cdcp1a


Basic Information

Item Value
gene id cdcp1a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17439093 ~ 17445194 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805007.1
AAAGAGGAAGTGGGGGGGTTGTGTCTCATCAACAACTACGAGCTGAACTTCACGTCAACGAGAGGAAAATGTGGCGCATGAAGGTCGCATGTCTGGACGAGAAGCAATGAAATATGCGCAGATCTCCACTGATTTCCCTCCGGATCAAGTAGAAGTTCACTGTAGCACAGCATGTCCTCATCAAGAGTCACGCTTCATCTTTTACTTCTTACATTCGTCCCCTTCGCTGTCACACTATCAGGGTCGTGTAAAGTGGATCCGAGCAAAATGGAGGGCCTTTCTCTTCACATCAAGAAGTTGAGGCCGGCCTCTGAGTGCAAGATGAAAATAAACTCAGTGTCGAAGGAGAAGATCACAGTCACATCAAGCAGTGAGCTGACTTTTCTGGACTGCCTTCCTGAAGATTTACAAGTCACCGCCACAAAAGTCATAGAGTGTAGTCAACTCAAAGACTGCCAGAAGACTCCGGCCCCTTTGTCGGTGCCCATTTTGCCGACCTGCCTCCCCGCCCCTCTGAGCAATGTGACCTGGACTCTCCGTCCTCCTCAGTCGGGTTCCGTGGAGCTGACCTCTCCCACTGGGCCCCTCAAGCAATCCCTACCTGGGCAGCAATGCAACGACAGCATCATTATCAAAGTGGTCGGAGACGATGGCTCTACTATCGGACACTTCTGCCATCAGGGAGCCATACAGAATGTCCAAATCCACACCAAGGTGTCTGTCACTGTGTCTGGCATGGGGGGTAAAGCACTAACGGGGCCTTTCAAGCATGTGCTGAATGTTGTTTTAAAAGAGGAGATATCGGAAAGATATATATTCACTGTATCTCCAATGAGAGACACTCCTGTCCTTTTGGCTACTCCTGGTTGGCCAATAGGAATGAAGGCTTACTCCACCGTCTCCTGGATCGTTTCTGTTCCCCCGAAGATGGAGGCTCAACTGATGTTTGTCAACCTCAGCCAGCCAAAGTGCAGCAACCGCCACACTGACATCAGGGTGCACAGAGTCGGGTGCCCAGAGGAGGACTACAGCCGCAGGGAGGACGAGGAGGCCAAGAGTGAGATCACCGTCTCCGATAACTTCTACCTCAACATGTCCAACTGTATGCCTGAACGAGGAGACTTCAGGGTCCTCACCAAGATCACCCTGCAGGAGAGCAAGAACTTTCTGCAGACTACAATCCTGAGTGTGGTGTCTGCTCTGTTGGTCATTTTTGCCGTTGTGCTGGTAGTGGTCTGTGTGGTGATTAGgaagaagaagaagaagctgaatcCTGAAGTGTCCATCTACAATCCAAACGGCATCAGCTTCCTGCCAGCACACAACGGCTTCCCCAAAACACGTGAGGACAACGAGTCCCATGTGTACGCCTCCATTGAGGACACGCTGGTCTACACAGACCTGCTGAGACAGGGGGCAGAGATAGGGGTCTACGGAGAGTTTGACACATACCGGCCCTTCACAGGGCAAACAGACTCACATAATCCATTGGTCTCTGAAGACGCTGGTGCAGACAACATGCCAGTCGGGGCTTACCAGCAGTTTCAGGCTCCTCCGCTTCCCATCAGGCCCAAGAGCCACGTCCAACCCCTGGTGGACAATGAGATTTACCAGACTGATAACCAAAGTGAAGAGGAACACTCTCCGGATCTGGGGCCCCGGCTGGAGCCAGAGGGAGGGAACTGAGGAGAAGATAGGATTCAGctttgtgcttttcttttgaCCTACTTGAACTTTGAGATATTCATCCCTGGCATCTTTGTGATTACCAGCCTTGCAAGAagcctttgtttttttctcttgagTGTGGTTTTGTACCCAAGCCAGGCGCACAAAATAACCCTGCTGTTACCTTGTTTTATCTCAGATAAAGGCAGTACATAATCATCCTCTTTATACCAGGCTTGCAATTATAAAGAGATCCTGCAATACTTTTAGGCAACGAAAAAAGAATTTTgtgcttttgtattttttttggacCCATACTTTTATGATACTCAAAACTGGTCTGCTGCTGGTTAAGTGATCTGTTTTTCTGGTCATACAaggacttttttgtttttgttttctatttgtgtttaatgatgaatgaaaaTCACTAGTCAGAGGCCATATTTCCCTATTTGTTTTAAGGACCAGTCCTTATACACTTGATTGCAATCTGTGAGCAAAAAGTTGCTCACCACCAAACAGTATCTTTGTCAGTATCTGTGTTGGTTGACTgaatttaatatattaattattaagaTATTAATAACGGGTAGTTTTTAAAAGAGAGACTATGTGAGGAATGTAATTTAACATAAGATGAGTGTGATGAGTGTTCATGAGTTGTAAAGACAGACTCAGTTGTTTGATGTGGGTCAATAAACCAATCTAAAAGGTACATGGTACAGGTCATGGTACAGACCAACTGTTTTCTAAAATTCAACAGGTTATACATTAACTGGGATAGAAAGCAATAACACAGCATattaaaatctttattttttatctttgatTTTGACATTGGGCTGACCTACATGAACATGCCAGAATATTAACttgaatattaaaatatgattCCAGTTTTACAGTCAAACTGGTGAAAAAGATAGAATAAATTGTGTTGTTTGTTATGTAAAGCCATGTCGCCTCCTGCCGTCCAGAAAGTGAACAGCAGGAGGGGAACACATTTTAGAGTTGCCATAAATTTGTTCTCACTTCAGAGGAAATAAAGTGTCCGCTGTAAAACAA

