XLOC_004635


Basic Information

Item Value
gene id XLOC_004635
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18209871 ~ 18228004 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010914
ccgcccacacatggcgacaagcagaggacactttaCAGTTTACACTCTACTAGCTTTtgagtcaagaatgtagttgtttagattgcaacaatacagtttattttaaggatagtgcctattttaaaatagtttttataatttttttatatttttaaagatataacTTCGGAGCATCGAATTCAGTGCATCGGCCATCATCAGCCtgagcagacaaaaaaaaaaaagtgacagttgacgttccgccacaagacGGCGACAGAGGCTGCATAAGAAGTTCTTTGGTGAAGCAGTCTCCGGAGCCTACACTGGCCCAGGGTTCTGATGCTGGAGGCAACACTGGGCTGGCATTCTAGGGCTGGAGCCATCACTGGTCCTGTGCTCTGAGGCTGGAGTTCTCGCTGGACTGCTCTCATGGATCTCGTGGGCTTATGAGAACACTCGGAACTGGAGTTTTTGTCCCAAGCATAAAGCAGCATTTGATGGACTGTGAGAGTCTCTGACGCAGCGAAGAGCCTTGAAAACATTTAGAGGACTCATCATGAAATTCTGCACTTGATGGAGTAATATTCTGCATGGGGATTAGATCCATGTTGGAAATTTAGAACTTTAACACACGTAAACCGAAAGAGCTTGAAAAAACAACCAGCCACAATTTCTTCTTCCTTCACACCACTGTTCTAAAGTTGACACGTTTACTGTTCTAAAGTTGACACCCTCACCTGCTAAAGAATTctactgttgccatgacaactgAAGCTATACTGCACAGTCAAATTGCGATTCCATAGAGCATATTCAATTGTGTCAATAAAAAATCTTCTGATTTTAATGAGAAAATTTTaccaaatgtttttaaatttcaaCTTTCCCTGTAGGCCTACCTTCTTATAGTGTAATAACATGTAAAAGTTATTTCCACTGATTTTTGAAAAATGGTTTAATATTAACATCAGACCAGTGGAGGGACTCAACATGTATCAAAACTCTGGTTtggaaatatgaataaatacatactgtatgctttgtatatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010914 True 1031 lncRNA 0.40 3 18209871 18228004

Neighbor

gene id symbol gene type direction distance location
XLOC_004634 BX005075.1 coding upstream 84097 18125658 ~ 18125774 (+)
XLOC_004633 trrap coding upstream 104755 17927871 ~ 18105116 (+)
XLOC_004632 tmem130 coding upstream 334601 17865374 ~ 17875270 (+)
XLOC_004631 bhlha15 coding upstream 452966 17754859 ~ 17756905 (+)
XLOC_004630 CR932017.1 coding upstream 470415 17701625 ~ 17739456 (+)
XLOC_004636 fam20cb coding downstream 6553 18234557 ~ 18343653 (+)
XLOC_004637 FOXL3 coding downstream 130078 18358082 ~ 18362422 (+)
XLOC_004638 noxo1b coding downstream 217600 18445604 ~ 18454422 (+)
XLOC_004639 rnf151 coding downstream 230498 18458502 ~ 18464975 (+)
XLOC_004640 neurl2 coding downstream 296949 18524953 ~ 18527221 (+)
XLOC_004625 NA non-coding upstream 782491 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 non-coding upstream 864204 17345550 ~ 17345667 (+)
XLOC_004618 dre-mir-107a non-coding upstream 1249090 16960693 ~ 16960781 (+)
XLOC_004615 NA non-coding upstream 1335168 16742395 ~ 16874703 (+)
XLOC_004644 AL772266.2 non-coding downstream 370846 18598850 ~ 18598964 (+)
XLOC_004648 NA non-coding downstream 633274 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 1039755 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 1160139 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 1230805 19458809 ~ 19459285 (+)

Expression


Co-expression Network