sdha (sdha)


Basic Information

Item Value
gene id sdha
gene name sdha
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12555942 ~ 12567664 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804998.1
CTTATCCTCCACCGTAGCTCAGAATAGGTCCTTCAACTGACAACATGGCGAGTGTCCGGGCTGCCTCCCGTCTCCTCTCTAAGAGGGTATTATCTAAAACTAAATCAGTCCCTGCTGCTGCAGTTCAGGGATCCAGGAATTTTCACTTCTCCATCTATGGCAAGAAAAGTGCCAAAATATCAGATGATATTTCTACTCAGTACCCAGTAGTGGATCATGAATTTGATGCTGTGGTGGTCGGAGCTGGAGGAGCAGGACTTAGGGCAGCCTTTGGCCTGTCCGAGGCTGGCTTCAACACTGCCTGCGTTACCAAGCTTTTCCCCACCAGGTCTCACACTGTCGCTGCACAGGGTGGGATCAATGCAGCTCTGGGCAACATGGAGGGTGATGACTGGAGGTGGCATTTCTATGACACAGTtaagggatctgattggctgggagACCAGGACGCTATCCACTACATGACCGAGCAGGCTCCTGCAGCCGTAGTGGAGCTGGAGAACTTTGGCATGCCCTTCAGCCGCACTGAAGATGGGAAGATCTACCAGAGGGCCTTTGGCGGTCAGAGTCTCAAGTTTGGAAAAGGAGGCCAGGCCCACCGCTGCTGCTGCGTAGCAGACAGGACAGGGCACTCACTGCTGCATACACTTTATGGACGGTCGCTTCGTTACGACACCAGTTACTTTGTGGAGTACTTTGCCCTGGACCTGCTGATGGAAAACGGAGAGTGTAAAGGAGTGATCGCTCTCTGCATGGAGGACGGCTCTATTCATCGCTTCAGAGCCCAGAATACGGTCATTGCTACTGGGGGTTATGGAAGAACCTTTTTCAGCTGCACATCTGCCCACACTAGTACAGGAGATGGAAATGCAATGGTAACCAGAGCTGGCCTGCCCTGCCAGGATTTGGAGTTTGTACAGTTCCATCCCACTGGGATCTACGGAGCTGGTTGTCTGATCACAGAGGGTTGCCGTGGTGAGGGAGGGATCCTGATCAACAGTGAGGGCGAGCGCTTCATGGAGCGCTACGCACCCAACGCCAAAGACCTAGCCTCCAGAGACGTGGTGTCCCGCTCCATGACCATAGAGATCAGAGAGGGCAGGGGAGTTGGTCCAGAGAAGGACCACGTGCACCTGCAGCTTCACCACCTGCCTCCCCAGCAGCTGGCCAGCCGGCTGCCCGGTATCTCAGAGACGGCCATGATCTTCGCTGGAGTCGACGTCACTAAAGAGCCCATCCCTGTCCTGCCCACCGTTCACTACAACATGGGGGGAATACCCACAAACTACAAGGGACAGGTGATCACTCATACCAACGGAAACGACAATGTGGTTCCTGGACTGTATGCCTGCGGAGAGTCGGCGTGTGCCAGTGTCCACGGTGCTAACCGGCTGGGCGCTAACTCTCTGCTGGACCTGGTGGTGTTCGGCAGAGCCTGCGCCCTCACCATCGCCGAGGAGCACAAACCTGgAGAGAAACTGTCCCCTCTGGCGCCCAGTGCAGGAGAGGAGTCCGTGGCCAACCTGGACAAGCTGAGGTTTGCCAACGGAAGTCTGAGGACCTCCGAGATCAGGCTCAACATGCAGaagACCATGCAGGCCCACGCTGCAGTGTTCCGTACCGGCCCTGTTTTGAAGGAGGGATGCGAAAAGATGGACGACATTTACCAGACCCTGGGTGACATCAAGACCTTTGACAGAGgcATTGTGTGGAACACAGACCTGGTGGAAAGTCTGGAGCTGCAGAATCTGATGCTGAACGCCGTCCAGACCATCCACGGTGCTgagcagagaaaggagagcaggGGAGCCCACGCCAGAGAGGACTTCAAGGACCGTGTTGATGAGTACGACTACGCAAAGCCCCTGCAGGGTCAGGAGAAGAAGCCCTTCGAGCAGCACTGGAGGAAACACACTATGTCCTACGTCGACCCTAAGACTGGAAAGGTGACCCTGGAGTACCGTCCCGTTATTGACCATTCTCTGGATGAACAGGACTGTGCCCATGTCCCTCCTGCCATCCGCTCCTACTAAGAtctcctttccctctctcccttctcctctCACATTCAAGTCACTCATTTATCTGCTATTTATAAAGATCACTTTCCTGTAATAGACATTTTGAGACAAACTGTGCTTATGGTTGCGCATGTGTATCCATTTAGAACAGTTGAATACAAAACTGTCTTGACTTTAAACTCCATTTGTCTCACCTTCCTGTATTCTGTGTGTTGCCTTGATATAATCTGTGTGCAGCAGATAGATTTCAACACGggtcttgtgtgtgtatatacagtattatgAGGCACTCAAGACAAGTGGGTGACTTTTCAGTCCCTATCTGAAGAACAAAAGCATAGTTAACATGCGGTTCACCGCTTTGCTTTCTGTAATGACACTCTAATTTACAAGTCTTTAATTATAACTTCTCTCCTTTTGCTTTCTGAAGTGAAGAGATGGTAGAAATTATTGCAATTTGAAATAGACTCGTCGCCGACAAGCCACAGCGTGAGgttttaaacatgtaaatattgCAGAAATATACAATAAACATATCTTGTTGAAGCATCA
