bckdhb (bckdhb)


Basic Information

Item Value
gene id bckdhb
gene name bckdhb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 3690413 ~ 3781647 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804814.1
CGTTGCCCTTCCTGTTCAGTCATAACAACAGTGATGGCGGCCGCAGCACGGTTCTTCATCCGAGGTGCACCCTTGAAACTTCCCGTCTCCGGTGTTGGCACCGGGGCTCAGAGCTCTTTTGAGGCAACTCTGCTGAAATTGTCACCGAACTCCAACTCCCGTACAACAACACAACGAAGACATGCAGCTCACTTTACCTTCCAGCCTGACGCCGTACCGACACAATATGGTCCCACCCAGAAGATGAACTTGTTCCAGTCAGTTACAAGTGCCTTGGACAACACTCTCGCCAGTGATCCAACAGCAGTCATCTTTGGGGAAGATGTTGCCTTTGGTGGAGTTTTCCGATGCACAGTGGGTCTCAGAGACAAATATGGTAAGGACAGAGTCTTCAACACTCCCCTTTGTGAGCAGGGGATTGTTGGATTTGGTATTGGTGCAGCTGTTGCTGGTGCCACAGCCATCGCTGAGATCCAGTTTGCTGACTACATCTATCCTGCTTTTGACCAGATAGTCAATGAAGCAGCCAAGTACCGCTACCGTTCTGGCAACTTGTTTGACTGCGGCAACCTCACCATTCGGGCTCCGTGGGGGTGTGTCGGCCACGGGTCACTTTACCACTCTCAAAGCCCTGAAGCCTTCTTCGCCCACTGCCCTGGCATCAAGGTTGTAATACCCCGTAGTCCAGTGCAGGCCAAAGGGCTGCTCCTCGCCTGCATCGCTGACCAGAACCCCTGCATATTCTTTGAGCCCAAGATCCTGTACAGAGCCGCAGTGGAGCAGGTTCCTGTGGAACCCTACACCATCCCACTCTCACAGGCCGAGATCCTACAGgaaggaagtgatgtcactctGGTTGCCTGGGGGACACAGATCCATGTGATGAGGGAGGTGGCCAATATGGCTCAAGAGAAACTGGGAGTGTCCTGCGAGCTCATCGATCTACAGACCATCCTGCCCTGGGACACTGAAACTGTTTGTAAGtcagTGGTGAAAACTGGACGTTTGCTCATCAGTCATGAGGCACCAATAACCGGAGGCTTTGCTGCTGAAATCAGCTCAACAGTACAGGAGGAGTGCTTCCTTAACCTGGAGGCTCCCATCAGTAGGGTCTGTGGTTATGACACCCCCTTCCCCCACATCTTTGAACCCTTCTACATCCCAGACAAGTGGAAGTGCTTTGAGGCAATTAAGAAGATGATCAACTACTGAACCCCTGTCAGGGGCCAACTTCTGGTAGCCCTGGGCTCCATCacctctccttttcctcttcatTCATCCAATCAGTGGAGAGGggccaggaaaagacactttgTTAATCATCCAATCAGGAAACGGTATCCAGATAGGCTCCATGTCCCCCTGTGTCTTCCAGCTAAAAGACTGTTACAGCTCCTCTGCATAGGGAACATCATTCTGTTgcaaggggaaaaaaattatttgaccCACTTCATTTGGTGAAACTCTGCTTTCAACATAATGCACATCATTTGATTTTCTCTTAAACAAGAGTTGGATACTGTGGGGGAAACTGTATTTGATTGAATTTGTgactgtctgcctctctgtgcTGTTACCTTTGGTTGAATGTGTCCAGCTCTGCTCTAATCTTTATTTAGTTTGACATTAATTGAACCCTATTGTACTAATGTAGTGGATCTGTGGTTTTTAATGAAATAAAGTATTAAGTATTGGTGAAAACA
>XM_039804815.1
CACGTTGCCCTTCCTGTTCAGTCATAACAACAGTGATGGCGGCCGCAGCACGGTTCTTCATCCGAGGTGCACCCTTGAAACTTCCCGTCTCCGGTGTTGGCACCGGGGCTCAGAGCTCTTTTGAGGCAACTCTGCTGAAATTGTCACCGAACTCCAACTCCCGTACAACAACACAACGAAGACATGCAGCTCACTTTACCTTCCAGCCTGACGCCGTACCGACACAATATGGTCCCACCCAGAAGATGAACTTGTTCCAGTCAGTTACAAGTGCCTTGGACAACACTCTCGCCAGTGATCCAACAGCAGTCATCTTTGGGGAAGATGTTGCCTTTGGTGGAGTTTTCCGATGCACAGTGGGTCTCAGAGACAAATATGGTAAGGACAGAGTCTTCAACACTCCCCTTTGTGAGCAGGGGATTGTTGGATTTGGTATTGGTGCAGCTGTTGCTGGTGCCACAGCCATCGCTGAGATCCAGTTTGCTGACTACATCTATCCTGCTTTTGACCAGATAGTCAATGAAGCAGCCAAGTACCGCTACCGTTCTGGCAACTTGTTTGACTGCGGCAACCTCACCATTCGGGCTCCGTGGGGGTGTGTCGGCCACGGGTCACTTTACCACTCTCAAAGCCCTGAAGCCTTCTTCGCCCACTGCCCTGGCATCAAGGTTGTAATACCCCGTAGTCCAGTGCAGGCCAAAGGGCTGCTCCTCGCCTGCATCGCTGACCAGAACCCCTGCATATTCTTTGAGCCCAAGATCCTGTACAGAGCCGCAGTGGAGCAGGTTCCTGTGGAACCCTACACCATCCCACTCTCACAGGCCGAGATCCTACAGgaaggaagtgatgtcactctGGTTGCCTGGGGGACACAGATCCATGTGATGAGGGAGGTGGCCAATATGGCTCAAGAGAAACTGGGAGTGTCCTGCGAGCTCATCGATCTACAGACCATCCTGCCCTGGGACACTGAAACTGTTTGTAAGaacgaggcaacagctgagggagagcgcGTGTCCTCCGTCCCCCCGTGATGGACCACCACcccgaccctgtctcctgacagcacaggggctggaaaaacaagccgaaataactcggtcaatggcagaaataaatcgttCACTTGTGGCCATTAACGACACTGTAAAAGAGAAACGAAAACCTgaagactaaataaaaaatgttgtgcatca

