cd4-1


Basic Information

Item Value
gene id cd4-1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24163145 ~ 24180552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805097.1
TTTCTTCTCATCCAAAAACCCACCACAGGCCGCCTACTCTCACCTCTCTCACCTCTCTTTTATCTTCTCAAATCTCTTCAAATCTACGACCACCACAAACCCCTCTTTGCTTCCTGCTGAATAATGTCTCTTTGCAGCAAAAGTTGATAGACATACAAAATATATGATGAATGTGACTGAAATGAAGAACTTAATTCAATCCGTCCTTCTCCTCGTTGTGCTAATGTCAACAACAGGGGCACAAGAGTTGATATATTATGCTCAGGTGGGAGAGACGCTTACCCTTAAGCCTCCAGGGTCTTTTTCACAAAACTATGTGTACTGGTACTTTGGTGAAATAGAACTTGCCTGGCGCAATACCATGGGAAGAACATGGACTGCTCAAGAATCACGCTGGAAAGACAGGTTGTCCTTGTACTCTGACGACTCACTTATTATCACAAACCTCCAACAAGAAGACTTCTGGACAAAATTTAAATTTCAAGTATCTAGACTACATGGTGACCGTtctgtatatacatataaactACTCAAACTCACTGTGAGTGTGAACCCACCCTCTCCTCTGCTGCCTGGGGATTCCCTGTCTCTGTCCTGCAATGCAGAAACTCAGGGTCTCAAGCCAGAGATACACTGGCTGAATCCCCAAGGAGTTAAAAGGACACTTAAACAACTCCCTGTGAGAGCCACCAGCCAAGACAATGGCCATTGGACTTGTGTTGTGACAAATGCTAAACAAGAGAAAAGAGCCGATGTTCCCATTACGGTTATGGACCTCTCCCCAGCTCCTTTAAGTCCTCTGTATACGTCTAAATCATCTAAGCCTCTCACCGTCCCCTGTTCCATTCCTCCTCACATCTCCTGGGATCAAATCAAAGCTAAGGACATCCAGGAGGTGCACTGGGAATTCATCCCTGAACCAGACTCGAGTCCAGAGAGGCTGTTCAACCTCTCTCTGGAAGATCCACTGACCTGGCagccaaaacaaaacagaggacTGCGTCCTGTAAAAGACCCTAAAGAAATGGATCTGTCTTTGATTAGAAATCAAGGAAGTGAAGATAAAGGAGATTATGTATGCACCCTGAAATTTAAAAATGGTGTGTCTCTGAACAGGACTGTACACGTGAAGGTGCTGCAATTCACCTCCTCCCCAGGAACAGAGTTAATTTCTGGCCAGCAGCTCAACCTGACTTGCAATCTCAGCCATCCGCTGACTTCTGACCTCCGACTCAAATGGGTCCCACCTGAACAAGCATCCCTCTCGTCTTTGTCTCTGGGATCTGACGGTCACCCAACCCATCTCACCATCCCGGAAGTGGGGACAGGAGATGGTGGAAAGTGGAGGTGTGAGCTGTGGCAGAACGTCACACGGCTGACGTCGGCTGAGATAATTCTGAAGATTGAACCCAAACTGAGTGTGTGGATGCTGGTGGTCATATGCAGTGTCACAGTCATCGtaatcctcctcctcatcctcattTTCATCCTCTACCAACAAAGACAACGGAAGATGAGACACCTCGGGCGCCGACTCTGCCAATGCAAAACCCCCAAGCCCAAAGGATTCTACAGAACATAATATGCACCACAAAGACGTTTTCAAGAGGACATCGCAACCAATTCTATTTCTGTCCAGATAAGATGGATATCATATTCCTATCATATCTGAAACTCAGCTAGATGTGTTAGATGAGGGTCTGAACGTTTTAAACGTTTTTTCAGTCCTGACTGTCTTatcacaaaaatgtgttttatagtTGTACATATCAGCCATTTTGGATTGTTTTGTAACGTAAAATCTTAGGGACTTTTCCATTTCACAGAATTGCTCTATGTTCAATTTAATTATCATTTTAACATTATTGTTTGTGATAATTGCTGTTAATAATTGTTTGTGTTATACCTTTTTTCATCCACATTGTTTCTAGTTTTGTCTTGATATGTAATGTATTTTGTATGATGCTCTAAAATACTGCACTGATAGGCTTGGATACTTGCTTTTATAAATATTtacaaatatattatttttaaaatgagcAGCAAATGTTGATACTAAATACACAAATGAGGACACTTCATTAGTTAAATCAAAACTGGACCTTTTTGtcagatattttttatttttgtagatGAATGTAAAGACATTGGCCACTGAAGTTTACCAATAAAGTATCAATATCTTTCATAA
