LOC120561673 (LOC108235490,LOC102233864,LOC107379681)


Basic Information

Item Value
gene id LOC120561673
gene name LOC108235490,LOC102233864,LOC107379681
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25368329 ~ 25371056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804857.1
TAAATATGAGCCAGGGTGTGTCCAGGTGTCTTCTGATCATTCACTTGACACCATGACACTGCTGGCTCTGCTGCTGATGATCGGAGCTGCTGcggCAGTTCCCCAGGAAGATGGCAGGATCATTGGTGGACAGGAGTGTGAGCCTCACTCTCGTCCATTCATGGCCTCCCTCAACTATGGTTACCACTTCTGTGGTGGGGTGCTCATCAACAATCAGTGGGTGCTCTCCGTTGCCCACTGTTGGTACAATCCCTATGCCATGCAGATCATGCTGGGAGAACACGATGTGCGAGTGTTTGAAGGTACAGAGCAGCTCATGAAAACTGACAACATCATCTGGCACCCTAGTTATGACTATCAGACTCTGGATTTTGACATCATGCTGATCAAGCTCTACCACCCAGTGGAGGTGACCGAGGCAGTCGCACCCATCCCCTTACCCACAGCGTGCCCCATGGCGGGGCTTCCCTGCTCTGTGTCTGGCTGGGGTAACACTGCCATGAATGGCGAGGTGAACTTGCCCGTCCGTCTGCAGTGTTTGGACGTGCCCATACTGGACCACCAGGACTGTGAGAATGCCTATCCTGGCATGATCTCACCCAGGATGGTGTGTGCTGGATACATGGATGGAGGCAGAGATGCATGCAATGGTGACTCCGGCAGCCCTCTGGTTTGTGCTGGGGAGGTCCAGGGCCTGGTGTCATGGGGTCAGGGATGTGCACTGCCTAACTACCCCGGAGTCTACGTCAAATTGTGTGAGTTCCTCTCCTGGATTGAAGACACCATGGCAGCCAACCCCTGAAGAAATTTAATTTTCTTCACTTCTCCCAATGGTTCCCCTCAATCCTATTTTCTTTTACAGCcctgacttttctttttctttctatctCTGGTGCCTTGTCTCTTGCTTTGAAGTTTCCTCCCTTCATATATCCACactaaataaaaacacttgGTAGATA

Function

NR:

description
PREDICTED: trypsin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804857.1 True 962 mRNA 0.52 6 25368329 25371056

Neighbor

gene id symbol gene type direction distance location
LOC120561675 trypsase,LOC103389000 coding upstream 6016 25360758 ~ 25362313 (+)
LOC120561668 LOC105939654 coding upstream 10470 25348120 ~ 25357859 (+)
tmem145 tmem145 coding upstream 23637 25294256 ~ 25344692 (+)
lipeb lipe coding upstream 75059 25262018 ~ 25293270 (+)
cd79a NA coding upstream 106426 25258791 ~ 25261903 (+)
bcl3 bcl3 coding downstream 29184 25400240 ~ 25422572 (+)
ddx61 LOC104962676,LOC102800138,LOC100698984,LOC101488107,LOC104927343 coding downstream 51794 25422850 ~ 25436271 (+)
tomm40 tomm40,LOC106917673,LOC103139243,LOC107083531 coding downstream 65782 25436838 ~ 25443829 (+)
LOC120562741 NA coding downstream 108205 25479261 ~ 25480707 (+)
apoeb NA coding downstream 114503 25485559 ~ 25487892 (+)
G75977 NA non-coding upstream 21113 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 32371 25335016 ~ 25335958 (+)
G75943 NA non-coding upstream 223525 25144579 ~ 25144804 (+)
G75942 NA non-coding upstream 224055 25144058 ~ 25144274 (+)
G75941 NA non-coding upstream 252572 25115556 ~ 25115757 (+)
G76055 NA non-coding downstream 171343 25542399 ~ 25596454 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding downstream 235094 25606150 ~ 25617478 (+)
G76089 NA non-coding downstream 253374 25624430 ~ 25701085 (+)
G76109 NA non-coding downstream 431456 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 450557 25821613 ~ 25822239 (+)
LOC120561858 NA other upstream 372020 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 482956 24806289 ~ 24885373 (+)
dedd1 dedd2 other upstream 834053 24520735 ~ 24534276 (+)
G75644 NA other upstream 931510 24435139 ~ 24436819 (+)
lpcat3 lpcat3 other upstream 1294631 24056437 ~ 24073698 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 3151 25374207 ~ 25380798 (+)
apoc1 NA other downstream 120728 25491784 ~ 25493262 (+)
apoc2 NA other downstream 131544 25502600 ~ 25504052 (+)
taf12 taf12 other downstream 421762 25792818 ~ 25795519 (+)
G76192 NA other downstream 768845 26139901 ~ 26142627 (+)

Expression


Co-expression Network