LOC120561822


Basic Information

Item Value
gene id LOC120561822
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24185651 ~ 24194012 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805102.1
TGAGGAAAGAACCTCCCACTTTGGATTAACAGAATGTCCTCTTTTTCCAAAAAACAAGCTGGACTTATTTTGTTGTAGGTACAGGACAGTttaactgagcacatttgttacaGCACTGCAGCAGTGCTGTAGGCAGGGGGACGTGCCTTGATACATCAACCAGCAGGGACAAATTTAATTTCAAGGAGAAATATTGCTGCTTGGGAGAGGAGATACCAAAGCCTTTAGGGCCCAGAGGAGATACAGTACAAAGAGACAAAGTGAGACAGAAGTGTTAACAAGGGCTTCACAGccatggaggagagagaaaactaCAGCAGCCTGCAGGAGTTCACTGAGGAGCCGACACCTGGAGGGAACAGGCTCATTCTTGAACACGATGACGGCTCACAGGGACTGAAGCGGGGGGTTGAGTGTTTGCGGAGTCAGACTTCTCTCCTGATACTTATTGGCTTTTTGGCCTCCATCTGCGCCAACATCGTACTCACTGTGCTCTTGATTAGCAGGCCGGTGCAAGGTGCCCCCCTGGACTCCCCATCTCTAGGCTTCAAACTGAACTCGATGCAGAGACGTTACATCCAGCTGTGTGAGAACTACACCGCCCTGGGACAGAGCTGTTCAAAGACAGTTAAGCAGTGCTCAGAGTGTCCTGACGGATGGCGTCAAGTCGGGGATCAGTGTTACCACTTCAGCAGTAACAAGCTGGACTGGCTGAAGAGCAGAGATAGCTGTGCAGAGATGGGCAGCCATCTTGCCATACTGCACACCATGGAACAGCATGACGAACTGGAAAAAGAAGCCAGGAGAGTTGGCGGATTTGATTACCACTTCTGGATTGGCCTGTCTGATATAGAGAAGGAAGGAGACTGGAGATGGGTGGACAACACAACATTGCAACACAACTACTGGGATCAGTTGAGCTCAGAGCCAAATAACCACCAGTCAGGAGGAGCACATGGAGAGGACTGTGCCACCTTAGACAGCCACGCAAAGACATGGTTTGATGTTCCTTGTGAACACATTTATAAACGGATCTGCCAAATGGATGCCATTCAGCTCAACTGAATCCCCATACAACTGAAAATTCTGCACAACTGGGAAGTCTGGAAACTCTGTACATTGTGTTGATTGCTGTTCTACTGCAGTCTTTTTTTCAAgtaaatctaaaacaaaaagcaTGACATTAAAAGTGAACATACATTGTAGTATTGCACTAATTTTAGATAGAGAAGGAAatcaatatttaaataaataaaattaatgacTTTGATAGACAATGACATAAGGTTACAGTTTTTGGAGTGTGTCCACTTACAATGAATGGGCCTATTATTAAATGTAGTTAGATAGATATTTTACCTGAATGACTTTTATTTGAATGTCAGGTCATCCAGGTCTGACATTAGAAAAAGGTCTTTatattgaaaagttgaatgccACAAATACTGTGCTTACTACATGTGTGAAGTTTGGGCATGATTATTGTCTGTCTCTGCTGTTCATATTTGGTAGAGATTTGTGCAAATTCACAACTTAAAACTGAGCTGCAAATTATTTCAGAAATAACATTGTAGATTTTATTTTAGGTTGCTATACCTTTCATTAATCTTGTTGTACCCTTGCACTATGTCGGGCTTTCAAGACTAAATGTATGCCAATAAAATTGTCTTTTTTC
>XM_039805103.1
AACTGAGGAAAGAACCTCCCACTTTGGATTAACAGAATGTCCTCTTTTTCCAAAAAACAAGCTGGACTTATTTTGTTGTAGGTACAGGACAGTttaactgagcacatttgttacaGCACTGCAGCAGTGCTGTAGGCAGGGGGACGTGCCTTGATACATCAACCAGCAGGGACAAATTTAATTTCAAGGAGAAATATTGCTGCTTGGGAGAGGAGATACCAAAGCCTTTAGGGCCCAGAGGAGATACAGTACAAAGAGACAAAGTGAGACAGAAGTGTTAACAAGGGCTTCACAGccatggaggagagagaaaactaCAGCAGCCTGCAGGAGTTCACTGAGGAGCCGACACCTGGAGGGAACAGGCTCATTCTTGAACACGATGACGTGATTAGCAGGCCGGTGCAAGGTGCCCCCCTGGACTCCCCATCTCTAGGCTTCAAACTGAACTCGATGCAGAGACGTTACATCCAGCTGTGTGAGAACTACACCGCCCTGGGACAGAGCTGTTCAAAGACAGTTAAGCAGTGCTCAGAGTGTCCTGACGGATGGCGTCAAGTCGGGGATCAGTGTTACCACTTCAGCAGTAACAAGCTGGACTGGCTGAAGAGCAGAGATAGCTGTGCAGAGATGGGCAGCCATCTTGCCATACTGCACACCATGGAACAGCATGACGAACTGGAAAAAGAAGCCAGGAGAGTTGGCGGATTTGATTACCACTTCTGGATTGGCCTGTCTGATATAGAGAAGGAAGGAGACTGGAGATGGGTGGACAACACAACATTGCAACACAACTACTGGGATCAGTTGAGCTCAGAGCCAAATAACCACCAGTCAGGAGGAGCACATGGAGAGGACTGTGCCACCTTAGACAGCCACGCAAAGACATGGTTTGATGTTCCTTGTGAACACATTTATAAACGGATCTGCCAAATGGATGCCATTCAGCTCAACTGAATCCCCATACAACTGAAAATTCTGCACAACTGGGAAGTCTGGAAACTCTGTACATTGTGTTGATTGCTGTTCTACTGCAGTCTTTTTTTCAAgtaaatctaaaacaaaaagcaTGACATTAAAAGTGAACATACATTGTAGTATTGCACTAATTTTAGATAGAGAAGGAAatcaatatttaaataaataaaattaatgacTTTGATAGACAATGACATAAGGTTACAGTTTTTGGAGTGTGTCCACTTACAATGAATGGGCCTATTATTAAATGTAGTTAGATAGATATTTTACCTGAATGACTTTTATTTGAATGTCAGGTCATCCAGGTCTGACATTAGAAAAAGGTCTTTatattgaaaagttgaatgccACAAATACTGTGCTTACTACATGTGTGAAGTTTGGGCATGATTATTGTCTGTCTCTGCTGTTCATATTTGGTAGAGATTTGTGCAAATTCACAACTTAAAACTGAGCTGCAAATTATTTCAGAAATAACATTGTAGATTTTATTTTAGGTTGCTATACCTTTCATTAATCTTGTTGTACCCTTGCACTATGTCGGGCTTTCAAGACTAAATGTATGCCAATAAAATTGTCTTTTTTC
>XM_039805104.1
ACTGAGGAAAGAACCTCCCACTTTGGATTAACAGAATGTCCTCTTTTTCCAAAAAACAAGCTGGACTTATTTTGTTGTAGGTACAGGACAGTttaactgagcacatttgttacaGCACTGCAGCAGTGCTGTAGGCAGGGGGACGTGCCTTGATACATCAACCAGCAGGGACAAATTTAATTTCAAGGAGAAATATTGCTGCTTGGGAGAGGAGATACCAAAGCCTTTAGGGCCCAGAGGAGATACAGTACAAAGAGACAAAGTGAGACAGAAGTGTTAACAAGGGCTTCACAGccatggaggagagagaaaactaCAGCAGCCTGCAGGAGTTCACTGAGGAGCCGACACCTGGAGGGAACAGGCTCATTCTTGAACACGATGACGGCTCACAGGGACTGAAGCGGGGGGTTGAGTGTTTGCGGAGTCAGACTTCTCTCCTGATACTTATTGGCTTTTTGGCCTCCATCTGCGCCAACATCGTACTCACTGTGCTCTTGATTAGCAGGCCGGTGCAAGGTGCCCCCCTGGACTCCCCATCTCTAGGCTTCAAACTGAACTCGATGCAGAGACGTTACATCCAGCTGTGTGAGAACTACACCGCCCTGGGACAGAGCTGTTCAAAGACAGTTAAGCAGTGCTCAGAGTGTCCTGACGGATGGCGTCAAGTCGGGGATCAGTGTTACCACTTCAGCAGTAACAAGCTGGACTGGCTGAAGAGCAGAGATAGCTGTGCAGAGATGGGCAGCCATCTTGCCATACTGCACACCATGGAACAGCATGACGAACTGGAAAAAGAAGCCAGGAGAGTTGGCGGATTTGATTACCACTTCTGGATTGGCCTGTCTGATATAGAGAAGGAAGGAGACTGGAGATGGGTGGACAACACAACTACTGGGATCAGTTGAGCTCAGAGCCAAATAACCACCAGTCAGGAGGAGCACATGGAGAGGACTGTGCCACCTTAGACAGCCACGCAAAGACATGGTTTGATGTTCCTTGTGAACACATTTATAAACGGATCTGCCAAATGGATGCCATTCAGCTCAACTGAAT