>XM_039805098.1
gaaagAGCCAGCTGAAATGCGTACAGTACCAAATGTCAGAGGTGAACGCATCGCTGCACTGAGAACATCACACACCAATCATTGAGGAGGGAGGTGCAACGCCACTTAAGAAGACAGTTTGTTTGATAAATATTCACCATTTCCACCCGACTCCGGATCACTGAACACAGAGGGACACCTAGCACTCAACAACAGATTGTGACTGAAATGAAGAACTTAATTCAATCCGTCCTTCTCCTCGTTGTGCTAATGTCAACAACAGGGGCACAAGAGTTGATATATTATGCTCAGGTGGGAGAGACGCTTACCCTTAAGCCTCCAGGGTCTTTTTCACAAAACTATGTGTACTGGTACTTTGGTGAAATAGAACTTGCCTGGCGCAATACCATGGGAAGAACATGGACTGCTCAAGAATCACGCTGGAAAGACAGGTTGTCCTTGTACTCTGACGACTCACTTATTATCACAAACCTCCAACAAGAAGACTTCTGGACAAAATTTAAATTTCAAGTATCTAGACTACATGGTGACCGTtctgtatatacatataaactACTCAAACTCACTGTGAGTGTGAACCCACCCTCTCCTCTGCTGCCTGGGGATTCCCTGTCTCTGTCCTGCAATGCAGAAACTCAGGGTCTCAAGCCAGAGATACACTGGCTGAATCCCCAAGGAGTTAAAAGGACACTTAAACAACTCCCTGTGAGAGCCACCAGCCAAGACAATGGCCATTGGACTTGTGTTGTGACAAATGCTAAACAAGAGAAAAGAGCCGATGTTCCCATTACGGTTATGGACCTCTCCCCAGCTCCTTTAAGTCCTCTGTATACGTCTAAATCATCTAAGCCTCTCACCGTCCCCTGTTCCATTCCTCCTCACATCTCCTGGGATCAAATCAAAGCTAAGGACATCCAGGAGGTGCACTGGGAATTCATCCCTGAACCAGACTCGAGTCCAGAGAGGCTGTTCAACCTCTCTCTGGAAGATCCACTGACCTGGCagccaaaacaaaacagaggacTGCGTCCTGTAAAAGACCCTAAAGAAATGGATCTGTCTTTGATTAGAAATCAAGGAAGTGAAGATAAAGGAGATTATGTATGCACCCTGAAATTTAAAAATGGTGTGTCTCTGAACAGGACTGTACACGTGAAGGTGCTGCAATTCACCTCCTCCCCAGGAACAGAGTTAATTTCTGGCCAGCAGCTCAACCTGACTTGCAATCTCAGCCATCCGCTGACTTCTGACCTCCGACTCAAATGGGTCCCACCTGAACAAGCATCCCTCTCGTCTTTGTCTCTGGGATCTGACGGTCACCCAACCCATCTCACCATCCCGGAAGTGGGGACAGGAGATGGTGGAAAGTGGAGGTGTGAGCTGTGGCAGAACGTCACACGGCTGACGTCGGCTGAGATAATTCTGAAGATTGAACCCAAACTGAGTGTGTGGATGCTGGTGGTCATATGCAGTGTCACAGTCATCGtaatcctcctcctcatcctcattTTCATCCTCTACCAACAAAGACAACGGAAGATGAGACACCTCGGGCGCCGACTCTGCCAATGCAAAACCCCCAAGCCCAAAGGATTCTACAGAACATAATATGCACCACAAAGACGTTTTCAAGAGGACATCGCAACCAATTCTATTTCTGTCCAGATAAGATGGATATCATATTCCTATCATATCTGAAACTCAGCTAGATGTGTTAGATGAGGGTCTGAACGTTTTAAACGTTTTTTCAGTCCTGACTGTCTTatcacaaaaatgtgttttatagtTGTACATATCAGCCATTTTGGATTGTTTTGTAACGTAAAATCTTAGGGACTTTTCCATTTCACAGAATTGCTCTATGTTCAATTTAATTATCATTTTAACATTATTGTTTGTGATAATTGCTGTTAATAATTGTTTGTGTTATACCTTTTTTCATCCACATTGTTTCTAGTTTTGTCTTGATATGTAATGTATTTTGTATGATGCTCTAAAATACTGCACTGATAGGCTTGGATACTTGCTTTTATAAATATTtacaaatatattatttttaaaatgagcAGCAAATGTTGATACTAAATACACAAATGAGGACACTTCATTAGTTAAATCAAAACTGGACCTTTTTGtcagatattttttatttttgtagatGAATGTAAAGACATTGGCCACTGAAGTTTACCAATAAAGTATCAATATCTTTCATAA
>XM_039805099.1
