usp5 (usp5,LOC102781302)



Basic Information


Item Value
gene id usp5
gene name usp5,LOC102781302
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24135689 ~ 24151437 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039805087.1
ATTCTACACATTACGGTAACAAGCCGCAGCCACTCGGCGTGCGAGCAACTGAGTTTGTTCCAGGTTTGTTCGGCCTTCCCTCAACACAAGGCAGCGTCTCATGATTCATTCAGCCATACACAGACAGCACTAGACGGGCTAGACAACGGACACTCTTCCGAGCCAGGGAATCATAGGGCTGGGGGTCCAAAGTAAGAGGAGCAAGTGTCCCACTGAAAGGAGGAACTAGCTAGGTAGTCATGGCGGAGGTTGGTGAGGTTTTGATGTCGGTTTTGTCCACGATTCGGGTTCCGAAGCCCGGGGACCGTGTCCACAAAGACGAATGCGCCTTGTCATTTTCCTCGCCGGAAAGTGAAGGAggtctgtatgtgtgcatgaacAGTTTTCTTGGCTTTGGGAGTCAGTATGTGGACAGGTACCATGCCCGGACTGGACAGAGGGCTTACTTGCACATCACCCGGTCTCGCAAGCCTAAGAAGGAAGATGACAGTAACTCTGGCTCTGGACACCCACCTAAGAAAAAGCCCACCAGATTAGCTATAGGGATTGAAGGAGGGTTTGATGTGGAGCAGGAACAGTATGAGGAGGATGTAAAGGTGGTCATTTTACCTGacagacaggaagtgacatcagaGGACCTTGCTACCATGCCTGACGTTGTAAGAGAGCGGGTGTCCCTGTCGATGACGGGTATCATGGCAGCCGACTCAGTGTCTCATGCTTTACAAGTTCAACAGTGGGATGGAGAGGTGAGACAGGAGTCAAGGCATGCCGCTGACCTTAAACAGCTTGACAATGGAGTCAAAATCCCTCCCAGTGGCTGGCGGTGTGAGGTGTGTGACCTCCAGGAGAATATTTGGATGAACCTGACAGACGGAAAATTGCTGTGTGGTCGCAGATATTTTGATGGCTCCGGGGGCAACAACCATGCCCTACTCCACTTCCAGGAGACGGGATACCCAATTGCTGTCAAACTTGGTACCATTACGCCCGATGGAGCAGATGTGTATTCATATGATGAGGATGACATGGTTCTGGATTCCAAGTTACCAGAGCACCTAGCTCATTTTGGCATTAACATGATGACCATGGAGAAGACCGAGCGGACGATGACAGAGCTGGAGATTGCTGTGAACCAGCGTGTGGGGGAGTGGGAGGTGATCCAGGAGTCTGGGACTACCCTACGGCCCCTGTTTGGCTCCGGTTTGACTGGCATGAAGAATCTGGGCAACAGCTGCTACCTCAACTCTGTCATGCAAGTGCTCttcactgttccagacttccagaACAAGTACGTGTCTAACATCGACAAGATCATTGATGAAGCCCCAAGCGACCCCACCCAGGACTTCAAAACCCAAGTCGCCAAGCTCGGCTACGGTCTGTTGTCAGGAGACTATTCCAAACCAGCACCAGACCATGGAGATGAAAATGCTGCGTCTGAACCCAGGGGAGACCAAATCGGTATAGCACCACGAATGTTTAAAGCACTTGTTGGGCGGGGCCACCCTGAGTTCTCCACCAATCGACAACAGGATGCTCAGGAGTTTTTATTGCACTTCATAAACATGGTGGAGAGAAACTGTCGCTCTGCGTCCAACCCATCTGAAGCCTTTAGGTTCCTGGTGGAGGAGAGGATTGTGTGTCAGCAGTCACAGAAAGCCAAGTACACGCAGCGGGTGGATTACATCGTCCAGCTGCCTGTGCCGATGGACCAGGCTACCAACACAGAAGAGCTTCAGGAGGCAGAACGCCGGCGTGAGGAGGGGGACTCATCAGCCCCTACGGTGCGTGCACAAATCCCCTTCACAGCTTGCATGGCGGCCCTCAGTGAACCAGAGATCCTCGCAGACTTCTGGAGCTCGGCTGTGCAGTCCAAGACTACTGCTACCAAAACGACCCGCTTTGCCTCTTTCCCCGACCACCTGGTCATCCAGATTAAGAAGTTCACCTTTGGCCTTGACTGGGTGCCCAAGAAACTGGATGTGAGCATCGACGTTCCTGATACTCTGGACCTGAGCGCGCTAAGGGCAACCGGCCAGCAGCAAGGGGAAGAGCTTCTACCAGAGGTGGCCCCGCCTCCACTCATGACCCCAGATGTGGAGGTTAAAGGTATCCTGGGTTTCCATGGCAACGAGGAGGACGACTCTCTCTACTCCCCACTACTGTCTCCAGTACTTGATGACTCCACTGTGTCCCAGTTATGTGAAATGGGATTCCCACTGGAGGCCTGCCGGAAAGCGGTGTACTACACTGGAAACACTGGAATCGATGCTGCCATGAATTGGATCATGGGCCATATGGATGACCCAGacTTTGGGTCCCCCCTGGTGTTGCCAGGCTGCAGCTCCGGCCCCGGGACCACACCCACAGAGAGCCTCTCTGAGGAGCACCTGGCAACCATCGTCTCCATGGGCTTCAGCCGAGACCAGGCAACCAAAGCACTTCGAGCCACGAGTAATGTCCTAGACCGGGCAGTGGACTGGATCTTCTCCCACCTGGATGACCTTGAGTCCATGGATGTGTCTGAAGGCGGTCGCTCAGCCGCAGAGAGCGAGGGTGGCAGGGATCCTCCACCTGGACCTCGTGTCAGAGACGGACCAGGCAAGTATGAGCTGTTTGCGTTCATCAGTCACATGGGGACGAGCACAATGTGCGGCCACTACGTCTGTCACATCAAGAAGGATCAGcaGTGGGTCATCTTCAACGACCAGAAGGTGTGCGCTTCAGAGAAACCTCCCAAAGACCTGGGATACCTCTACTTCTACAGGAGAGTGGCTGAATAGACAAGGGAGCGTTACACTCAGGGTGAAGGCAGAGTAATGTGGAcgctaacacaaacacacaggacagCATTCATAGTTGCACCCCACCAAGCTCTTACAAATGCCCTGGCATGCTTCACAGCTGATAAAAGTGTAAATAAATCTGTCAGATTGCATATATACACAGTTGAATAAATTGGTGCAGATGTACAGATAAGGTGTAAGGAGATTTTTCCTTTTGGTCCGTTGATTCCAAACCATGGGCCTGTTCAGAGAATCAGATTCAGTTAGTTACCTGGACAACTATGCTGAGTAAAACCATATGAAATATGTTTAAAACACCTGTTCCATGTTTTACTAATTTTACTAGCAAATGGATCCAGATAATTCAGAAAACCTGCTTCAATGAAACCAGCCCCGAACATTCGAGGGTTCCTATGTCCATTCACTCTTCGTGTAACTATCACCCTCATCCATGTCCTGACTATTGATTTCCACTGCCATCAGTAGTCACTGCCCCTTCCCATCAAAATATGTTGCttccagccccccccccccttcttttaTTGGATGGTTGCAGTTTGTTGTCACCCGTTCAGATGTGCACCAACTCCTCCTCCACCAGTTTCAGtgaggaagtaaaaaaaacaacggaTGAACATCCATGAAGAGCGGAAATGTcattgaaacaaacaaatatataaccGCTCAAATGTGTGTgacaaaaaggaaataaaaaaataaaaagt
>XM_039805088.1
TTCTACACATTACGGTAACAAGCCGCAGCCACTCGGCGTGCGAGCAACTGAGTTTGTTCCAGGTTTGTTCGGCCTTCCCTCAACACAAGGCAGCGTCTCATGATTCATTCAGCCATACACAGACAGCACTAGACGGGCTAGACAACGGACACTCTTCCGAGCCAGGGAATCATAGGGCTGGGGGTCCAAAGTAAGAGGAGCAAGTGTCCCACTGAAAGGAGGAACTAGCTAGGTAGTCATGGCGGAGGTTGGTGAGGTTTTGATGTCGGTTTTGTCCACGATTCGGGTTCCGAAGCCCGGGGACCGTGTCCACAAAGACGAATGCGCCTTGTCATTTTCCTCGCCGGAAAGTGAAGGAggtctgtatgtgtgcatgaacAGTTTTCTTGGCTTTGGGAGTCAGTATGTGGACAGGTACCATGCCCGGACTGGACAGAGGGCTTACTTGCACATCACCCGGTCTCGCAAGCCTAAGAAGGAAGATGACAGTAACTCTGGCTCTGGACACCCACCTAAGAAAAAGCCCACCAGATTAGCTATAGGGATTGAAGGAGGGTTTGATGTGGAGCAGGAACAGTATGAGGAGGATGTAAAGGTGGTCATTTTACCTGacagacaggaagtgacatcagaGGACCTTGCTACCATGCCTGACGTTGTAAGAGAGCGGGTGTCCCTGTCGATGACGGGTATCATGGCAGCCGACTCAGTGTCTCATGCTTTACAAGTTCAACAGTGGGATGGAGAGGTGAGACAGGAGTCAAGGCATGCCGCTGACCTTAAACAGCTTGACAATGGAGTCAAAATCCCTCCCAGTGGCTGGCGGTGTGAGGTGTGTGACCTCCAGGAGAATATTTGGATGAACCTGACAGACGGAAAATTGCTGTGTGGTCGCAGATATTTTGATGGCTCCGGGGGCAACAACCATGCCCTACTCCACTTCCAGGAGACGGGATACCCAATTGCTGTCAAACTTGGTACCATTACGCCCGATGGAGCAGATGTGTATTCATATGATGAGGATGACATGGTTCTGGATTCCAAGTTACCAGAGCACCTAGCTCATTTTGGCATTAACATGATGACCATGGAGAAGACCGAGCGGACGATGACAGAGCTGGAGATTGCTGTGAACCAGCGTGTGGGGGAGTGGGAGGTGATCCAGGAGTCTGGGACTACCCTACGGCCCCTGTTTGGCTCCGGTTTGACTGGCATGAAGAATCTGGGCAACAGCTGCTACCTCAACTCTGTCATGCAAGTGCTCttcactgttccagacttccagaACAAGTACGTGTCTAACATCGACAAGATCATTGATGAAGCCCCAAGCGACCCCACCCAGGACTTCAAAACCCAAGTCGCCAAGCTCGGCTACGGTCTGTTGTCAGGAGACTATTCCAAACCAGCACCAGACCATGGAGATGAAAATGCTGCGTCTGAACCCAGGGGAGACCAAATCGGTATAGCACCACGAATGTTTAAAGCACTTGTTGGGCGGGGCCACCCTGAGTTCTCCACCAATCGACAACAGGATGCTCAGGAGTTTTTATTGCACTTCATAAACATGGTGGAGAGAAACTGTCGCTCTGCGTCCAACCCATCTGAAGCCTTTAGGTTCCTGGTGGAGGAGAGGATTGTGTGTCAGCAGTCACAGAAAGCCAAGTACACGCAGCGGGTGGATTACATCGTCCAGCTGCCTGTGCCGATGGACCAGGCTACCAACACAGAAGAGCTTCAGGAGGCAGAACGCCGGCGTGAGGAGGGGGACTCATCAGCCCCTACGGTGCGTGCACAAATCCCCTTCACAGCTTGCATGGCGGCCCTCAGTGAACCAGAGATCCTCGCAGACTTCTGGAGCTCGGCTGTGCAGTCCAAGACTACTGCTACCAAAACGACCCGCTTTGCCTCTTTCCCCGACCACCTGGTCATCCAGATTAAGAAGTTCACCTTTGGCCTTGACTGGGTGCCCAAGAAACTGGATGTGAGCATCGACGTTCCTGATACTCTGGACCTGAGCGCGCTAAGGGCAACCGGCCAGCAGCAAGGGGAAGAGCTTCTACCAGAGGTGGCCCCGCCTCCACTCATGACCCCAGATGTGGAGGTTAAAGCTCCAGTACTTGATGACTCCACTGTGTCCCAGTTATGTGAAATGGGATTCCCACTGGAGGCCTGCCGGAAAGCGGTGTACTACACTGGAAACACTGGAATCGATGCTGCCATGAATTGGATCATGGGCCATATGGATGACCCAGacTTTGGGTCCCCCCTGGTGTTGCCAGGCTGCAGCTCCGGCCCCGGGACCACACCCACAGAGAGCCTCTCTGAGGAGCACCTGGCAACCATCGTCTCCATGGGCTTCAGCCGAGACCAGGCAACCAAAGCACTTCGAGCCACGAGTAATGTCCTAGACCGGGCAGTGGACTGGATCTTCTCCCACCTGGATGACCTTGAGTCCATGGATGTGTCTGAAGGCGGTCGCTCAGCCGCAGAGAGCGAGGGTGGCAGGGATCCTCCACCTGGACCTCGTGTCAGAGACGGACCAGGCAAGTATGAGCTGTTTGCGTTCATCAGTCACATGGGGACGAGCACAATGTGCGGCCACTACGTCTGTCACATCAAGAAGGATCAGcaGTGGGTCATCTTCAACGACCAGAAGGTGTGCGCTTCAGAGAAACCTCCCAAAGACCTGGGATACCTCTACTTCTACAGGAGAGTGGCTGAATAGACAAGGGAGCGTTACACTCAGGGTGAAGGCAGAGTAATGTGGA

