twist1b (twist1,LOC100712142,LOC103366955)


Basic Information

Item Value
gene id twist1b
gene name twist1,LOC100712142,LOC103366955
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19611746 ~ 19613152 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804886.1
TCTCAAGTATCAGAAAAGATTTGTCCTCCCAGGATCCCATCTATGGATACTTTGGTGTCTTCAAAGCCAGATAAACTTACAGGTGGACCAATTCCGTGACTTCATGAGAGGGAAATCattttttggacactttctTGTCGTCATCTACCCAAGTGGAGATGTCTGAGGAAAATCTGGGGGAAGAGTCGGGCAGCTCTCCTGTCTCTCCTGTGGACAGCCTGAGCAACAGCGAGGGGGAGCTGGACAGACAGCCGAAGAGGtgtgggaggaagaggagaccgAGCAGGAAAAACGGGGAGGACTCAGATAGCCCGACCCCTGGGAAAAGAGGGAAGaagtccagcagcagcagcccccAGTCTTTCGAGGAGCTCCAGTCGCAGCGGGTCATGGCAAACGTCCGGGAGCGACAGAGGACCCAGTCTCTCAACGAGGCGTTCGCATCTTTGCGGAAAATTATCCCCACTTTGCCATCTGACAAACTTAGCAAAATACAGACCCTAAAACTTGCAGCCAGATACATCGACTTTCTCTACCAGGTGCTGCAGAGCGACGAGCTGGACTCCAAAATGTCAAGTTGTAGTTATGTGGCTCATGAGAGGCTGAGCTACGCCTTCTCTGTGTGGAGGATGGAGGGCGCTTGGTCCATGTCAACATCCCACTAACATCTGGAGAAATTATGCCCTATGATGACTGCTGAATCTACTTATCACATTCCGACGGGACAAATCTGGAGTCCAATGCTGGATACATGGGATCACTCTATTTAAACCAAAGACCACAGAAGCTCTGGGGGATCATTTTTTGCAGAGGCCCGATAGGGACCTGCAGCCGTGTGATAGCCTATTGCTCCACACACTTCCATTCTGATGcgttttcattttgttgacgacgaatgttaaaaaatatcatgttttaggctttttttttttttttttttttaaggaaaggATATTTTGAATGCATGTCTTTTGACTTATTTCTGTGGAGGTCAAAGTGCATTATTGAAGCAGTTGTGAGACTGTCAACTGGTGGTGTAGCTCACATTATAGGCTGACTGTGTGGATCTAACctgtgcaacaacaacaaaatattgtcagaatacatttatttatttattggtgAAACGTGTTACATTGAGGAATAGATCCTGTGTctgaaatacaaatacattcCTATTTTTATCATCGTTTCTTTTGTAAATGTCTGTATATTTTTTGCATTAAAGAAAATGACGACTAAA

Function

symbol description
twist1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and bHLH transcription factor binding activity. Involved in several processes, including animal organ development; regulation of cellular response to stress; and regulation of gene expression. Located in nucleus. Implicated in Saethre-Chotzen syndrome; Sweeney-Cox syndrome; acrocephalosyndactylia; and craniosynostosis. Biomarker of pulmonary fibrosis.

NR:

description
PREDICTED: twist-related protein 2 isoform X1

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804886.1 True 1243 mRNA 0.45 2 19611746 19613152

Neighbor

gene id symbol gene type direction distance location
macc1 macc1 coding upstream 16391 19590103 ~ 19595355 (+)
sp8b sp8,LOC101158882,LOC104926695,LOC101468530,LOC107378685 coding upstream 28992 19577552 ~ 19582754 (+)
LOC120562733 LOC100705529,LOC103366949,LOC102296000 coding upstream 134430 19459555 ~ 19477316 (+)
LOC120561621 LOC105018833 coding upstream 165629 19440837 ~ 19446117 (+)
slc6a19b LOC104965566 coding upstream 171513 19434690 ~ 19440233 (+)
ankrd28b ankrd28 coding downstream 61991 19675143 ~ 19693798 (+)
hacl1 hacl1 coding downstream 81763 19694915 ~ 19700987 (+)
colq colq,LOC103374283 coding downstream 87928 19701080 ~ 19710338 (+)
fkbp14 fkbp14,LOC102795884 coding downstream 110256 19723408 ~ 19725265 (+)
cpvl cpvl,LOC102795305 coding downstream 140548 19753700 ~ 19760022 (+)
LOC120562732 NA non-coding upstream 155130 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 291698 19319438 ~ 19320048 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding upstream 335230 19272727 ~ 19276516 (+)
LOC120562631 fxyd7,LOC103388498 non-coding upstream 448942 19159464 ~ 19162804 (+)
LOC120562629 NA non-coding upstream 452728 19158475 ~ 19159018 (+)
LOC120562701 NA non-coding downstream 1351 19614503 ~ 19625611 (+)
G73776 hdac9 non-coding downstream 21721 19634873 ~ 19639459 (+)
G73836 NA non-coding downstream 207083 19820235 ~ 19820591 (+)
G73871 NA non-coding downstream 405957 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 427719 20040871 ~ 20046380 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 158463 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 419644 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 452751 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 749788 18833245 ~ 18861958 (+)
proser3 NA other upstream 783058 18819201 ~ 18828688 (+)
G73779 hdac9 other downstream 33823 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 579538 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 601436 20214588 ~ 20226991 (+)
gra NA other downstream 709178 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 987171 20600323 ~ 20605165 (+)

Expression


Co-expression Network