gaaagAGCCAGCTGAAATGCGTACAGTACCAAATGTCAGAGGTGAACGCATCGCTGCACTGAGAACATCACACACCAATCATTGAGGAGGGAGGTGCAACGCCACTTAAGAAGACAGTTTGTTTGATAAATATTCACCATTTCCACCCGACTCCGGATCACTGAACACAGAGGGACACCTAGCACTCAACAACAGATtgccGAGAGATCCGTCTTTCGTGGAAcaggggaggaagagagggggtgTGAGAGGCAGAGGTGGAGGATTGGGATAAGAATCTGCACCTTAACTAAATCAAGGCCCACCACAACCTAGCTGTGACTGAAATGAAGAACTTAATTCAATCCGTCCTTCTCCTCGTTGTGCTAATGTCAACAACAGGGGCACAAGAGTTGATATATTATGCTCAGGTGGGAGAGACGCTTACCCTTAAGCCTCCAGGGTCTTTTTCACAAAACTATGTGTACTGGTACTTTGGTGAAATAGAACTTGCCTGGCGCAATACCATGGGAAGAACATGGACTGCTCAAGAATCACGCTGGAAAGACAGGTTGTCCTTGTACTCTGACGACTCACTTATTATCACAAACCTCCAACAAGAAGACTTCTGGACAAAATTTAAATTTCAAGTATCTAGACTACATGGTGACCGTtctgtatatacatataaactACTCAAACTCACTGTGAGTGTGAACCCACCCTCTCCTCTGCTGCCTGGGGATTCCCTGTCTCTGTCCTGCAATGCAGAAACTCAGGGTCTCAAGCCAGAGATACACTGGCTGAATCCCCAAGGAGTTAAAAGGACACTTAAACAACTCCCTGTGAGAGCCACCAGCCAAGACAATGGCCATTGGACTTGTGTTGTGACAAATGCTAAACAAGAGAAAAGAGCCGATGTTCCCATTACGGTTATGGACCTCTCCCCAGCTCCTTTAAGTCCTCTGTATACGTCTAAATCATCTAAGCCTCTCACCGTCCCCTGTTCCATTCCTCCTCACATCTCCTGGGATCAAATCAAAGCTAAGGACATCCAGGAGGTGCACTGGGAATTCATCCCTGAACCAGACTCGAGTCCAGAGAGGCTGTTCAACCTCTCTCTGGAAGATCCACTGACCTGGCagccaaaacaaaacagaggacTGCGTCCTGTAAAAGACCCTAAAGAAATGGATCTGTCTTTGATTAGAAATCAAGGAAGTGAAGATAAAGGAGATTATGTATGCACCCTGAAATTTAAAAATGGTGTGTCTCTGAACAGGACTGTACACGTGAAGGTGCTGCAATTCACCTCCTCCCCAGGAACAGAGTTAATTTCTGGCCAGCAGCTCAACCTGACTTGCAATCTCAGCCATCCGCTGACTTCTGACCTCCGACTCAAATGGGTCCCACCTGAACAAGCATCCCTCTCGTCTTTGTCTCTGGGATCTGACGGTCACCCAACCCATCTCACCATCCCGGAAGTGGGGACAGGAGATGGTGGAAAGTGGAGGTGTGAGCTGTGGCAGAACGTCACACGGCTGACGTCGGCTGAGATAATTCTGAAGATTGAACCCAAACTGAGTGTGTGGATGCTGGTGGTCATATGCAGTGTCACAGTCATCGtaatcctcctcctcatcctcattTTCATCCTCTACCAACAAAGACAACGGAAGATGAGACACCTCGGGCGCCGACTCTGCCAATGCAAAACCCCCAAGCCCAAAGGATTCTACAGAACATAATATGCACCACAAAGACGTTTTCAAGAGGACATCGCAACCAATTCTATTTCTGTCCAGATAAGATGGATATCATATTCCTATCATATCTGAAACTCAGCTAGATGTGTTAGATGAGGGTCTGAACGTTTTAAACGTTTTTTCAGTCCTGACTGTCTTatcacaaaaatgtgttttatagtTGTACATATCAGCCATTTTGGATTGTTTTGTAACGTAAAATCTTAGGGACTTTTCCATTTCACAGAATTGCTCTATGTTCAATTTAATTATCATTTTAACATTATTGTTTGTGATAATTGCTGTTAATAATTGTTTGTGTTATACCTTTTTTCATCCACATTGTTTCTAGTTTTGTCTTGATATGTAATGTATTTTGTATGATGCTCTAAAATACTGCACTGATAGGCTTGGATACTTGCTTTTATAAATATTtacaaatatattatttttaaaatgagcAGCAAATGTTGATACTAAATACACAAATGAGGACACTTCATTAGTTAAATCAAAACTGGACCTTTTTGtcagatattttttatttttgtagatGAATGTAAAGACATTGGCCACTGAAGTTTACCAATAAAGTATCAATATCTTTCATAA
>XM_039805100.1
