tap1 (tap1)


Basic Information

Item Value
gene id tap1
gene name tap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30170014 ~ 30182142 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804802.1
TTTCGGTTTCAGTTTGACAGCTGCAAGTTCAGTCGGTCGACGTTTGAACAAGCAGCCGGTTGATAACTTGTTAAATTGtcaattttgtttatttagggTAAATATCGGTGTCGGTTTACGTTCTCAGACGATTAGCAAACTGCTACATATCAAACTTGGCTTGTCGAAAGGAAATAACCTGTGCATTATGCAAAAAATGAGCTACTTCTTCCCTCTGCTCTTCATGTgcctggatgtgtgtgtggtgcactCCATCCGCTTGGCCCAGCtctcacctctcctcctctcccatcCGTTCATCACCCTGTGGGGAGGAGGGTTGACCAGGGCTTGCCTCCTCGCCCTTCTCACCCTCACCTCCCCTGGGAGCCTGCCTTGGATGAGCAGTTTTGAGGGGCTACAGAGTTTAGGGGTCCTTTGCTTCCACTTCCCGGTGTACACCACTCTTCTCTGGGCGCTGGGCCAGTCCACCATGGAGGAACTGTGGGGGTGGCACTCCTGGGAAAGGGTGTTGCAGGGTTATGTTGTGACAGTAGTGGCGTGGCTCTACTGGAGTCGATATGTGTCATCTCTTTTGCTCTCCTGTGGTCGATACATCTCATCTCTGTTGACGATGGCACCCTCTGAGGAGCCCAAAGAAGACACCATTACACCTCTGAAGAGGCTGATGGAATACATGCGGCCCTATTTCTGGCGCTTCGTTTTTGTGCTGTTGCTCGTGTTTCTCTCTTCTTGTGGTGAGATGGCTGTTCCTCATTACACTGGTCGTGTGGCTGACTGGATCATAAATGAAGAAGCACCTGATGCATTCACAGAGGCAATCACAATCATGACGCTAATGACTATTGGCAGTGCTGTGCTTGAGTTTGTATGTGACCTCATGTACAACGTCACCATGAGCCTGATACACACCTCAGTGCAGGCAGCCGTCTTCCAGGCCGTGCTGAAACAAGAGATTGCTTTCTTCAAGGCCACAGGTGAACTGGTGTCCCGCGTTACCACGGATACTAATGAAATGAGCGAGGCACTGAGTGAGAAACTAAGTCTTGTGATGTGGTACACAGCGCGTTTTGCCTTCCTCATGTTCTTCATGGTGAGCCAGTCATGGAAAATGTCCCTGCTCACTTGCATGGGACTGCCCATTATTTGGGTCATACCCAAGCTCACTGGACACTTCCACCAGAGTATTGCTGTAAAAGTTCAGGAGTCACTGGCTAAGGCCAACCAGGTGGCCACAGAGACCTTCTCCTGCATAAGGACAGTGAGGAGTTTTGCCAACGAGGATGGTGAGACAGAGCGGTACAAACAGCGGCTAGACGATACTTACGCACTTAACAAAAAGGAAGCAGCAGCCTATGCAGCCTCTACCTGGGCTAACAGCATGACCACCCTGGCCCTGAAGGTGTGTATTCTGTACTATGGAGGGACTCTTGTGACCAGAGGGGACGTTAGCAGCGGAGACCTGGTGTCCTTTGTCCTCTATGAGTTGCAGTTTGCCTCTGCTGTTGAGGCTGTCATGCGTTATTACCCAGAGGTGAGGAAGGCAATTGGTGCCTCTGAGACGATCTTTGAAATATTGGATCGCAAACCTGAAAGACCACCAAATGGCACTTTGGCCCCTAAAAATCTTAAGGGTCACATTCAGTttaaaaatgttacattttcctATCCTAATGAGAGCAATCAAGTGCTCAAGGACGTGTCTCTGGAGATGAAGCCAGGCCAAGTCACTGCCCTTGTGGGGCTTAACACATCAGGGAAGTCCACCTGTGTGAAGCTGCTGGAGCGATTTTACCAGCCCCAAGCAGGGGAAATTCTACTGGATGGGAAAGATCTGCAAAGCTACGAAGACCAGTACCTACATGACAAGattgcTGTGGTGAGCCAAAATTGTCTGCTGTTTGCTCGCTCTGTGCGGGAGAACATCAAGTATGGCTACGGGAATGCTTCTGATGAGGAGATGGAAATGGCTGCCAAGCAAGCTAGTGCCCACGACTTCATCACGAAGCTGTCAAGTGGATACGACACAGATGCTGGGGAGAAGGGAGGCCAGGTGTCCGGAGGCCAGAAGCAGCGTATTGCCATTGCCAGAGCTTTAATCAGACGTCCTAAAATCCTGATACTGGACAACGCCACCAGTGACTTGGACACAGAGAATGAATATCAGGTCCACAAAGCTTTGTTAAACCAAACCAACAACTTCACTATGCTGTTGATATCCAACAAGATGAGTGTTGTAGAGAAGGCCGATCATATCATTGTCCTCAACGGTGGGATGGTAGAGGAGGAGGGCAGTCATGCGGAGCTGTTGAAGAAAGGCGGTCTTTATGCTGAACTGGTGAGAAAGCAGAACATGGGCTTTCACCGTCAAGAAGAGGAGGGGAATGATACACACTGAAATGTGCGGGCGGAGGTTGCCCTCAAGTCAGAGAAGCAGTCCAGTTACTGGAAGGTTGCTTGTTAAAAGTCCAGACTTAAAGGGTCACAACTCCAGTTATACTTGTACTATAAATAACAACTTCATTATTAGACCACACTTCATACTACAAGTCTTGCTAGAGTTTTTGCCTGTTAAGAATATTTCCCATTTTCATGCACCTTTGACATACCGTAAGTGAAGTTGTACTTGAAATGTCCTACTCTTGTTCCAGTACATTGAAATTTGCATTGTTATATTAAGGTATATCATGACATAGGTATTTTTCTggaaaatgaccatatttgacAATGACATCTAAAGGTATTTTCTCACATTGATGCAACAATCATCAAAAATCAAGTCCCAATGTTTGCAACATTGCCCACAATGGTCTAATAGAACCAGGGAGCCAGTATTGAAGGGAAAGCTTCCATTGTATAAATGATATGGCAAAATCTCAGttaaaacatttgaataatCCAATTGTACTCATATCGCCCAACCATATTGTGTGAATGGGAATCACTATGAAGAGAGTTTATAAGGATCACATGCTATTGCTTCATGCTTTGCAAATATAGATGTAGAAAGAGATCAGATAGATTATAGGTGTTTCGTACTGTAATATTTAAGTGGAATGTTTCTAAATGATTaggttgtatatatttttttacatttgtctttgttttatttgtactaTATTTTCCCTGTATTGAGGATTCTTTACTTAGgtaatttttttcaacctgttcGTACTCTGTTTCCCTCCCCAGAGTTGTGCGGCAATAAATCGTTTGAATTAA

