LOC120561791


Basic Information

Item Value
gene id LOC120561791
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21628731 ~ 21638740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805037.1
ACACAACAACCATAAAAACGGTTTGTGCCCCGGTCCACCGACAGCACACTGGCCTCTGTTGGACCAATTAACGGACCCGTCTGTGCACTGCCCCGCCGAGCGTGCTTTCTTGGCCTCTGCTCGTGTTTGGACAGTCAGCAGCGGGACAAAAGTTGAATCAGGACAGGCACTACCAAGTGTAGGCTACAATGGGGTCGTCTGGGGCTCTAGTCTGCGCCGCCGCATTTGTCTTGGTTCTACTCAGCTCAGCATCCAATGATGAGCGCAACTTTGAGCAGCGTGAAGTCACCTTTGACATAATCATGCAAGAAATGCAACAACCAGATATCTTGACGGATCTCTTCGATCCCATGGGGGCTTCCAGACCAGGAGTCTTGACACCTAGAGGaaGTCAACCAAGGTTTTGGCCCCGTTCCTTTGGTGGTCCTCCTAGCCTTGAATATCCTGTTCAGTTCCCCCTTGGCCGACCAACCTCCGACAATCTCCAAGCCATCTGTCTCCATGGAGACCATCGCCCCCGCTACCCAAACTCTTACTTTCCTCCCTCTGGTTTTGGCAAGCAGGTACGAAAAGCCAGTGCTGTTAATATGGCGGAGTCCTGGTTTAGCATGTGCTGCAAAGGGAACCAGACTTGGGAAAGGGAACTGACTCTGTGTTGCGCCACACAGGCGTGGGAGCTGTCAGTCCAATCCTTCTGTGAGGAGGACTCGTCCGTAAAGGATCGTCTTTATcactgctgcagacagatggGCAGGGACAGGCTGAACTGCTTCCACAACGACGCTCCGAACCCAAACTATGAGGCAACAGAGGAGCTGCCGGTGCCGCCGCTTTCCTCTACCACCAACTTCAGCTTCGACCCTAACACTTGCCAGAGGACAGTAATAACTCTGTACCGTACCGGAGAGAATGgaagaaaggagaagaaaaTTGACATCCGCTTTCCTCCCGGACGACCCACCGCTGACGTCATTGAATCACTGTGTCGCGACCAGAAGTTACGCCCCCTCTATAAAGCCAATTGCATGCCAGGTGAAGGGTACAAATGGGTGGCTCGTCAGGCAAAAGCCATTAATCGTATAGAGAAGGGATTCAAACAGTGCTGCAAAAAGAAGCAGGATGTGCTCAACTGTGCTGATCTGAAGTGGCGTGATGAACTTAACAAGTATTGCATGGGCGAGAACGGTGACGTTGTGCATTCCCGCTGTTGTTCCGGTGAATTGGCAAATGATCGATACAGCTGTTTCCAAGACATTTCTCCTGACCCATATTATAATAGGACCTCTGTCGCTGAAGAGCTCTCACTTAACAAACTCTGTGACTATCACAAGATCATCAAAAACAAGTTTCCTGTTGGTTTTCCTCTCAAGAGCTTTGTAGGCCAATGCTGCCATCGCCCGCTTGACGTCGACATGACTATTTGTTTTCTGCAGAGTCTTGACCAAATGTCAGAGACCTGTTCATCAAGGAAGGCCTCCCCTCCAGCTGTCCGTCGCTGTTGCCGCATGTCTTCACCTCAACAGTGTATCTCCAAAATTCTCATGGATGCCATCACTAAAGCAACCGTCTTTAGCCAGAAGAAGAATAAGAAAAGGTGCCCTCTCGCCTAAACACTTATGACCTTTTGCTGCTGACCCTTCTGGCACTAGGCCATTCAGGGAACTGGCAGCAGAGGTGAACAGGAAATGTCGACGTCTGTAAGAAAATGTGGGAATTCTATCTTCATCTACTGCCAGtcttatttgcatttttttttttaactgaaatcACATGAGATGCATTTTTCTGTGTCACTGTACCACTATTTGTTATAGGCTGctgtttacatatttgattATGAATGCattatattgatttatttggagCTGCAAGATCAGTTACCTTCTTTTTATATGGTTTTGTGGTTAAGATCATATCTACAACAGTTGTAATAAAAACGTTTTTAGAGGTT
>XM_039805039.1
GATATTGACCGAATTCAAGCACACTGGCCTCTGTTGGACCAATTAACGGACCCGTCTGTGCACTGCCCCGCCGAGCGTGCTTTCTTGGCCTCTGCTCGTGTTTGGACAGTCAGCAGCGGGACAAAAGTTGAATCAGGACAGGCACTACCAAGTGTAGGCTACAATGGGGTCGTCTGGGGCTCTAGTCTGCGCCGCCGCATTTGTCTTGGTTCTACTCAGCTCAGCATCCAATGATGAGCGCAACTTTGAGCAGCGTGAAGTCACCTTTGACATAATCATGCAAGAAATGCAACAACCAGATATCTTGACGGATCTCTTCGATCCCATGGGGGCTTCCAGACCAGGAGTCTTGACACCTAGAGGaaGTCAACCAAGGTTTTGGCCCCGTTCCTTTGGTGGTCCTCCTAGCCTTGAATATCCTGTTCAGTTCCCCCTTGGCCGACCAACCTCCGACAATCTCCAAGCCATCTGTCTCCATGGAGACCATCGCCCCCGCTACCCAAACTCTTACTTTCCTCCCTCTGGTTTTGGCAAGCAGGTACGAAAAGCCAGTGCTGTTAATATGGCGGAGTCCTGGTTTAGCATGTGCTGCAAAGGGAACCAGACTTGGGAAAGGGAACTGACTCTGTGTTGCGCCACACAGGCGTGGGAGCTGTCAGTCCAATCCTTCTGTGAGGAGGACTCGTCCGTAAAGGATCGTCTTTATcactgctgcagacagatggGCAGGGACAGGCTGAACTGCTTCCACAACGACGCTCCGAACCCAAACTATGAGGCAACAGAGGAGCTGCCGGTGCCGCCGCTTTCCTCTACCACCAACTTCAGCTTCGACCCTAACACTTGCCAGAGGACAGTAATAACTCTGTACCGTACCGGAGAGAATGgaagaaaggagaagaaaaTTGACATCCGCTTTCCTCCCGGACGACCCACCGCTGACGTCATTGAATCACTGTGTCGCGACCAGAAGTTACGCCCCCTCTATAAAGCCAATTGCATGCCAGGTGAAGGGTACAAATGGGTGGCTCGTCAGGCAAAAGCCATTAATCGTATAGAGAAGGGATTCAAACAGTGCTGCAAAAAGAAGCAGGATGTGCTCAACTGTGCTGATCTGAAGTGGCGTGATGAACTTAACAAGTATTGCATGGGCGAGAACGGTGACGTTGTGCATTCCCGCTGTTGTTCCGGTGAATTGGCAAATGATCGATACAGCTGTTTCCAAGACATTTCTCCTGACCCATATTATAATAGGACCTCTGTCGCTGAAGAGCTCTCACTTAACAAACTCTGTGACTATCACAAGATCATCAAAAACAAGTTTCCTGTTGGTTTTCCTCTCAAGAGCTTTGTAGGCCAATGCTGCCATCGCCCGCTTGACGTCGACATGACTATTTGTTTTCTGCAGAGTCTTGACCAAATGTCAGAGACCTGTTCATCAAGGAAGGCCTCCCCTCCAGCTGTCCGTCGCTGTTGCCGCATGTCTTCACCTCAACAGTGTATCTCCAAAATTCTCATGGATGCCATCACTAAAGCAACCGTCTTTAGCCAGAAGAAGAATAAGAAAAGGTGCCCTCTCGCCTAAACACTTATGACCTTTTGCTGCTGACCCTTCTGGCACTAGGCCATTCAGGGAACTGGCAGCAGAGGTGAACAGGAAATGTCGACGTCTGTAAGAAAATGTGGGAATTCTATCTTCATCTACTGCCAGtcttatttgcatttttttttttaactgaaatcACATGAGATGCATTTTTCTGTGTCACTGTACCACTATTTGTTATAGGCTGctgtttacatatttgattATGAATGCattatattgatttatttggagCTGCAAGATCAGTTACCTTCTTTTTATATGGTTTTGTGGTTAAGATCATATCTACAACAGTTGTAATAAAAACGTTTTTAGAGGTT

