LOC120561717


Basic Information

Item Value
gene id LOC120561717
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32405133 ~ 32421472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804930.1
ATCTGCCTCACTTTACATTTGCCATGTCGCCGCCATCTTTGACccacaaataataaaaacacaaatgataTTTTTGGCGAAGAAGTTCCGAAACCGTTACAATACGCTAACGTATACCAGAAACCAGCGTAAATAatagatcctttttttttgacaCCTTCATTTTGAGATGTCACTGGTGCATCTTGGGCAGCAGCTGCTGGAGGCGGTGCGGAGTGGACAGGATGATGATGTCAAAGCTCTGATGGCCAATGGTGCTCCGTTCACCACGGACTGGCTGGGCTCATCGCCGCTGCATTTCGCAGCCCAGTACGGTCATCATTCCACCGCCGAGGTGCTGCTGCGTGCCGGGGTCAGCAGGGACGCCCGAACAAAGGTGGACAAGACGCCTCTTCACATCGCCGCCTCAGAGGGTCACTCCACCATAGTGGACCTGTTAGCGCAGAACGGCGCCAACATCAACGCCAAAGACATGCTGAAGATGACTGCGCTGCACTGGGCGGCTCAGCACGGCCACAGGGAGGTGGCGGAGCTCCTGCTGAGGCACGGCGCAGACGTCCACTGCCTCAGCAAGTTTGACAAGACGCCCTTCGACATCGCCATGGATACCAGCAACACGGAGCTGATGATACTGCTACAGGACGGCATGCAGAACCAGGTAAACATGGACCCAGAGTCCCACTACATCATCCGTGCTGGTGGGCTGGTCAACCTCTCAGACCTGGTCACCACCACCAAAACCAGTGCAGGCAAGTCAGAGGACGTCATGGCTGCCGAGTCGGTGGAAGCAACCTTTCAGCATGTGGTGGGCGACGGCGGGCAAAGGGTCATTACCATAGTGACGGACCAACACGGCAACCTGCAGCCAGCGTCCCTGGGCCAGCAGTACATCTTCACCCTGCAGGGGCAGCAGATGGTGGCTTTGCCAGCCGGCACAATCACAGAGGAGGTGGTGGTCGAGGATCCTCAGCAGGCCACGCTGAAACGCAAGAGAAACACAGACCCCTCGGCCAATCACGTCGGCCAAAAAGACAAGaaGGTGAAAGAGAGTCGAGAGCAGCTGCAGCGGCAGCTGCAGGAAGCCAATCTCAAAGCCGAGGGGTACCAGCAGCAGCTCCTACAGAAGGAGCAGGAGGCCGAGCAGTATCGCCTTAAACTGGAGCAGGCCATAGCAACCAGTAACAGCAGCATCAGCAACACCATCACTGCGACGACCGTTACCTTAAACAACGGCGCTACAGtgaagcagcaggaggaggaggaggaggaggaggaggaggaggagatgatgGTAGAGGAGCAGCTAGAGACGACACAGGAAGCCGCAACAAAAGAAGTGGAAGAAGGGGAGAGGGAAAACATGGAGGAGGGGGAAGAGGTCATCTTCCTTCCAGAAGATGCGATTCTTGTGAACGAGCGCGAGCTGGAAGTGGAGGTCGATGGTACAGAGGAAACACATAAGTCTCCCCCCCGTCAGCGAGGCCAAGGTAGAAGGAGAGGCAGAGGTGGACGCAGACACTAGCTGACATGTTTTGCGATCATCTATTTAACTGATTTTATAACCTTTTGTAAACAAAGACTTTTGTAAATATGTCCAGGTTTTCGTGCGGCACAAACATCAAGAGGACTTTAGCTTTACATGACTCTATAGACCATTTCACAGCTGTAAACATTAACATTCTAAATGGCCCCGGTGGTAATGTACCGTATGTGAATGACATCAACTGACAGGAAGTCAGCAAGAGGCcaggctgttgcctagcaatggGATTCCATTAAAAAAGGTCTATAGGACTTTACATCAGGCACACACTGAGCCTGGAGAGGACATGGTTGGTGTCATGGACTTTGGATGATGTTCAGTTCTTCACTACTTTATCTCTTTGTGTTCCATAGCTCTGGGATCACCTGTAATTTCGTGACCAGCCTCCCAACTGAATGGTAGCTGAGCTAGGTATAGTACTAGCTAAAGAATTCACCTTTATAATGGTACGTGTCCACCGGAAAACGGCATTTCCATGcgagcagccgtgcaatgcattccGGTAGCGTCGCGGCCACTTTCGAGAAGCGGGGCGACGAGTTGCCCGCtcttcatttgcataaagttgaaatgagatttttgataaataatcatcagtaatgtggatataatgactaagtgggtaaaggcaaacaaca
>XM_039804931.1
ATCTGCCTCACTTTACATTTGCCATGTCGCCGCCATCTTTGACccacaaataataaaaacacaaatgataTTTTTGGCGAAGAAGTTCCGAAACCGTTACAATACGCTAACGTATACCAGAAACCAGCGTAAATAatagatcctttttttttgacaCCTTCATTTTGAGATGTCACTGGTGCATCTTGGGCAGCAGCTGCTGGAGGCGGTGCGGAGTGGACAGGATGATGATGTCAAAGCTCTGATGGCCAATGGTGCTCCGTTCACCACGGACTGGCTGGGCTCATCGCCGCTGCATTTCGCAGCCCAGTACGGTCATCATTCCACCGCCGAGGTGCTGCTGCGTGCCGGGGTCAGCAGGGACGCCCGAACAAAGGTGGACAAGACGCCTCTTCACATCGCCGCCTCAGAGGGTCACTCCACCATAGTGGACCTGTTAGCGCAGAACGGCGCCAACATCAACGCCAAAGACATGCTGAAGATGACTGCGCTGCACTGGGCGGCTCAGCACGGCCACAGGGAGGTGGCGGAGCTCCTGCTGAGGCACGGCGCAGACGTCCACTGCCTCAGCAAGTTTGACAAGACGCCCTTCGACATCGCCATGGATACCAGCAACACGGAGCTGATGATACTGCTACAGGACGGCATGCAGAACCAGGTAAACATGGACCCAGAGTCCCACTACATCATCCGTGCTGGTGGGCTGGTCAACCTCTCAGACCTGGTCACCACCACCAAAACCAGTGCAGGCAAGTCAGAGGACGTCATGGCTGCCGAGTCGGTGGAAGCAACCTTTCAGCATGTGGTGGGCGACGGCGGGCAAAGGGTCATTACCATAGTGACGGACCAACACGGCAACCTGCAGCCAGCGTCCCTGGGCCAGCAGTACATCTTCACCCTGCAGGGGCAGCAGATGGTGGCTTTGCCAGCCGGCACAATCACAGAGGAGGTGGTGGTCGAGGATCCTCAGCAGGCCACGCTGAAACGCAAGAGAAACACAGACCCCTCGGCCAATCACGTCGGCCAAAAAGACAAGaaGGTGAAAGAGAGTCGAGAGCAGCTGCAGCGGCAGCTGCAGGAAGCCAATCTCAAAGCCGAGGGGTACCAGCAGCAGCTCCTACAGAAGGAGCAGGAGGCCGAGCAGTATCGCCTTAAACTGGAGCAGGCCATAGCAACCAGTAACAGCAGCATCAGCAACACCATCACTGCGACGACCGTTACCTTAAACAACGGCGCTACAGtgaagcagcaggaggaggaggaggaggaggaggaggaggaggagatgatgGTAGAGGAGCAGCTAGAGACGACACAGGAAGCCGCAACAAAAGAAGTGGAAGAAGGGGAGAGGGAAAACATGGAGGAGGGGGAAGAGGTCATCTTCCTTCCAGAAGATGCGATTCTTGTGAACGAGCGCGAGCTGGAAGTGGAGGTCGATGGTACAGAGGAAACACATAAGTCTCCCCCCCGTCAGCGAGGCCAAGCTCTGGGATCACCTGTAATTTCGTGACCAGCCTCCCAACTGAATGGTAGCTGAGCTAGgATTTGTGTCGAGGGCGCTCAGGCTGTGATGTGTCACTCGGTGAACGGGCCTCAGTGGAGGCGCACAGTACAGTCAAAGATAATCAAGAAGCAATTACAGTGAGAGCACTCGGTGATCTCTTATCCAGGGTGACCTGCAGCGAGCAGATAGGAGCTTCAACAGAATGCACCGCAGTTGATGGGAATCAAACCTGTGACCGCTTTATTTTTAGAGCAGCGTCTTTAGCCACTCAGCCACCGTCCACCCAGTTATTTTACTGCGTAATATTATTGATTTAATACGAGTAACGACAAGATGTAAAATTACGTTTTAATGTTAATTCTTTGTCTACGTGACGGTTTTCACACACGTCTGTTGGGAGATGTTCATGACCAAAATCATGAGTGCAGGGATAAGGATGGTTTAACTTTAAACGAGGCAGCATTAGGGCCATTTCCCACAAGGACAAATTACAGAGCCAGTTTGGGGATTTtgaatttgatttttttcatcaATTCACAGCCCATCTTCTCATTATTGAAACTGTCGGGGGACGTTTGTTTACATGTTTGCACTTCAGGGCTTTATTCATCAGAACTTCTTATTTTTTGACACAACAAGTTTGTAAAACGTAATTATGTGAttctttttgtgtctgttttttgtcaCTGAGGCAATAAAGTGTGtacttattaa
>XR_005639638.1
ATCTGCCTCACTTTACATTTGCCATGTCGCCGCCATCTTTGACccacaaataataaaaacacaaatgataTTTTTGGCGAAGAAGTTCCGAAACCGTTACAATACGCTAACGTATACCAGAAACCAGCGTAAATAatagatcctttttttttgacaCCTTCATTTTGAGATGTCACTGGTGCATCTTGGGCAGCAGCTGCTGGAGGCGGTGCGGAGTGGACAGGATGATGATGTCAAAGCTCTGATGGCCAATGGTGCTCCGTTCACCACGGACTGGCTGGGCTCATCGCCGCTGCATTTCGCAGCCCAGTACGGTCATCATTCCACCGCCGAGGTGCTGCTGCGTGCCGGGGTCAGCAGGGACGCCCGAACAAAGGTGGACAAGACGCCTCTTCACATCGCCGCCTCAGAGGGTCACTCCACCATAGTGGACCTGTTAGCGCAGAACGGCGCCAACATCAACGCCAAAGACATGCTGAAGATGACTGCGCTGCACTGGGCGGCTCAGCACGGCCACAGGGAGGTGGCGGAGCTCCTGCTGAGGCACGGCGCAGACGTCCACTGCCTCAGCAAGTTTGACAAGACGCCCTTCGACATCGCCATGGATACCAGCAACACGGAGCTGATGATACTGCTACAGGACGGCATGCAGAACCAGGTAAACATGGACCCAGAGTCCCACTACATCATCCGTGCTGGTGGGCTGGTCAACCTCTCAGACCTGGTCACCACCACCAAAACCAGTGCAGGCAAGTCAGAGGACGTCATGGCTGCCGAGTCGGTGGAAGCAACCTTTCAGCATGTGGTGGGCGACGGCGGGCAAAGGGTCATTACCATAGTGACGGACCAACACGGCAACCTGCAGCCAGCGTCCCTGGGCCAGCAGTACATCTTCACCCTGCAGGGGCAGCAGATGGTGGCTTTGCCAGCCGGCACAATCACAGAGGAGGTGGTGGTCGAGGATCCTCAGCAGGCCACGCTGAAACGCAAGAGAAACACAGACCCCTCGGCCAATCACGTCGGCCAAAAAGACAAGaaGGTGAAAGAGAGTCGAGAGCAGCTGCAGCGGCAGCTGCAGGAAGCCAATCTCAAAGCCGAGGGGTACCAGCAGCAGCTCCTACAGAAGGAGCAGGAGGCCGAGCAGTATCGCCTTAAACTGGAGCAGGCCATAGCAACCAGTAACAGCAGCATCAGCAACACCATCACTGCGACGACCGTTACCTTAAACAACGGCGCTACAGtgaagcagcaggaggaggaggaggaggaggaggaggaggaggagatgatgGTAGAGGAGCAGCTAGAGACGACACAGGAAGCCGCAACAAAAGAAGTGGAAGAAGGGGAGAGGGAAAACATGGAGGAGGGGGAAGAGGTCATCTTCCTTCCAGAAGATGCGATTCTTGTGAACGAGCGCGAGCTGGAAGTGGAGGTCGATGGTACAGAGGAAACACATAAGTCTCCCCCCCGTCAGCGAGGCCAAGGTAGAAGGAGAGGCAGAGGTGGACGCAGACACTAGCTGACATGTTTTGCGATCATCTATTTAACTGATTTTATAACCTTTTGTAAACAAAGACTTTTGTAAATATGTCCAGGTTTTCGTGCGGCACAAACATCAAGAGGACTTTAGCTTTACATGACTCTATAGACCATTTCACAGCTGTAAACATTAACATTCTAAATGGCCCCGGTGGTAATGTACCGTATGTGAATGACATCAACTGACAGGAAGTCAGCAAGAGGCcaggctgttgcctagcaatggGATTCCATTAAAAAAGGTCTATAGGACTTTACATCAGGCACACACTGAGCCTGGAGAGGACATGGTTGGTGTCATGGACTTTGGATGATGTTCAGTTCTTCACTACTTTATCTCTTTGTGTTCCATAGCTCTGGGATCACCTGTAATTTCGTGACCAGCCTCCCAACTGAATGGTAGCTGAGCTAGgATTTGTGTCGAGGGCGCTCAGGCTGTGATGTGTCACTCGGTGAACGGGCCTCAGTGGAGGCGCACAGTACAGTCAAAGATAATCAAGAAGCAATTACAGTGAGAGCACTCGGTGATCTCTTATCCAGGGTGACCTGCAGCGAGCAGATAGGAGCTTCAACAGAATGCACCGCAGTTGATGGGAATCAAACCTGTGACCGCTTTATTTTTAGAGCAGCGTCTTTAGCCACTCAGCCACCGTCCACCCAGTTATTTTACTGCGTAATATTATTGATTTAATACGAGTAACGACAAGATGTAAAATTACGTTTTAATGTTAATTCTTTGTCTACGTGACGGTTTTCACACACGTCTGTTGGGAGATGTTCATGACCAAAATCATGAGTGCAGGGATAAGGATGGTTTAACTTTAAACGAGGCAGCATTAGGGCCATTTCCCACAAGGACAAATTACAGAGCCAGTTTGGGGATTTtgaatttgatttttttcatcaATTCACAGCCCATCTTCTCATTATTGAAACTGTCGGGGGACGTTTGTTTACATGTTTGCACTTCAGGGCTTTATTCATCAGAACTTCTTATTTTTTGACACAACAAGTTTGTAAAACGTAATTATGTGAttctttttgtgtctgttttttgtcaCTGAGGCAATAAAGTGTGtacttattaa
>XR_005639639.1
ATCTGCCTCACTTTACATTTGCCATGTCGCCGCCATCTTTGACccacaaataataaaaacacaaatgataTTTTTGGCGAAGAAGTTCCGAAACCGTTACAATACGCTAACGTATACCAGAAACCAGCGTAAATAatagatcctttttttttgacaCCTTCATTTTGAGATGTCACTGGTGCATCTTGGGCAGCAGCTGCTGGAGGCGGTGCGGAGTGGACAGGATGATGATGTCAAAGCTCTGATGGCCAATGGTGCTCCGTTCACCACGGACTGGCTGGGCTCATCGCCGCTGCATTTCGCAGCCCAGTACGGTCATCATTCCACCGCCGAGGTGCTGCTGCGTGCCGGGGTCAGCAGGGACGCCCGAACAAAGGTGGACAAGACGCCTCTTCACATCGCCGCCTCAGAGGGTCACTCCACCATAGTGGACCTGTTAGCGCAGAACGGCGCCAACATCAACGCCAAAGACATGCTGAAGATGACTGCGCTGCACTGGGCGGCTCAGCACGGCCACAGGGAGGTGGCGGAGCTCCTGCTGAGGCACGGCGCAGACGTCCACTGCCTCAGCAAGTTTGACAAGACGCCCTTCGACATCGCCATGGATACCAGCAACACGGAGCTGATGATACTGCTACAGGACGGCATGCAGAACCAGGTAAACATGGACCCAGAGTCCCACTACATCATCCGTGCTGGTGGGCTGGTCAACCTCTCAGACCTGGTCACCACCACCAAAACCAGTGCAGGCAAGTCAGAGGACGTCATGGCTGCCGAGTCGGTGGAAGCAACCTTTCAGCATGTGGTGGGCGACGGCGGGCAAAGGGTCATTACCATAGTGACGGACCAACACGGCAACCTGCAGCCAGCGTCCCTGGGCCAGCAGTACATCTTCACCCTGCAGGGGCAGCAGATGGTGGCTTTGCCAGCCGGCACAATCACAGAGGAGGTGGTGGTCGAGGATCCTCAGCAGGCCACGCTGAAACGCAAGAGAAACACAGACCCCTCGGCCAATCACGTCGGCCAAAAAGACAAGaaGGTGAAAGAGAGTCGAGAGCAGCTGCAGCGGCAGCTGCAGGAAGCCAATCTCAAAGCCGAGGGGTACCAGCAGCAGCTCCTACAGAAGGAGCAGGAGGCCGAGCAGTATCGCCTTAAACTGGAGCAGGCCATAGCAACCAGTAACAGCAGCATCAGCAACACCATCACTGCGACGACCGTTACCTTAAACAACGGCGCTACAGtgaagcagcaggaggaggaggaggaggaggaggaggaggaggagatgatgGTAGAGGAGCAGCTAGAGACGACACAGGAAGCCGCAACAAAAGAAGTGGAAGAAGGGGAGAGGGAAAACATGGAGGAGGGGGAAGAGGTCATCTTCCTTCCAGAAGATGCGATTCTTGTGAACGAGCGCGAGCTGGAAGTGGAGGTCGATGGTACAGAGGAAACACATAAGTCTCCCCCCCGTCAGCGAGGCCAAGGTAGAAGGAGAGGCAGAGGTGGACGCAGACACTAGCTGACATGTTTTGCGATCATCTATTTAACTGATTTTATAACCTTTTGTAAACAAAGACTTTTGTAAATATGTCCAGGTTTTCGTGCGGCACAAACATCAAGAGGACTTTAGCTTTACATGACTCTATAGACCATTTCACAGCTGTAAACATTAACATTCTAAATGGCCCCGGTGGTAATGTACCGTATGTGAATGACATCAACTGACAGGAAGTCAGCAAGAGGCcaggctgttgcctagcaatggGATTCCATTAAAAAAGCTCTGGGATCACCTGTAATTTCGTGACCAGCCTCCCAACTGAATGGTAGCTGAGCTAGgATTTGTGTCGAGGGCGCTCAGGCTGTGATGTGTCACTCGGTGAACGGGCCTCAGTGGAGGCGCACAGTACAGTCAAAGATAATCAAGAAGCAATTACAGTGAGAGCACTCGGTGATCTCTTATCCAGGGTGACCTGCAGCGAGCAGATAGGAGCTTCAACAGAATGCACCGCAGTTGATGGGAATCAAACCTGTGACCGCTTTATTTTTAGAGCAGCGTCTTTAGCCACTCAGCCACCGTCCACCCAGTTATTTTACTGCGTAATATTATTGATTTAATACGAGTAACGACAAGATGTAAAATTACGTTTTAATGTTAATTCTTTGTCTACGTGACGGTTTTCACACACGTCTGTTGGGAGATGTTCATGACCAAAATCATGAGTGCAGGGATAAGGATGGTTTAACTTTAAACGAGGCAGCATTAGGGCCATTTCCCACAAGGACAAATTACAGAGCCAGTTTGGGGATTTtgaatttgatttttttcatcaATTCACAGCCCATCTTCTCATTATTGAAACTGTCGGGGGACGTTTGTTTACATGTTTGCACTTCAGGGCTTTATTCATCAGAACTTCTTATTTTTTGACACAACAAGTTTGTAAAACGTAATTATGTGAttctttttgtgtctgttttttgtcaCTGAGGCAATAAAGTGTGtacttattaa

Function

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804930.1 False 2181 mRNA 0.52 8 32405133 32420184
XM_039804931.1 False 2221 mRNA 0.52 10 32405133 32421472
XR_005639638.1 True 2630 transcript 0.50 9 32405133 32421472
XR_005639639.1 False 2518 transcript 0.50 10 32405133 32421472