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805102.1 True 1675 mRNA 0.43 6 24185654 24194012
XM_039805103.1 False 1567 mRNA 0.42 5 24185651 24194012
XM_039805104.1 False 1056 mRNA 0.49 6 24185652 24193404

Neighbor

gene id symbol gene type direction distance location
cd4-1 NA coding upstream 5099 24163145 ~ 24180552 (+)
cd4-2.2 NA coding upstream 23335 24151736 ~ 24162316 (+)
usp5 usp5,LOC102781302 coding upstream 34214 24135689 ~ 24151437 (+)
cdca3 NA coding upstream 67586 24115503 ~ 24118065 (+)
pex5 pex5,LOC102783438 coding upstream 72439 24099821 ~ 24113212 (+)
cops7a cops7a coding downstream 437 24194449 ~ 24205673 (+)
znf384b LOC103367544 coding downstream 31141 24225153 ~ 24233422 (+)
gnl1 gnl1,LOC102778060 coding downstream 40136 24234148 ~ 24243554 (+)
ddr1 ddr1 coding downstream 59191 24253203 ~ 24292486 (+)
tubb5 tubb,tubb5,LOC102780606,LOC108432309 coding downstream 108826 24302838 ~ 24307580 (+)
G75583 NA non-coding upstream 60570 24122027 ~ 24125081 (+)
G75582 gnb3,LOC103375278 non-coding upstream 63642 24119317 ~ 24122009 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 132695 24048925 ~ 24052956 (+)
G75517 NA non-coding upstream 154312 24027883 ~ 24031339 (+)
G75493 NA non-coding upstream 209917 23972327 ~ 23975734 (+)
G75611 NA non-coding downstream 22128 24216140 ~ 24216569 (+)
G75622 flot1,LOC108235422 non-coding downstream 101826 24295838 ~ 24296723 (+)
LOC120562289 NA non-coding downstream 274822 24468834 ~ 24488842 (+)
G75798 NA non-coding downstream 606229 24800241 ~ 24804853 (+)
G75803 NA non-coding downstream 629014 24823026 ~ 24824765 (+)
lpcat3 lpcat3 other upstream 111953 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 146224 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 306236 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 372243 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 534155 23641555 ~ 23651496 (+)
G75644 NA other downstream 241127 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 326723 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 612277 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 721242 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1180195 25374207 ~ 25380798 (+)

Expression


Co-expression Network