>XM_039804999.1
CTTATCCTCCACCGTAGCTCAGAATAGGTCCTTCAACTGACAACATGGCGAGTGTCCGGGCTGCCTCCCGTCTCCTCTCTAAGAGGGTATTATCTAAAACTAAATCAGTCCCTGCTGCTGCAGTTCAGGGATCCAGGAATTTTCACTTCTCCATCTATGGCAAGAAAAGTGCCAAAATATCAGATGATATTTCTACTCAGTACCCAGTAGTGGATCATGAATTTGATGCTGTGGTGGTCGGAGCTGGAGGAGCAGGACTTAGGGCAGCCTTTGGCCTGTCCGAGGCTGGCTTCAACACTGCCTGCGTTACCAAGCTTTTCCCCACCAGGTCTCACACTGTCGCTGCACAGGGTGGGATCAATGCAGCTCTGGGCAACATGGAGGGTGATGACTGGAGGTGGCATTTCTATGACACAGTtaagggatctgattggctgggagACCAGGACGCTATCCACTACATGACCGAGCAGGCTCCTGCAGCCGTAGTGGAGCTGGAGAACTTTGGCATGCCCTTCAGCCGCACTGAAGATGGGAAGATCTACCAGAGGGCCTTTGGCGGTCAGAGTCTCAAGTTTGGAAAAGGAGGCCAGGCCCACCGCTGCTGCTGCGTAGCAGACAGGACAGGGCACTCACTGCTGCATACACTTTATGGACGGTCGCTTCGTTACGACACCAGTTACTTTGTGGAGTACTTTGCCCTGGACCTGCTGATGGAAAACGGAGAGTGTAAAGGAGTGATCGCTCTCTGCATGGAGGACGGCTCTATTCATCGCTTCAGAGCCCAGAATACGGTCATTGCTACTGGGGGTTATGGAAGAACCTTTTTCAGCTGCACATCTGCCCACACTAGTACAGGAGATGGAAATGCAATGGTAACCAGAGCTGGCCTGCCCTGCCAGGATTTGGAGTTTGTACAGTTCCATCCCACTGGGATCTACGGAGCTGGTTGTCTGATCACAGAGGGTTGCCGTGGTGAGGGAGGGATCCTGATCAACAGTGAGGGCGAGCGCTTCATGGAGCGCTACGCACCCAACGCCAAAGACCTAGCCTCCAGAGACGTGGTGTCCCGCTCCATGACCATAGAGATCAGAGAGGGCAGGGGAGTTGGTCCAGAGAAGGACCACGTGCACCTGCAGCTTCACCACCTGCCTCCCCAGCAGCTGGCCAGCCGGCTGCCCGGTATCTCAGAGACGGCCATGATCTTCGCTGGAGTCGACGTCACTAAAGAGCCCATCCCTGTCCTGCCCACCGTTCACTACAACATGGGGGGAATACCCACAAACTACAAGGGACAGGTGATCACTCATACCAACGGAAACGACAATGTGGTTCCTGGACTGTATGCCTGCGGAGAGTCGGCGTGTGCCAGTGTCCACGGTGCTAACCGGCTGGGCGCTAACTCTCTGCTGGACCTGGTGGTGTTCGGCAGAGCCTGCGCCCTCACCATCGCCGAGGAGCACAAACCTGgAGAGAAACTGTCCCCTCTGGCGCCCAGTGCAGGAGAGGAGTCCGTGGCCAACCTGGACAAGCTGAGGTTTGCCAACGGAAGTCTGAGGACCTCCGAGATCAGGCTCAACATGCAGaagACCATGCAGGCCCACGCTGCAGTGTTCCGTACCGGCCCTGTTTTGAAGGAGGGATGCGAAAAGATGGACGACATTTACCAGACCCTGGGTGACATCAAGACCTTTGACAGAGgcATTGTGTGGAACACAGACCTGGTGGAAAGTCTGGAGCTGCAGAATCTGATGCTGAACGCCGTCCAGACCATCCACGGTGCTgagcagagaaaggagagcaggGGAGCCCACGCCAGAGAGGACTTCAAGGACCGTGTTGATGAGTACGACTACGCAAAGCCCCTGCAGGGTCAGGAGAAGAAGCCCTTCGAGCAGCACTGGAGGAAACACACTATGTCCTACGTCGACCCTAAGACTGGAAAGGTGACCCTGGAGTACCGTCCCGTTATTGACCATTCTCTGGATGAACAGGACTGTGCCCATGTCCCTCCTGCCATCCGCTCCTACTAAGAtctcctttccctctctcccttctcctctCACATTCAAGTCACTCATTTATCTGCTATTTATAAAGATCACTTTCCTGTAATAGACATTTTGAGACAAACTGTGCTTATGGTTGCGCATGTGTATCCATTTAGAACAGTTGAATACAAAACTGTCTTGACTTTAAACTCCA