Neighbor

gene id symbol gene type direction distance location
LOC120562270 scap coding upstream 30946 32315022 ~ 32374187 (+)
elp6 elp6,LOC102790853 coding upstream 90220 32309084 ~ 32314913 (+)
cspg5a cspg5,LOC103364230 coding upstream 111431 32229003 ~ 32293702 (+)
LOC120562445 NA coding upstream 192956 32204754 ~ 32212177 (+)
smarcc1a smarcc1 coding upstream 212085 32166319 ~ 32193048 (+)
LOC120562193 LOC103388706 coding downstream 431885 32853357 ~ 32888350 (+)
tnfaip8l2b tnfaip8l2 coding downstream 471059 32892531 ~ 32900329 (+)
scnm1 LOC104949611 coding downstream 483889 32905361 ~ 32911192 (+)
LOC120562446 NA coding downstream 525839 32947311 ~ 32950710 (+)
hormad1 NA coding downstream 610767 33032239 ~ 33049137 (+)
G77762 NA non-coding upstream 28220 32374697 ~ 32376913 (+)
G77764 NA non-coding upstream 36055 32360545 ~ 32369078 (+)
G77757 NA non-coding upstream 109813 32295095 ~ 32295320 (+)
G77722 LOC102207529,LOC102306104 non-coding upstream 264990 32138777 ~ 32140143 (+)
G77687 NA non-coding upstream 414763 31989886 ~ 31990370 (+)
G77776 NA non-coding downstream 31715 32453187 ~ 32453410 (+)
G77862 NA non-coding downstream 344799 32766271 ~ 32766508 (+)
G77867 NA non-coding downstream 399771 32821243 ~ 32821488 (+)
G77883 NA non-coding downstream 506862 32928334 ~ 32979901 (+)
LOC120563080 NA non-coding downstream 530505 32951977 ~ 32952703 (+)
G77682 tbx20 other upstream 425224 31976318 ~ 31979909 (+)
G77447 NA other upstream 1268987 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 1673524 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 2044545 30351495 ~ 30360588 (+)
G77239 NA other upstream 2280495 30123702 ~ 30124638 (+)
G77888 NA other downstream 678941 33100413 ~ 33101534 (+)
bmper bmper other downstream 1404615 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 1472888 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 1569070 33990542 ~ 34042648 (+)
G78200 NA other downstream 2107883 34529355 ~ 34544379 (+)

Expression


Co-expression Network