Function

symbol description
bckdhb Predicted to enable catalytic activity. Predicted to be involved in branched-chain amino acid catabolic process and response to nutrient. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHB (branched chain keto acid dehydrogenase E1 subunit beta).

NR:

description
PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804814.1 True 1703 mRNA 0.49 11 3690413 3781645
XM_039804815.1 False 1196 mRNA 0.53 9 3737668 3781647

Neighbor

gene id symbol gene type direction distance location
tpbgb NA coding downstream 249292 3438932 ~ 3441121 (-)
dop1a dopey1 coding downstream 356561 3270765 ~ 3333852 (-)
snap91a snap91 coding downstream 422312 3172978 ~ 3268101 (-)
me1 me1,LOC102784256 coding downstream 569298 2942726 ~ 3121115 (-)
pnisr pnisr coding downstream 968623 2713443 ~ 2721790 (-)
ttk LOC105419921 coding upstream 6869 3788516 ~ 3850585 (-)
sybu sybu coding upstream 92780 3874427 ~ 3906370 (-)
id4 LOC103388899,LOC101483990 coding upstream 425884 4207531 ~ 4211444 (-)
ptpn2a ptpn2,LOC104936248 coding upstream 664135 4445782 ~ 4462631 (-)
LOC120562255 NA coding upstream 829738 4611385 ~ 4612551 (-)
G70408 NA non-coding downstream 59076 3630679 ~ 3631337 (-)
G70404 NA non-coding downstream 73146 3617062 ~ 3617267 (-)
G70397 NA non-coding downstream 117325 3572856 ~ 3573088 (-)
G70368 NA non-coding downstream 214892 3473896 ~ 3475521 (-)
G70364 NA non-coding downstream 226936 3462653 ~ 3463477 (-)
G70470 NA non-coding upstream 27784 3809431 ~ 3819286 (-)
G70480 NA non-coding upstream 144714 3926361 ~ 3926625 (-)
G70491 NA non-coding upstream 245958 4027605 ~ 4027865 (-)
G70509 NA non-coding upstream 359995 4141642 ~ 4141870 (-)
G70515 NA non-coding upstream 373146 4154793 ~ 4155111 (-)
G70407 NA other downstream 60595 3629133 ~ 3629818 (-)
usp45 usp45 other downstream 872386 2727168 ~ 2818027 (-)
zfpm2a zfpm2 other downstream 1829247 1725158 ~ 1861166 (-)
osr2 osr2 other downstream 2957657 728485 ~ 732756 (-)
LOC120563202 NA other upstream 197664 3979311 ~ 3979414 (-)
eny2 eny2,LOC100692744 other upstream 290677 4072324 ~ 4077811 (-)
cep76 cep76 other upstream 580348 4361995 ~ 4445053 (-)
LOC120562328 NA other upstream 644659 4426306 ~ 4434969 (-)
LOC120562332 NA other upstream 1325165 5106812 ~ 5156330 (-)

Expression


Co-expression Network