rbm42 (rbm42)


Basic Information

Item Value
gene id rbm42
gene name rbm42
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 7767759 ~ 7783482 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805058.1
CCAATAAACCTCAAGAAGAAGCACCCGCCAGTTAGCATAACGTTACAGCTCGTACAGCAGCTAGCTAGAGCATTATTGTTTcctattaaaacatgtttatccATAGAAAGTAACTGGGTTAACTAGCAGTAACATAGAAATCATTACGATAATTCAGCAGCAATTAGCGTCGTTAGCATTAGTGGTTAGTTAGCTGGATGATACAGTAGAGCTAGCTAGGTTCTTGGCTAGCTTAGTTAGCTTCTGATGTGCTAGCTAACGCCACTTAGCTTAGTCGAAAAGCCCAGCGTGTTAGCTAAGTCAACTTAGTCAACAAGCGGTAACTTTTCATATCGAAAGCGTTAACGTCGTAGATTAAGCATGGCGCTCAAGTCCGGACAGGAGCGGCTCAAAGAGATGGAGGCTGAGATGGCTCTTTTTGAGCAGGAGGTTCTTGGCGGTCCAGTACCAGCATCAGGTGGCCCGGCTGTTCTGGAGGCAGGACCTGTAGCTCTTTCTGTCCCGGTGGTTCCAGCAGCGCGAGCCATTATAGGCACCAACACCTACAGACAGGTCCAGCAGACATTAGAAGCCAGAGCTGCTAGTTTTGTTGGTCCTCCACCACCCGTCTTCGCAGGACCAGTCCCTCCAATACGTCCTCCCATGCTGAGACCAGCCTTTGTCCCCCATATCCTGCAGAGACCCGTTGGTCAGAGGATGCCCATGATGCGCGGCCCTCCAATAGCGCCTCCTCTGCCCAggcctcctccccctcctcctatgatgctccctccctccctgcagGCCCAGGCACCCCAGGGTGCTCCTCAGCCCATCCAGCACATGTCTGCTGCACCTCAGGTCCGGGACATGGTCTCCATGGTGTCGTCTCCGCCCACAAGACAGGGTCCCCCGCCTCCCGTCAAACCGACACCGTCGATCATCCAGGCAGCGCCGACCGTGTACTCTGCTCCTCCTGCCCCTGCCGGACATAAAAGGATAGATTTTAGAGCTCAGAGACAAGCCAGAATGGAGGAACTGGCAGCGCGGGTTGCCGAGCAGCAGGCGGCGGTGATGGCGGCAGGTCTGCTGGACAAGAAGGAGAGCGAAGACAGCAGCGCCGTCATTGGACCCAGCATGCCTGAGCCCGAGCCCCCCCACACTGAGCCTGTGGAAAGTGCTACAGAGGACAAAAAGCGATCAAAGTCGGAGAAGGTGAGGAAGTGTATCCGCACTGCAGCAGGGACCAGCTGGGAGGACGCCAGCCTGTTGGAGTGGGATTCAGATGATTTCCGTATATTCTGCGGTGACCTTGGTAACGAGGTGAATGATGACATCctggccagagccttcagcagATACCCGTCTTTCCTCAAAGCAAAGGTGGTGAGAGACAAACGCACGGGGAAGACCAAAGGCTACGGCTTCGTCAGCTTTAAAGATCCCAACGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTACGTCGGCAGTCGTCCCATCAAACTGAGGAAGAGCATGTGGAAGGACCGCAACATGGAAGTGGTCCGCAAGAagcagaaagagaagaagaaactgGGCCTCAGATAGTAAGAGACTGGGTTGTGCTCCCCAGGGGACAGAAAACAACTTTGTGAGAGAGCACGACTCTTATTTTGGGTAGGTCCAATCGGGAGATGTACTGAGATTGTATAggtgttgacttttttttt
>XM_039805059.1
CGGAGGCCGGATCAGGCAGAGCTGGCGCTCCGGCCCCGCCCACACCAGTGACGTCAGCGATAGGCTGTCATGGCGCTCAAGTCCGGACAGGAGCGGCTCAAAGAGATGGAGGCTGAGATGGCTCTTTTTGAGCAGGAGGTTCTTGGCGGTCCAGTACCAGCATCAGGTGGCCCGGCTGTTCTGGAGGCAGGACCTGTAGCTCTTTCTGTCCCGGTGGTTCCAGCAGCGCGAGCCATTATAGGCACCAACACCTACAGACAGGTCCAGCAGACATTAGAAGCCAGAGCTGCTAGTTTTGTTGGTCCTCCACCACCCGTCTTCGCAGGACCAGTCCCTCCAATACGTCCTCCCATGCTGAGACCAGCCTTTGTCCCCCATATCCTGCAGAGACCCGTTGGTCAGAGGATGCCCATGATGCGCGGCCCTCCAATAGCGCCTCCTCTGCCCAggcctcctccccctcctcctatgatgctccctccctccctgcagGCCCAGGCACCCCAGGGTGCTCCTCAGCCCATCCAGCACATGTCTGCTGCACCTCAGGTCCGGGACATGGTCTCCATGGTGTCGTCTCCGCCCACAAGACAGGGTCCCCCGCCTCCCGTCAAACCGACACCGTCGATCATCCAGGCAGCGCCGACCGTGTACTCTGCTCCTCCTGCCCCTGCCGGACATAAAAGGATAGATTTTAGAGCTCAGAGACAAGCCAGAATGGAGGAACTGGCAGCGCGGGTTGCCGAGCAGCAGGCGGCGGTGATGGCGGCAGGTCTGCTGGACAAGAAGGAGAGCGAAGACAGCAGCGCCGTCATTGGACCCAGCATGCCTGAGCCCGAGCCCCCCCACACTGAGCCTGTGGAAAGTGCTACAGAGGACAAAAAGCGATCAAAGTCGGAGAAGGTGAGGAAGTGTATCCGCACTGCAGCAGGGACCAGCTGGGAGGACGCCAGCCTGTTGGAGTGGGATTCAGATGATTTCCGTATATTCTGCGGTGACCTTGGTAACGAGGTGAATGATGACATCctggccagagccttcagcagATACCCGTCTTTCCTCAAAGCAAAGGTGGTGAGAGACAAACGCACGGGGAAGACCAAAGGCTACGGCTTCGTCAGCTTTAAAGATCCCAACGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTACGTCGGCAGTCGTCCCATCAAACTGAGGAAGAGCATGTGGAAGGACCGCAACATGGAAGTGGTCCGCAAGAagcagaaagagaagaagaaactgGGCCTCAGATAGTAAGAGACTGGGTTGTGCTCCCCAGGGGACAGAAAACAACTTTGTGAGAGAGCACGACTCTTATTTTGGGTAGGTCCAATCGGGAGATGTACTGAGATTGTATAggtgttgacttttttttt

