATGAAACCTGCATTATTCAGCGTCCTTTGCGAGATCAAGGAAAAAACTGGCCTGTCAATGAGAAACGCCCAGGAGGACGAGCCTCAGGACCCTCAGCTGGTGCGATTGGACAACATGCTGCTGGCAGAGGGTGTGGCGGGGCCGGAAAAGGGTGGCGGGGCTGCTGCCGCTGTATCTGCTGCCACCAGCTCGGGAGGGATGTCACCTGACAGCTCGCTCGAGCACTCCGACTACAAAAGCAAGTTGAGCCAGATTCGCAGTATCTACCACACTGAGCTGGAGAAGTATGAGCAGGCATGCACCGAGTTCACCACCCATGTGATGAACCTGCTGAGGGAGCAGTCGCGTACACGGCCCGTGACTCCGCGGGAGATTGAGCGCATGGTCGGCATCATCCACCGCAAGTTCAGCACGATCCAGACCCAGCTGAAGCAGAGCACATGTGAGGCAGTCATGATCTTGAGGTCCCGCTTTCTTGATGCCAGGCGCAAAAGACGCAACTTCAGCAAACAGGCCACAGAGGGCCTGAATGAGTATTTCTACTCCCACCTGTCCAACCCTTACCCCAGTGAAGAAGCCAAAGAGGAACTGGCCAAACAGTGTGGAATCACCGTCTCTCAGGTCTCTAACTGGTTTGGCAACAAGAGAATCCGCTACAAGAAAAACATTGGCAAGTTCCAAGAAGAGGCCAACCTTTATGCCATGAAGACAGCCTTAGGGGGCCCACAGGGCAACGACTCCCCGCACACTCCCAACTCCACAGgATCTGGGTCCTTCTCTCTGTCCGGGTCAGCTGACCTGTTCCTCGGGGTTCCACCTGTGAACGGCGAGCAGTCTGCTTACCAAATGGGAGTGCAGGCTAACGGGAACTGGCATGGTCGAAACTCGCCCCCGTCCGGCGCCTCGCCCCACAGCGACCACTCGGAAAACTCTGACTGATGGCCCTGCCCACTGGCACAGAACGACAGCGACGGAAAGATTGAtggaaaagacagacagaatgaTATCACACTTCCCACGTGGCTGCAGTTGCTTTTGTATGTGGTttgattattttaaatgtacattgtatttttgttttcttactgctcaGCGCGGATCATTATTATGTTTGATTGATTAGCTGAGTGcacggatgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgcatgcacgtgTGGTTTTATTATCCTGGTTGTAGGGTTTGTTTTCCACTACTTTTGACATGTTACTGAGGTGTGCGTTTGTGGTTGGGAATGGGAGGGTGGGGACAGCATTATCATTGATTTTAGCACACTAtatcattattaatattattgctGTTTTATTATTAGTGCTACaactattttaattttaacagcTCAGAAAGAGGATGCATTTAGTGAATGAGAGAACAATAGAGAAATATCCAAAGATTTTGTGCGTTTGTTTCTctgttttgttagtttttttgttttctaccGGGCTCATGTGTCCCTGTAAAATGAATGAGGCGTGTGTGTGAGTCCTTATCAATGGTTTGAATGAGTATCAAcagtgctgtcttttttttctgtacagTGAAACACCTGTATTCTCTCTACCTCTTTTACAATAAAGACTCTCTGTATTCACAACTGA

Function

NR:

description
PREDICTED: pre-B-cell leukemia transcription factor 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804794.1 True 2067 mRNA 0.50 8 30125926 30133536

Neighbor

gene id symbol gene type direction distance location
ntrk1 NA coding upstream 314137 29780179 ~ 29811789 (+)
LOC120562942 NA coding upstream 380745 29743009 ~ 29745181 (+)
LOC120562990 NA coding upstream 764801 29355633 ~ 29361125 (+)
LOC120562792 NA coding upstream 770384 29352141 ~ 29355542 (+)
LOC120562836 NA coding upstream 777103 29339254 ~ 29348823 (+)
LOC120561633 NA coding downstream 2745 30136281 ~ 30137569 (+)
tap1 tap1 coding downstream 36478 30170014 ~ 30182142 (+)
brd2b LOC104928643,LOC103356858 coding downstream 52810 30186346 ~ 30205056 (+)
LOC120562234 NA coding downstream 71641 30205177 ~ 30212236 (+)
LOC120562442 NA coding downstream 79103 30212639 ~ 30216695 (+)
LOC120562092 NA non-coding upstream 4830 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 227173 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 312385 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 540926 29582757 ~ 29585000 (+)
G77097 NA non-coding upstream 660374 29464612 ~ 29465552 (+)
LOC120562235 NA non-coding downstream 83212 30216748 ~ 30218603 (+)
G77260 NA non-coding downstream 264740 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 843205 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 844791 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 881597 31015133 ~ 31016447 (+)
G77239 NA other upstream 1288 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 16381 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 713513 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 735873 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 795668 29328789 ~ 29330258 (+)
LOC120562443 NA other downstream 217959 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 553802 30687338 ~ 30731609 (+)
G77447 NA other downstream 1001293 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1842782 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 2271597 32405133 ~ 32421472 (+)

Expression


Co-expression Network