Function

symbol description
sdha Predicted to enable electron transfer activity; flavin adenine dinucleotide binding activity; and succinate dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within electron transport chain and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Leigh disease; dilated cardiomyopathy 1GG; mitochondrial complex II deficiency; and paraganglioma. Orthologous to human SDHA (succinate dehydrogenase complex flavoprotein subunit A).

NR:

description
succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0022900 electron transport chain biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804998.1 True 2573 mRNA 0.52 15 12555942 12564798
XM_039804999.1 False 2205 mRNA 0.54 16 12555942 12567664

Neighbor

gene id symbol gene type direction distance location
zmp:0000000930 NA coding upstream 5984 12548020 ~ 12549958 (+)
mrpl32 NA coding upstream 9469 12544496 ~ 12546473 (+)
LOC120561925 NA coding upstream 71030 12478898 ~ 12484912 (+)
tbc1d31 tbc1d31 coding upstream 79378 12465949 ~ 12476564 (+)
LOC120561949 zhx2,LOC104959811 coding upstream 100026 12427541 ~ 12455916 (+)
LOC120561578 NA coding downstream 74275 12641939 ~ 12649833 (+)
hpn hpn coding downstream 91852 12659516 ~ 12676990 (+)
gapdhs gapdhs,LOC106526031,LOC103369915 coding downstream 206217 12773881 ~ 12777726 (+)
LOC120561926 NA coding downstream 212551 12780215 ~ 12782230 (+)
tmem147 tmem147,LOC106605633 coding downstream 216155 12783819 ~ 12788550 (+)
G72018 NA non-coding upstream 15391 12537310 ~ 12540551 (+)
G72006 NA non-coding upstream 35937 12518663 ~ 12520005 (+)
G71989 NA non-coding upstream 68077 12487637 ~ 12487865 (+)
G71987 NA non-coding upstream 69185 12486475 ~ 12486757 (+)
LOC120561687 NA non-coding upstream 184113 12370724 ~ 12371829 (+)
G72028 NA non-coding downstream 26920 12594584 ~ 12596659 (+)
G72036 NA non-coding downstream 71650 12639314 ~ 12639789 (+)
G72117 NA non-coding downstream 210566 12778230 ~ 12778442 (+)
G72129 NA non-coding downstream 248473 12816137 ~ 12820820 (+)
G72134 NA non-coding downstream 258987 12826651 ~ 12883769 (+)
LOC120561922 NA other upstream 845684 11708381 ~ 11710258 (+)
G71896 LOC103388795 other upstream 939700 11599037 ~ 11616242 (+)
mbpb mbp,LOC104918400 other upstream 956716 11537184 ~ 11599226 (+)
depdc1b depdc1b,LOC103388656,LOC101486657 other upstream 1073519 11467345 ~ 11482423 (+)
G71743 NA other upstream 1734442 10820295 ~ 10821500 (+)
LOC120563165 scx other downstream 143938 12711602 ~ 12729226 (+)
LOC120562335 NA other downstream 193153 12760817 ~ 12773439 (+)
G72204 ctnnb1,LOC103388302 other downstream 557270 13124934 ~ 13125897 (+)
hint3 hint3 other downstream 678004 13245668 ~ 13250110 (+)
prelid3a prelid3a other downstream 900547 13468211 ~ 13471516 (+)

Expression


Co-expression Network