Function

NR:

description
PREDICTED: CUB domain-containing protein 1-like

GO: NA

KEGG:

id description
ko00511 Other glycan degradation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805007.1 True 2736 mRNA 0.45 6 17439093 17445194

Neighbor

gene id symbol gene type direction distance location
LOC120561781 tmem158,LOC102794155 coding upstream 2289 17435174 ~ 17436804 (+)
mrpl13 mrpl13 coding upstream 276395 17149825 ~ 17162698 (+)
LOC120562784 cpq coding upstream 309480 17109876 ~ 17129613 (+)
LOC120562623 NA coding upstream 331416 17095056 ~ 17107677 (+)
mrs2 mrs2,LOC105917271 coding upstream 345217 17079407 ~ 17093876 (+)
wdtc1 wdtc1,LOC102795681 coding downstream 30374 17475568 ~ 17484853 (+)
LOC120562051 tmem222 coding downstream 40972 17486166 ~ 17489474 (+)
LOC120562050 LOC103366409 coding downstream 44402 17489596 ~ 17491941 (+)
kdf1a kdf1,LOC104937957 coding downstream 47250 17492444 ~ 17497733 (+)
gpatch3 gpatch3 coding downstream 63862 17509056 ~ 17512860 (+)
G73019 NA non-coding upstream 35466 17392268 ~ 17403627 (+)
trnar-acg_16 NA non-coding upstream 70318 17368703 ~ 17368775 (+)
G72862 NA non-coding upstream 373182 17065589 ~ 17065911 (+)
G72879 NA non-coding upstream 447104 16991716 ~ 16991989 (+)
G72859 NA non-coding upstream 476253 16959788 ~ 16962840 (+)
LOC120562054 NA non-coding downstream 55395 17500589 ~ 17504921 (+)
G73186 NA non-coding downstream 478756 17923950 ~ 17926628 (+)
G73216 NA non-coding downstream 669521 18114715 ~ 18116323 (+)
G73230 LOC104960016 non-coding downstream 679800 18124994 ~ 18127318 (+)
G73231 NA non-coding downstream 682229 18127423 ~ 18127887 (+)
G72750 LOC104952694,LOC106925895 other upstream 1366892 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1878801 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2806372 14626478 ~ 14632721 (+)
G72506 NA other upstream 3012913 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 3069002 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 4391 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 11449 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 200319 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 305736 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 953862 18399056 ~ 18420721 (+)

Expression


Co-expression Network