Function


symbol description
usp5 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in negative regulation of viral genome replication. Acts upstream of or within cranial skeletal system development and dorsal/ventral pattern formation. Located in cytoplasm. Orthologous to human USP5 (ubiquitin specific peptidase 5).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008242 omega peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039805087.1 True 3514 mRNA 0.51 20 24135689 24151437
XM_039805088.1 False 2771 mRNA 0.54 20 24135690 24150752

Neighbor


gene id symbol gene type direction distance location
cdca3 NA coding upstream 17624 24115503 ~ 24118065 (+)
pex5 pex5,LOC102783438 coding upstream 22477 24099821 ~ 24113212 (+)
clstn3 clstn3,LOC102784285 coding upstream 37570 24074083 ~ 24098119 (+)
LOC120563208 NA coding upstream 81361 24054272 ~ 24054328 (+)
LOC120562699 eno2 coding upstream 109835 24019895 ~ 24025854 (+)
cd4-2.2 NA coding downstream 299 24151736 ~ 24162316 (+)
cd4-1 NA coding downstream 11708 24163145 ~ 24180552 (+)
LOC120561822 NA coding downstream 34214 24185651 ~ 24194012 (+)
cops7a cops7a coding downstream 43012 24194449 ~ 24205673 (+)
znf384b LOC103367544 coding downstream 73716 24225153 ~ 24233422 (+)
G75583 NA non-coding upstream 10608 24122027 ~ 24125081 (+)
G75582 gnb3,LOC103375278 non-coding upstream 13680 24119317 ~ 24122009 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 82733 24048925 ~ 24052956 (+)
G75517 NA non-coding upstream 104350 24027883 ~ 24031339 (+)
G75493 NA non-coding upstream 159955 23972327 ~ 23975734 (+)
G75611 NA non-coding downstream 64703 24216140 ~ 24216569 (+)
G75622 flot1,LOC108235422 non-coding downstream 144401 24295838 ~ 24296723 (+)
LOC120562289 NA non-coding downstream 317397 24468834 ~ 24488842 (+)
G75798 NA non-coding downstream 648804 24800241 ~ 24804853 (+)
G75803 NA non-coding downstream 671589 24823026 ~ 24824765 (+)
lpcat3 lpcat3 other upstream 61991 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 96262 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 256274 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 322281 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 484193 23641555 ~ 23651496 (+)
G75644 NA other downstream 283702 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 369298 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 654852 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 763817 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1222770 25374207 ~ 25380798 (+)

Expression



Co-expression Network