Function

GO: NA

KEGG:

id description
K23867 ECM1; extracellular matrix protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805037.1 True 1951 mRNA 0.48 10 21629606 21638740
XM_039805039.1 False 1926 mRNA 0.48 11 21628731 21638740

Neighbor

gene id symbol gene type direction distance location
rorc rorc,LOC102786611 coding upstream 1423 21608459 ~ 21627308 (+)
si:dkey-87o1.2 NA coding upstream 31674 21595071 ~ 21597057 (+)
osgin2 osgin2,LOC102787809 coding upstream 58660 21561788 ~ 21570071 (+)
adam22 adam22 coding upstream 72713 21493414 ~ 21556018 (+)
dbf4 NA coding upstream 137180 21485049 ~ 21491551 (+)
LOC120561789 LOC103361609,LOC102785646,LOC102208248,LOC101464829,LOC100701476,LOC103478143,LOC106937891,LOC106916277 coding downstream 352 21639092 ~ 21658530 (+)
LOC120563136 LOC103361607,LOC104959159 coding downstream 22462 21661202 ~ 21667831 (+)
znf687a NA coding downstream 29750 21668490 ~ 21678858 (+)
c7h1orf43 LOC104934460,LOC104959162,LOC103388199 coding downstream 125735 21764475 ~ 21767853 (+)
she LOC101483326,LOC102307252,LOC102202678 coding downstream 166334 21805074 ~ 21818222 (+)
G74288 NA non-coding upstream 336351 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 338417 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 339356 21289171 ~ 21289375 (+)
G74274 kiaa1429,LOC104941925 non-coding upstream 385164 21243229 ~ 21243567 (+)
G74233 NA non-coding upstream 476219 21150389 ~ 21152512 (+)
LOC120562851 NA non-coding downstream 86208 21724948 ~ 21725705 (+)
G74673 NA non-coding downstream 397538 22036278 ~ 22036659 (+)
G74729 NA non-coding downstream 476876 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 480998 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 490912 22129652 ~ 22129914 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 25273 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 212837 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 292066 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 617317 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 1023566 20600323 ~ 20605165 (+)
G74633 tuft1,LOC102781808 other downstream 130808 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 444929 22083669 ~ 22091963 (+)
LOC120561539 NA other downstream 493838 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 498807 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 501040 22139780 ~ 22154684 (+)

Expression


Co-expression Network