Function

symbol description
tap1 Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member).

NR:

description
antigen peptide transporter 1-like

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05653 ABCB2, TAP1; ATP-binding cassette, subfamily B (MDR/TAP), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804802.1 True 3222 mRNA 0.46 13 30170014 30182142

Neighbor

gene id symbol gene type direction distance location
LOC120561633 NA coding upstream 32445 30136281 ~ 30137569 (+)
pbx2 LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063 coding upstream 36478 30125926 ~ 30133536 (+)
ntrk1 NA coding upstream 358225 29780179 ~ 29811789 (+)
LOC120562942 NA coding upstream 424833 29743009 ~ 29745181 (+)
LOC120562990 NA coding upstream 808889 29355633 ~ 29361125 (+)
brd2b LOC104928643,LOC103356858 coding downstream 4204 30186346 ~ 30205056 (+)
LOC120562234 NA coding downstream 23035 30205177 ~ 30212236 (+)
LOC120562442 NA coding downstream 30497 30212639 ~ 30216695 (+)
LOC120561719 vmo1 coding downstream 36855 30218997 ~ 30223524 (+)
LOC120562225 LOC103356864 coding downstream 180565 30362707 ~ 30390432 (+)
LOC120562092 NA non-coding upstream 48918 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 271261 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 356473 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 585014 29582757 ~ 29585000 (+)
G77097 NA non-coding upstream 704462 29464612 ~ 29465552 (+)
LOC120562235 NA non-coding downstream 34606 30216748 ~ 30218603 (+)
G77260 NA non-coding downstream 216134 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 794599 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 796185 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 832991 31015133 ~ 31016447 (+)
G77239 NA other upstream 45376 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 60469 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 757601 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 779961 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 839756 29328789 ~ 29330258 (+)
LOC120562443 NA other downstream 169353 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 505196 30687338 ~ 30731609 (+)
G77447 NA other downstream 952687 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1794176 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 2222991 32405133 ~ 32421472 (+)

Expression


Co-expression Network