gaaagAGCCAGCTGAAATGCGTACAGTACCAAATGTCAGAGGTGAACGCATCGCTGCACTGAGAACATCACACACCAATCATTGAGGAGGGAGGTGCAACGCCACTTAAGAAGACAGTTTGTTTGATAAATATTCACCATTTCCACCCGACTCCGGATCACTGAACACAGAGGGACACCTAGCACTCAACAACAGATATGTGATCGTCTTGGTTTCTGGGTTGCAGCTCCACAGGTGCTGTGACTTTtgccGAGAGATCCGTCTTTCGTGGAAcaggggaggaagagagggggtgTGAGAGGCAGAGGTGGAGGATTGGGATAAGAATCTGCACCTTAACTAAATCAAGGCCCACCACAACCTAGCTGTGACTGAAATGAAGAACTTAATTCAATCCGTCCTTCTCCTCGTTGTGCTAATGTCAACAACAGGGGCACAAGAGTTGATATATTATGCTCAGGTGGGAGAGACGCTTACCCTTAAGCCTCCAGGGTCTTTTTCACAAAACTATGTGTACTGGTACTTTGGTGAAATAGAACTTGCCTGGCGCAATACCATGGGAAGAACATGGACTGCTCAAGAATCACGCTGGAAAGACAGGTTGTCCTTGTACTCTGACGACTCACTTATTATCACAAACCTCCAACAAGAAGACTTCTGGACAAAATTTAAATTTCAAGTATCTAGACTACATGGTGACCGTtctgtatatacatataaactACTCAAACTCACTGTGAGTGTGAACCCACCCTCTCCTCTGCTGCCTGGGGATTCCCTGTCTCTGTCCTGCAATGCAGAAACTCAGGGTCTCAAGCCAGAGATACACTGGCTGAATCCCCAAGGAGTTAAAAGGACACTTAAACAACTCCCTGTGAGAGCCACCAGCCAAGACAATGGCCATTGGACTTGTGTTGTGACAAATGCTAAACAAGAGAAAAGAGCCGATGTTCCCATTACGGTTATGGACCTCTCCCCAGCTCCTTTAAGTCCTCTGTATACGTCTAAATCATCTAAGCCTCTCACCGTCCCCTGTTCCATTCCTCCTCACATCTCCTGGGATCAAATCAAAGCTAAGGACATCCAGGAGGTGCACTGGGAATTCATCCCTGAACCAGACTCGAGTCCAGAGAGGCTGTTCAACCTCTCTCTGGAAGATCCACTGACCTGGCagccaaaacaaaacagaggacTGCGTCCTGTAAAAGACCCTAAAGAAATGGATCTGTCTTTGATTAGAAATCAAGGAAGTGAAGATAAAGGAGATTATGTATGCACCCTGAAATTTAAAAATGGTGTGTCTCTGAACAGGACTGTACACGTGAAGGTGCTGCAATTCACCTCCTCCCCAGGAACAGAGTTAATTTCTGGCCAGCAGCTCAACCTGACTTGCAATCTCAGCCATCCGCTGACTTCTGACCTCCGACTCAAATGGGTCCCACCTGAACAAGCATCCCTCTCGTCTTTGTCTCTGGGATCTGACGGTCACCCAACCCATCTCACCATCCCGGAAGTGGGGACAGGAGATGGTGGAAAGTGGAGGTGTGAGCTGTGGCAGAACGTCACACGGCTGACGTCGGCTGAGATAATTCTGAAGATTGAACCCAAACTGAGTGTGTGGATGCTGGTGGTCATATGCAGTGTCACAGTCATCGtaatcctcctcctcatcctcattTTCATCCTCTACCAACAAAGACAACGGAAGATGAGACACCTCGGGCGCCGACTCTGCCAATGCAAAACCCCCAAGCCCAAAGGATTCTACAGAACATAATATGCACCACAAAGACGTTTTCAAGAGGACATCGCAACCAATTCTATTTCTGTCCAGATAAGATGGATATCATATTCCTATCATATCTGAAACTCAGCTAGATGTGTTAGATGAGGGTCTGAACGTTTTAAACGTTTTTTCAGTCCTGACTGTCTTatcacaaaaatgtgttttatagtTGTACATATCAGCCATTTTGGATTGTTTTGTAACGTAAAATCTTAGGGACTTTTCCATTTCACAGAATTGCTCTATGTTCAATTTAATTATCATTTTAACATTATTGTTTGTGATAATTGCTGTTAATAATTGTTTGTGTTATACCTTTTTTCATCCACATTGTTTCTAGTTTTGTCTTGATATGTAATGTATTTTGTATGATGCTCTAAAATACTGCACTGATAGGCTTGGATACTTGCTTTTATAAATATTtacaaatatattatttttaaaatgagcAGCAAATGTTGATACTAAATACACAAATGAGGACACTTCATTAGTTAAATCAAAACTGGACCTTTTTGtcagatattttttatttttgtagatGAATGTAAAGACATTGGCCACTGAAGTTTACCAATAAAGTATCAATATCTTTCATAA