Function

symbol description
rbm42 Predicted to enable RNA binding activity. Acts upstream of or within lens development in camera-type eye. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human RBM42 (RNA binding motif protein 42).

NR:

description
PREDICTED: RNA-binding protein 42-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25079 RBM42; RNA-binding protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805058.1 True 1694 mRNA 0.54 12 7769790 7783482
XM_039805059.1 False 1403 mRNA 0.58 12 7767759 7783482

Neighbor

gene id symbol gene type direction distance location
LOC120561799 NA coding upstream 26725 7731826 ~ 7741034 (+)
LOC120561797 NA coding upstream 60168 7665238 ~ 7707591 (+)
fzd1 fzd1,LOC104958298,LOC104925482 coding upstream 469517 7295946 ~ 7298242 (+)
LOC120562880 NA coding upstream 737998 7004604 ~ 7029761 (+)
tsnare1 tsnare1,LOC101472715 coding upstream 962159 6636852 ~ 6805600 (+)
LOC120563115 LOC104936139,LOC100707989,LOC101475232,LOC102313234 coding downstream 102215 7885697 ~ 7904575 (+)
gpd1l gpd1l,LOC103034694,LOC108434205,LOC107600618 coding downstream 246200 8029682 ~ 8046678 (+)
tcaim tcaim coding downstream 264978 8048460 ~ 8059416 (+)
LOC120561723 NA coding downstream 300418 8083900 ~ 8089659 (+)
LOC120561722 NA coding downstream 308170 8091652 ~ 8096292 (+)
G71150 NA non-coding upstream 23758 7742632 ~ 7744001 (+)
LOC120561796 NA non-coding upstream 107674 7656163 ~ 7660085 (+)
G71091 NA non-coding upstream 200345 7567107 ~ 7567414 (+)
G71090 NA non-coding upstream 208360 7542449 ~ 7559399 (+)
LOC120562239 NA non-coding upstream 229517 7537628 ~ 7538242 (+)
G71148 NA non-coding downstream 12859 7796341 ~ 7802015 (+)
G71176 NA non-coding downstream 88035 7871517 ~ 7875600 (+)
G71204 osbpl10 non-coding downstream 189380 7972862 ~ 7980906 (+)
G71200 NA non-coding downstream 263468 8046950 ~ 8047669 (+)
G71211 NA non-coding downstream 265553 8049035 ~ 8059805 (+)
znrf2b znrf2 other upstream 267577 7456767 ~ 7500182 (+)
cdk14 cdk14 other upstream 475324 7039163 ~ 7292435 (+)
G70894 NA other upstream 1806905 5960455 ~ 5960854 (+)
si:ch211-198c19.1 NA other upstream 2172859 5591199 ~ 5594900 (+)
LOC120562244 zdhhc3,LOC103364625,LOC101488043,LOC107102987 other upstream 2300669 5336214 ~ 5467090 (+)
G71309 NA other downstream 338119 8121601 ~ 8122239 (+)
ano10a ano10 other downstream 499898 8283380 ~ 8309744 (+)
G71470 rrp15,LOC106584165,LOC106605018 other downstream 965461 8748943 ~ 8751443 (+)
LOC120561899 LOC104959271 other downstream 976564 8760046 ~ 8776508 (+)
trnay-gua_1 NA other downstream 1026869 8810351 ~ 8810439 (+)

Expression


Co-expression Network