popdc3 (popdc3)


Basic Information

Item Value
gene id popdc3
gene name popdc3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 9115711 ~ 9123087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804863.1
TAACTAACAGTACCATAGTCAACCAGGTGTTCGATGACATGTTGCCTTTGAGTTAACGTCACCCTGTATTTGCAGTATTTTTCGGCGCTCTCCATAGTCTCTGAGAGACCCTGGACGACTTTGTGTGAAATGTGCTGCTAGTTTTATTCACTTTTGTAACGTTAGACAATGGAGCCTCCGGATTTCGAAGCCATGAACTTCACGGCGGAACCAGTGGCGGCGGCGCACCCGATATGTGAGGAATGGAGAGGCACCCCGGAGGGCTCCGTGTTCCACCTCGCCAATATCTTCCTTTTCCTCGGCTTCATGGGCGGCAGCGGCTTATATGGACTCCTCTACCTGTTCACCTTTCTGACTATGGGCTTCTTCTGCTCCACCGTTTGGGCATGGTCGGACTCCTGCACAACGGACTCTTTCCTGTGGAGTTTCGCACTCTTCGGGGTGTGTTTGGGACAAGTCCTGCACGTTTCCTACCGTCTGAGAAGCGTCTCCTTCGATAATGAATTCCAGGAGATTTACAActgcatgtttaaaaaactGGGAGTGTCGCTCGGCCTTTTTGGGAAGATAGTGGCGTGCTGTGACGGAGACGTCCAGACCATAGAGAGGGACCACTGCTTCGCCGTAGAGGGAAAAACCGCTATTGACAAGCTGTCGGTGCTCCTGTCTGGCAGAATCCGTGTGACAGTTAATGGAGAGTTTCTGCACTACATCTACCCTTTCCAGTTTCTGGATTCACCTGAGTGGGACTCTCTCAGACCATCAGAGGAGGGTGTATTCCAgGTGACACTGCACGCCGATGACCCCTGTCGATACGTGGcgtggaggaggaagaaactCTATCTGCTTTTCGCCAAGCATCGCTACATAGCTAAGATCTTTGCCCTGGTGGTGCGCAACGACATCGCAGAGAAGCTGTACTCCCTCAACGACAAGGCTTACGACGAGTCCGGCCACCGCTTTGATCTCCGCTTACCGAGTTACATACCAGGGACCGAATTAGAAAAGGCAGATGTCTTCCTGCAAGTGCCGGTACAGGGGGCAAAGACTGCctgaacgaacacacacacgcacacaaacacacacacacacacacacacacacacacacacacacacacaccagctccAAGCCATAAACATGAAAGGCCCTAGCTTGCATCTTGCATTTAAGTGTCAATTCAAAAACCggtacaatgttt

Function

symbol description
popdc3 Predicted to enable cAMP binding activity. Predicted to be involved in several processes, including heart development; skeletal muscle tissue development; and striated muscle cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy. Orthologous to human POPDC3 (popeye domain containing 3).

NR:

description
PREDICTED: popeye domain-containing protein 3

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804863.1 True 1201 mRNA 0.51 3 9115711 9123087

Neighbor

gene id symbol gene type direction distance location
LOC120562991 LOC103388880 coding upstream 14209 9088184 ~ 9101502 (+)
LOC120562241 NA coding upstream 611259 8454764 ~ 8504452 (+)
pomgnt2 pomgnt2 coding upstream 731091 8364356 ~ 8384620 (+)
zgc:114181 LOC104932954,LOC102799802,LOC101469313 coding upstream 916850 8187287 ~ 8198861 (+)
rwdd1 rwdd1 coding upstream 994385 8114521 ~ 8121326 (+)
bves bves coding downstream 4763 9127850 ~ 9144754 (+)
hace1 hace1 coding downstream 24528 9147615 ~ 9190089 (+)
ascc3 ascc3 coding downstream 884188 10007275 ~ 10200405 (+)
sim1a sim1,LOC103355653,LOC103388874,LOC102313558 coding downstream 1092406 10215493 ~ 10241076 (+)
LOC120562586 LOC104935658,LOC103355652,LOC101471248 coding downstream 1205077 10328164 ~ 10357777 (+)
G71475 NA non-coding upstream 346647 8768688 ~ 8769064 (+)
G71476 NA non-coding upstream 349577 8765894 ~ 8766134 (+)
G71463 NA non-coding upstream 371921 8743528 ~ 8743790 (+)
LOC120561615 NA non-coding upstream 468002 8646964 ~ 8647709 (+)
G71429 NA non-coding upstream 495372 8594033 ~ 8620339 (+)
G71517 NA non-coding downstream 76 9123163 ~ 9125732 (+)
G71553 NA non-coding downstream 197365 9320452 ~ 9320696 (+)
G71554 NA non-coding downstream 200730 9323817 ~ 9324017 (+)
G71557 NA non-coding downstream 247917 9371004 ~ 9371948 (+)
G71562 NA non-coding downstream 332288 9455375 ~ 9455641 (+)
trnay-gua_42 NA other upstream 265991 8849632 ~ 8849720 (+)
trnay-gua_41 NA other upstream 266374 8849249 ~ 8849337 (+)
trnay-gua_40 NA other upstream 267140 8848483 ~ 8848571 (+)
trnay-gua_39 NA other upstream 268230 8847392 ~ 8847481 (+)
trnay-gua_38 NA other upstream 268556 8847067 ~ 8847155 (+)
G71610 NA other downstream 1084328 10207415 ~ 10208197 (+)
LOC120561920 LOC106676202,LOC102303534 other downstream 1622921 10746008 ~ 10751849 (+)
LOC120562569 LOC104943359,LOC103359623,LOC101482188,LOC107100615,LOC106961743 other downstream 1662567 10785654 ~ 10961130 (+)
G71743 NA other downstream 1697208 10820295 ~ 10821500 (+)
depdc1b depdc1b,LOC103388656,LOC101486657 other downstream 2344258 11467345 ~ 11482423 (+)

Expression


Co-expression Network