Function

NR:

description
CD4 isoform X1

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805097.1 False 2191 mRNA 0.42 10 24175625 24180552
XM_039805098.1 False 2217 mRNA 0.42 11 24163145 24180552
XM_039805099.1 False 2336 mRNA 0.43 12 24163145 24180552
XM_039805100.1 True 2386 mRNA 0.43 13 24163145 24180552

Neighbor

gene id symbol gene type direction distance location
cd4-2.2 NA coding upstream 829 24151736 ~ 24162316 (+)
usp5 usp5,LOC102781302 coding upstream 11708 24135689 ~ 24151437 (+)
cdca3 NA coding upstream 45080 24115503 ~ 24118065 (+)
pex5 pex5,LOC102783438 coding upstream 49933 24099821 ~ 24113212 (+)
clstn3 clstn3,LOC102784285 coding upstream 65026 24074083 ~ 24098119 (+)
LOC120561822 NA coding downstream 5099 24185651 ~ 24194012 (+)
cops7a cops7a coding downstream 13897 24194449 ~ 24205673 (+)
znf384b LOC103367544 coding downstream 44601 24225153 ~ 24233422 (+)
gnl1 gnl1,LOC102778060 coding downstream 53596 24234148 ~ 24243554 (+)
ddr1 ddr1 coding downstream 72651 24253203 ~ 24292486 (+)
G75583 NA non-coding upstream 38064 24122027 ~ 24125081 (+)
G75582 gnb3,LOC103375278 non-coding upstream 41136 24119317 ~ 24122009 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 110189 24048925 ~ 24052956 (+)
G75517 NA non-coding upstream 131806 24027883 ~ 24031339 (+)
G75493 NA non-coding upstream 187411 23972327 ~ 23975734 (+)
G75611 NA non-coding downstream 35588 24216140 ~ 24216569 (+)
G75622 flot1,LOC108235422 non-coding downstream 115286 24295838 ~ 24296723 (+)
LOC120562289 NA non-coding downstream 288282 24468834 ~ 24488842 (+)
G75798 NA non-coding downstream 619689 24800241 ~ 24804853 (+)
G75803 NA non-coding downstream 642474 24823026 ~ 24824765 (+)
lpcat3 lpcat3 other upstream 89447 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 123718 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 283730 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 349737 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 511649 23641555 ~ 23651496 (+)
G75644 NA other downstream 254587 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 340183 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 625737 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 734702 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1193655 25374207 ~ 25380798 (+)

Expression


Co-expression Network