cd4-2.2



Basic Information


Item Value
gene id cd4-2.2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24151736 ~ 24162316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039805090.1
AGTATTCAATATAAGTAATGTCTGTTTTTCACTGCGTACAGAATCCCAGGCCTAGTTTGCGAGAAAGCGCAGGCATGAAGAGCAAACCCACAAACTGCAGGGGTTTGCACCGGCCTACAACTTGGTACACGTTTCTTTTCAGATCTCTTCCGCATTCTACAGGTTTGCATCCTTGTGCTCTTGTTTTCGATGCGGTGAAGCACAAAGAGGATGAGGAAAGATTTTGACTTTCAATAACTTTTTCAAAATTTAAGATCCAACATTCAAAATGAAGACAATCGTGTGGTTTGGTTTTGTGCTGGGTGCACTCTCTGTTGGAGGCGACGTGATCCTCACAAAACCAGGGCAGAGTGCCACCTTCAAGTGTGGGGTCGAGACAAACACTCACAGCCTGGCGTGGAATTATGGAAATGACCTGATTATTAGTTTTGAGGGGAGGGGCTTCCCTCGCAAAGGTGCTAAATTTAGAGACAGGTCGAGGTTAAGGGTTACCAGTCTGGAGATCTCTGGAGTGAGGGAAGACGATGCCGGAGAGTTCATTTGTATGGCAGATGGGAGAAGATATGAACACACACTTCTTGTGGTCTCAGTCTGGGTCAGCCCTTCTAGTGAGCTCCAGCTGGGCAGTGAGGCTACGCTCCAGTGTCGGGTTAAAGGTCTGAACCCCCCGGACTCTCCAGTGAAGTGGAACAGGCCAGATGGAAGTTCACACTCAGAGTCACAGACTGTTCAACTCAAATCTGTAGACCACTCTGATGCAGGGAACTGGAATTGTACGTTCTCCCATGCCGGGAAGAAATACAGTGAGAGCCTAGAAATCAAAGTTCAAGCGCCTGTTCCTGAAACAGCTGCACCATCCCCTTCACCAAGCTCAAAGGACGTCATGCTGGGTGCACTCTCTGTTGGAGGCGACGTGATCCTCACAAAACTAGGGCAGAGTGCCACCTTCAAGTGTGGGGTCGAGACAAACACTCACAGCCTGGCGTGGAATTATGGAAATGACCTGATTATTAGTGTTGATAGGAGTGGCTTCCCTCGCAAAGGTGCTAAATTTAGAGACAGGTCGAGGTTAAGGGTTACCAGTCTGGAGATCTCTGGAGTGAGGGAAGACGATGCCGGAGAGTTCATTTGTACGGCAGATGGGAGAAGATATGAACACACACTTCTTGTGGTCTCAGTCTGGGTCAGCCCTTCTAGTGAGCTCCAGCTGGGCAGTGAGGCTACGCTCCAGTGTCGGGTTAAAGGTCTGAACCCCCCGGACTCTCCAGTGAAGTGGAACAGGCCAGATGGAAGTTCACACTCAGAGTCACAGACTGTTCAACTCAAATCTGTAGCCCGCTCTGATGCAGGGAACTGGAATTGTACGTTCTCCCATGACGGGAAGAAATACAGTGAGAGCCTAGAAATCAAAGTTCAAGCGCCTGTTCCTGAAACAGCTGCACCATCCCCTTCACCAAGCTCAAAGAACGTCATGCTGGGTGCACTCTCTGTTGGAGGCGACGTGATCCTCACAAAACCAGGGCAGAGTGCCACCTTCAAGTGTGGGGTCGAGACAAACACTCACAGCCTGGCGTGGAATTATGGAAATGACCTGATTATTAGTGTTGATGGGAGGGGCTTCCCTCGCAGAGGTGCTAAATTTAGAGACAGGTCGAGGTTAAGGGTTACCAGTCTGGAGATCTCTGGAGTGAGGGAAGACGATGCCGGAGAGTTCATTTGTACGGCAGATGGGAGAAAATATGAACACGCACTTCTTGTGGTCTCAGTCTCAGTCAGCCCTTCTAGTGAGCTCCAGCTGGGCAGTGAGGCTACGCTCCAGTGTCGGGTTAAAGGTCTGAACCCCCCGGACTCTCCAGTGAAGTGGAACAGGCCAGGTGGAAGTTCACACTCAGAGTCACAGACTGTTCAACTCAAATCTGTAGACCACTCTGATGCAGGGAACTGGAATTGTACGTTCTCCCATGACGGGAAGACATACAGTGAGAGCCTAGAAATCAAAGTTCAAGCGCCTGTTCCTGAAACAGCTGCACCATCCCCTTCACCAAGCTCAAAGAACGTCAGCGTTAATCAACATTCAGGCACTGATGCTGTGCTGCTGGGGCTCAGCTGGTGGGTGTGGGTTGCAATTGGAGTAGGCGGCCTGGTCGTGGTTCTCCTGATGGTCTTTGTCATTGTCTTGTGCAAGAAGATCAAAAGAAGGAAGAGAAAATTTCTAAATAAGAAGAATGGCCGACAGCCACTAAAACCCAAGACGTACTGCCAGTGTGACCGcccagcagctgcagcaaaACCGCAGCAAGGACGCAGGAAAGCGAAGCCATCAGCCCTCCCTTTGCAACCCCTGCTAATGGCGTGAGATGAAAGACTGATCCAAGAAAGGAAAaatagacagaaaaaaaagaagagagagagaggaagggaaagaGGAATAGATCAAGATAAAGAGAGCGAGTTAAAGAGAACCCCAGTGTGAATATggaatgaatgtaaatgggCTTTTGAATGCTTGAGATGAAATTTCCACCAAATATAACCAGTGTACTGAATGCAAATAGGCTCCTCCAATGCAAGAGAAAACAGCAACAGTctgtactttttttgacatttatgCAGCATATTAACATGTTAAGAATATCCTTGAATACTGTATTGTCAACCTCTAATGTGCTTTCCATTGTACATTTCATCCAGCTGATtttgatgttttctttcttgtgtttctgtgtatttgACAGATGTCTATGTAGACGTTGTCTTTATTTCTGTAGGCTGTGCATAAAAAGACGATAGTACTGTATTgaagttttgtctttttttccaatAAACTATAAGGATACCCAA

