LOC120561719 (vmo1)


Basic Information

Item Value
gene id LOC120561719
gene name vmo1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30218997 ~ 30223524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804935.1
ACCCCCCGGTACTTGTTAGTTGGCATTTCAGAGTGAGACACTACCTGATTGCTGTCAATATGGCGAGTCTTTTCACCGTTGTGGCCATGCTGGCGGTGATGTCCAGTGGGTTATGTGAGGagaaaacctttctgcagcgaGCTGGTGTGGCCTTTAACAGCAGACAGTACAGATCTCTGCTTACTGTGAACAACGGAGAGCAGTTTGGAAACTGGACCTGGCCCGAGATGTGTCCTGACAAGTTCTTCGCTGTTGGCTTCAGTGTTAGGGTGGAGTCTAACCAGTACGGGGCGGATGACACCGCTCTGAATGGGATCCGCCTCATCTGTGCCAAAGACGGGAGCCGAAGCTTCCTGTATTCTATTGAATCCCACAGTGGCTACTTCGGTGAATGGACCCAGCCCCAGTACTGCCCCAGTGGCATGCTCTCCTCTTTCCAGATCCGCGTGGAGCCCCATCAGGGTCTTTTCGGTGATGACACGGCCATCAACAACATCAAGTTCCGCTGCAGCAGCAACCCGACGCTGGAGGCGGCCGGCATGGACTGGGGAGAGTACGGCCACTGGAGCCAGGAGTGTCACGATGGTGGAATCTGTGGCATCGAGACAAAGATGGAGGAATACCAGTATGGCCTGGACGACTCCAGCCTCAATGATGTGCGCTTCCATTGCTGTGCCAAGCCTCAGCAGTGATCGGCAGGTGAATATCAGCACGCCTGAGCAGTTTGATCCAACGCCCTGAATTCGAAGCtgacaaataataaaaagcTCATTTGAATTGC

Function

symbol description
vmo1 Located in extracellular exosome.

NR:

description
PREDICTED: vitelline membrane outer layer protein 1 homolog

GO:

id name namespace
GO:0030704 vitelline membrane formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804935.1 True 781 mRNA 0.54 4 30218997 30223524

Neighbor

gene id symbol gene type direction distance location
LOC120562442 NA coding upstream 2302 30212639 ~ 30216695 (+)
LOC120562234 NA coding upstream 6761 30205177 ~ 30212236 (+)
brd2b LOC104928643,LOC103356858 coding upstream 13941 30186346 ~ 30205056 (+)
tap1 tap1 coding upstream 36855 30170014 ~ 30182142 (+)
LOC120561633 NA coding upstream 81428 30136281 ~ 30137569 (+)
LOC120562225 LOC103356864 coding downstream 139183 30362707 ~ 30390432 (+)
si:dkey-82o10.4 NA coding downstream 481507 30705031 ~ 30713391 (+)
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding downstream 685506 30909030 ~ 30949188 (+)
LOC120562211 ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406 coding downstream 727709 30951233 ~ 30965417 (+)
nr1d2a LOC103375162 coding downstream 745057 30968581 ~ 30976242 (+)
LOC120562235 NA non-coding upstream 394 30216748 ~ 30218603 (+)
LOC120562092 NA non-coding upstream 97901 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 320244 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 405456 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 633997 29582757 ~ 29585000 (+)
G77260 NA non-coding downstream 174752 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 753217 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 754803 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 791609 31015133 ~ 31016447 (+)
G77555 NA non-coding downstream 1290612 31514136 ~ 31514561 (+)
G77239 NA other upstream 94359 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 109452 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 806584 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 828944 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 888739 29328789 ~ 29330258 (+)
LOC120562443 NA other downstream 127971 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 463814 30687338 ~ 30731609 (+)
G77447 NA other downstream 911305 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1752794 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 2181609 32405133 ~ 32421472 (+)

Expression


Co-expression Network