LOC120561714


Basic Information

Item Value
gene id LOC120561714
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16984611 ~ 16990597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804925.1
AGCTCAAACTAATAGCCTGTCAGACGCATAAAACACTGTTGCTCTGAGGTCGTCATTACTGCAGGACTGgcctaaaaatacaaataaggaGAACAATATTTGCTGCAAAAGAAAAGAGGGGTTTAAGAAACAAAGATCTACGCAGGAACTCTGCATCTACTGCACATCTCCTTTAGCCTACCTCCGTTGTGGTTTACTCTGCATCAATAGCCATGGAAGTGGACGACAATGAGTGTGAATATGTATTTGAGCCCCACATCACTGAGGAGCACATAGAGACTCACTATGGAAATGTCCACTGCATCATGGTAGGAACTCCGAGGGCAAACCACCCTGTCCTCCTGACATTTCATGATGTTGGACTGAACCACAAGTCCTGTTTTGACACACTGTTCAACCACGAGGACATGCGGGAAATCAACAGCTATTTGCCTGTTGTCCACGTTGAAGCACCAGGACAACATGAGGGAGCCAAAACTCTGCCTTCTTCATATATTTACCCTTCCATGGACCAGCTATCTGAAGCACTGCCCGCTGTCCTCAAACACTTTGGGTTGCGTAGAGTTATTGGACTTGGAGTTGGAGCTGGAGCCTACATCCTGGCTAAGTTCGCTctgAATCACCCAGATCTGGTGGACGGATTGGTTTTGATCAACATCAACCCCAGCGCTGAAGGATTAATTGATTCTGTTGCAAGCAAGctCACCGAATGGACCCACACTCTCCCGGACACGGTCATCGCACATTTGTTTGGAAAGGATGAGATCGAGAACAACCATGACCTCATAGCTACTTACCGTCACAACATCACAACAACGATGAATCAGTCCAACTTGACTCAGTTTCTCCACTCCTACAACAACCGCAACGCTCTGGAGGTGGAGAGGCCTATTCCTGGAGAAAACATCAATTTCAGGACCCTCAAGTGCTCCACCCTGCTGATCGTAGGAGATAATTCTCCAGCTGTGGAGGCCGTGGTCGACTGCAACTCTAAACTCAACCCCACCGAGACCACTCTGCTCAAGATGGcggactgtggaggacttccTCAGGTTGATCAGCCAGCCAAAGTGATTGAAGCCTTGAAATATTTCATCCAGGGCTTGGGATACTTGTCCAGTGTCAGCATGACCAGACTTCGGTCACGGACGACCTCCAGCTCCAGCATCACGTCCATGGATGGCCCTCGGAGCCGCGCACACACCAACGAGCTGCAGCATGAACATACACACTCACGCGGCACCGAAGAGAAGCGCGGGCGCTCACACACTGACACCCCAATGGAGAGTATGTCCAAAAGTAATGTGGACCACATTGTCTCAAAGTCCAGTGAAGTGGCATGCTAGAGCGCATTCTGCACTACATCGCATGCGCTTAAATCAAATCATACCTCATTGTATCTACTCAGACAGCTTCCCACTGTCATGCCCTGTCATCTGCACTATCTCTAGCTGAAAGGTCACAGGTCATATGTGACTTTGCTCTATGTAAACTCTGTCTCCCTATTCCTTCATCAATTTAACCATCCTTTCCTGCGTCTTTCTCTTGGCATCATTCCTAGTTTCTCTATCCAActgctctcctcctctctgaacTGTTACTGTATGTCATCCTTCTTtactacatgtttttttttccctcactgTCCCTATTCATGTCCTTGTCTACTTTCAAACTGAAATGTATTCTTTGAAAATCATGTGTTTATGTAATacacaaatgcatattaatgtataAGGAATGTCAATACAATGTAAAGACAGTATAAAAAGTGCAAAAGTGTAAAAACTGTATGCTCATAACTGTAGgaacatgtatttattattcaCAACTGTGACAGCTGTGTGTTATTAACTGTAGGTATGTTTTATAGACATACTTTTTAgattcaaaaatgttttatatttggaCTTGCATTGGGAATTCTGTGTAATTATTACTATAAAGACACGTTACAGTAAATTCAACTCAATTAAAACAGAGGACTTCATGTAAGTAGCTCTTGTGCTATCAGTGATTAaactttttactgtaaataatcA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804925.1 True 2042 mRNA 0.44 12 16984611 16990597

Neighbor

gene id symbol gene type direction distance location
sntb1 sntb1 coding upstream 86646 16858023 ~ 16897965 (+)
LOC120562165 nov coding upstream 134379 16845953 ~ 16850232 (+)
LOC120563118 scgn,LOC103369094,LOC103151166,LOC106960462 coding upstream 153448 16816442 ~ 16831163 (+)
LOC120562315 NA coding upstream 168354 16732632 ~ 16816257 (+)
LOC120562939 NA coding upstream 255263 16726348 ~ 16729348 (+)
LOC120561713 ptk2 coding downstream 4712 16995309 ~ 17065077 (+)
mrs2 mrs2,LOC105917271 coding downstream 88810 17079407 ~ 17093876 (+)
LOC120562623 NA coding downstream 104459 17095056 ~ 17107677 (+)
LOC120562784 cpq coding downstream 119279 17109876 ~ 17129613 (+)
mrpl13 mrpl13 coding downstream 159228 17149825 ~ 17162698 (+)
G72859 NA non-coding upstream 21771 16959788 ~ 16962840 (+)
G72852 NA non-coding upstream 253567 16730837 ~ 16731044 (+)
G72801 NA non-coding upstream 490036 16494237 ~ 16494575 (+)
G72798 e2f3 non-coding upstream 494230 16489593 ~ 16490381 (+)
G72797 NA non-coding upstream 498692 16485713 ~ 16485919 (+)
G72879 NA non-coding downstream 1119 16991716 ~ 16991989 (+)
G72862 NA non-coding downstream 74992 17065589 ~ 17065911 (+)
trnar-acg_16 NA non-coding downstream 378106 17368703 ~ 17368775 (+)
G73019 NA non-coding downstream 401671 17392268 ~ 17403627 (+)
G73027 NA non-coding downstream 437231 17427828 ~ 17463027 (+)
G72750 LOC104952694,LOC106925895 other upstream 912410 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1424319 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2351890 14626478 ~ 14632721 (+)
G72506 NA other upstream 2558431 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 2614520 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 458988 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 466046 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 654916 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 760333 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 1408459 18399056 ~ 18420721 (+)

Expression


Co-expression Network