Function


NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05340 Primary immunodeficiency

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039805090.1 True 2841 mRNA 0.48 17 24151736 24162316
Loading

Neighbor


gene id symbol gene type direction distance location
usp5 usp5,LOC102781302 coding upstream 299 24135689 ~ 24151437 (+)
cdca3 NA coding upstream 33671 24115503 ~ 24118065 (+)
pex5 pex5,LOC102783438 coding upstream 38524 24099821 ~ 24113212 (+)
clstn3 clstn3,LOC102784285 coding upstream 53617 24074083 ~ 24098119 (+)
LOC120563208 NA coding upstream 97408 24054272 ~ 24054328 (+)
cd4-1 NA coding downstream 829 24163145 ~ 24180552 (+)
LOC120561822 NA coding downstream 23335 24185651 ~ 24194012 (+)
cops7a cops7a coding downstream 32133 24194449 ~ 24205673 (+)
znf384b LOC103367544 coding downstream 62837 24225153 ~ 24233422 (+)
gnl1 gnl1,LOC102778060 coding downstream 71832 24234148 ~ 24243554 (+)
G75583 NA non-coding upstream 26655 24122027 ~ 24125081 (+)
G75582 gnb3,LOC103375278 non-coding upstream 29727 24119317 ~ 24122009 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 98780 24048925 ~ 24052956 (+)
G75517 NA non-coding upstream 120397 24027883 ~ 24031339 (+)
G75493 NA non-coding upstream 176002 23972327 ~ 23975734 (+)
G75611 NA non-coding downstream 53824 24216140 ~ 24216569 (+)
G75622 flot1,LOC108235422 non-coding downstream 133522 24295838 ~ 24296723 (+)
LOC120562289 NA non-coding downstream 306518 24468834 ~ 24488842 (+)
G75798 NA non-coding downstream 637925 24800241 ~ 24804853 (+)
G75803 NA non-coding downstream 660710 24823026 ~ 24824765 (+)
lpcat3 lpcat3 other upstream 78038 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 112309 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 272321 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 338328 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 500240 23641555 ~ 23651496 (+)
G75644 NA other downstream 272823 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 358419 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 643973 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 752938 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1211891 25374207 ~ 25380798 (+)

Expression


cd4-2.2 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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cd4-2.2 Expression in each Bioproject

Bar chart with 8 bars.
cd4-2.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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Co-expression Network