onecutl (LOC106524064,LOC104923936,LOC108243192)


Basic Information

Item Value
gene id onecutl
gene name LOC106524064,LOC104923936,LOC108243192
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33087190 ~ 33096138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804862.1
CTACATTTATTGGTTGAAGATTGAAGATGGATGGGAGTCTAGGGGAGATGTCCCTCCACAGCCACTCTGACCTGGCTCACAGTCAGGACCACGGCAGGGCCATGCTGCACTCGCGGGACCTCTCAGCTGCGTTCCCCAGGCCTTCCCTCGGGGGCCCCTCCATGTCTCTGGAGCCCGAGCCCCGTCCGTCCGGCTTCGACCACTCCATGTCGGCGCTGGGCTACAGCGGCGACTCCCCGTCCGGCGCGGGCAGCACCTACACCACCCTGACCCCCCTGCAGCCCTTTGACGACAAgttccaccaccaccaccaccatcaccacccctGCCTCCCCGTCAGCAACGTCATCGGCAGCTTCACCCTCATGCGCGAGGACCGAGGCCTCGGCACCAACTTCTACAACCCCTACGGCAAGGACCTGGCCATGTCCCAAAGCCTGTCCCCCCCCTCCGCCGGTTCGGGCCTGGCCTCCTCCATGCACGGCTACGGCAGCTTGGGCAACAGTCCCAACGGCAACGGCGGCCAAATGCTCCACGCCGGCTACGACGTCCACGGGGGCAGCCTCTTCTGCCGGACGTCCGATTTCGGCCGCGAGATGTCGCCGCCGGGCCTGGGGGGAGGCGACGTGTCAGTGGGGCATCAGCTGAACAAAATGGAGGCTCACCAGCACGCCCAAACCAGCCACCACGCTCACCTCTACAGCCAGCACTACCAGCCCCACCATCACCCGAACCAGCAGACCTCCAAGATGGGCGAGCACCTGCTCTCCTCTTCGTCCGGCTTGTCCTCGCCCGGCGAGGGCATGCTGGCGGGCTCGCAGGGCGGCGCCGGCGGCGGCAGCGGCGGGGAGGAGATCAACACCAGGGACGTGGCCCAGCGGATCATCACCGAGCTGAAGAAGTACAGCATCCCCCAGGCCATCTTCGCCGAGAGGGTCCTGTGTCGGTCACAGGGCACGCTGTCTGACCTCCTGAGGAACCCCAAGCCCTGGGGCAAGCTCAAGTCCGGCCGGGAGACCTTTAAGAGGATGTCCCGCTGGCTGCAGGAGCCTGAGTTTCAAAGAATGGCCTCGCTCCGGCTGGAGGCCTGCAAGCGGAAGGAGCAGGAGCAGAGCAAGCTGGAGCGCAACCAGGGCCCGAAGCGCACCAGGCTGGTGTTCACGGACCTGCAGCGGCGTACGCTCCTGGCCATCTTCAGGGAGAACCACCGCCCGACCAAAGACCTGCAGGTCACCATCTCCCAGCAGCTGGGCCTGGAGCTCTCCACGGTCAGCAACTTCTTCATGAACGCCCGCCGACGCAACGTCAACAAGTGGGCCGACGAGGGCCGTCCCTCCTCCACGGGCTCCTCGGGCTCCAGCGTTTCCTCCTCCGCAGTGTCCTGCAGCACGGCATGATGACGGTTGGGGAGGGAGC

Function

NR:

description
PREDICTED: hepatocyte nuclear factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804862.1 True 1416 mRNA 0.66 2 33087190 33096138

Neighbor

gene id symbol gene type direction distance location
hormad1 NA coding upstream 38053 33032239 ~ 33049137 (+)
LOC120562446 NA coding upstream 136480 32947311 ~ 32950710 (+)
scnm1 LOC104949611 coding upstream 175998 32905361 ~ 32911192 (+)
tnfaip8l2b tnfaip8l2 coding upstream 186861 32892531 ~ 32900329 (+)
LOC120562193 LOC103388706 coding upstream 198840 32853357 ~ 32888350 (+)
lingo4b LOC104947071,LOC108243198 coding downstream 79771 33175909 ~ 33200642 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding downstream 110569 33206707 ~ 33260917 (+)
tlr18 LOC103362575 coding downstream 167592 33263730 ~ 33278517 (+)
s100a1 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC108272706,LOC108441918 coding downstream 186909 33283047 ~ 33286346 (+)
prdm1a prdm1,LOC103362578,LOC100706221 coding downstream 377034 33473172 ~ 33489674 (+)
G77897 NA non-coding upstream 34331 33051480 ~ 33052859 (+)
G77887 LOC103369030 non-coding upstream 36690 33017521 ~ 33050500 (+)
G77890 NA non-coding upstream 57399 33022098 ~ 33029791 (+)
G77883 NA non-coding upstream 107289 32928334 ~ 32979901 (+)
LOC120563080 NA non-coding upstream 134487 32951977 ~ 32952703 (+)
G77895 NA non-coding downstream 1490 33097628 ~ 33099548 (+)
G77899 NA non-coding downstream 5765 33101903 ~ 33105633 (+)
G77900 NA non-coding downstream 10071 33106209 ~ 33106571 (+)
G77903 NA non-coding downstream 15288 33111426 ~ 33112065 (+)
G77894 LOC103369035,LOC103362570 non-coding downstream 19137 33115275 ~ 33130873 (+)
LOC120561717 NA other upstream 665718 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1107281 31976318 ~ 31979909 (+)
G77447 NA other upstream 1951044 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2355581 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 2726602 30351495 ~ 30360588 (+)
G77888 NA other downstream 4275 33100413 ~ 33101534 (+)
bmper bmper other downstream 729949 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 798222 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 894404 33990542 ~ 34042648 (+)
G78200 NA other downstream 1433217 34529355 ~ 34544379 (+)

Expression


Co-expression Network