dap3 (dap3)


Basic Information

Item Value
gene id dap3
gene name dap3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22332416 ~ 22338933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805188.1
TGCGTCACTTCCTGTTCAAAGCTACATGATGGCGGTGTCCATGACAGCACTGGCACATTGACTTCGCCTGGAGTTGTGCAGCTCACCCTCTCCATAAACTACTCTGGGGACATTTGTCAGTAGATGACCTTAAGCGAAACCATTGTCACTGAATATTTAATGAACTGAATCGCAGATCATGGCGCTCCACAGACTGTCCTTCAGGCTTCGGCAAACGGTAACGCATGTAAGGCCCCTTCATACCAGTGGATGTgggcaacaacagcagcaacagcagcaggatGCTGTGGCTGTGGAGTCAGAACCTGAGCCCTTCTCAGTTTTCAGAGCACAGGAGAATGATCCGGCATGTCAGTCAGAGAAACATATCGGACAGTATTACACCCTGCCGTCTGCACACCTCCGCACTCTGTTCCCTCACAGCCTCCCTTGGCGCTATCAACAACAGGTGAAGACGTTTAACGAAGCCTGTGTGATGGTGAGGCAGCCAGCTCTAGAGGTCATATCTTACCTGAAGAAAACCGACTACAGCAAGCCTTCTCTGCGATATTTATTCTATGGGTTGAAGGGCAGCGGGAAGACAatgtctctctgtcacacagTCCACTTCTGCTACACACAAGGATGGCTGGTGTTGCATGTTCCTGATGCTCACCTCTGGGTGAAAAACTGTAAAGAGCTGCTGCCCTCATCTTATAACACCTCTCGCTTTGATCAGCCGTTACAAGCCACTGACTGGTTACGCAACTTCAGAATCACCAATGAGCACTTCCTTTCAAAGATAAAGACAAAGCAGCGCTATGTGTGGACAAAGAGAGAGTTCACTGAGCAGGGAAGTCCACTAGGAGAGCTGGTGGATCAGGGTATATCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCGGTGATGAAGGAGCTAAGGCTGCAGAGTGGGCAGCCAGAGTCTGACTTCCGCCTGGCCGTGGCTGTGGATGGTGTCAACGCCCTGTGGGGAAGATCCACCATCAAGAAGGAGGATAAGAGTGCTGTGGATCCGGAGGAGCTCACTTTGGTTTATAACCTGAAGAAGCTGATGACGAACGACTGGACTGGAGGCGCCATCATCACCACTGTGTCTCAGACGGGGTCTCTCTACACTTCAAAATCTGCTTACTTGCCTCAAGAGCTGCTGGGAGAGAGGGGGTTTGACAGCATGGACCCGTTCATCCCGGTGTCGGTGCCCAACTACAGCGAGAAGGAGTTTGAGAGCTGTTACCTCTACTTTATGGACCGCCAGTGGCTGCAGCATCCACAAAGTCGAacagaggaaggaaagaaagaactCATCTTCTTAAGCAACAGAAATCCATCAATGTTGGACAGAATTTGTGCCTTCCTATGAAGCTAGAAGAAGACACaaatctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaa

Function

symbol description
dap3 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805188.1 True 1497 mRNA 0.50 13 22332416 22338933

Neighbor

gene id symbol gene type direction distance location
fdps fdps coding upstream 36511 22289236 ~ 22295905 (+)
rab13 rab13 coding upstream 53517 22273092 ~ 22278899 (+)
adar adar coding upstream 148988 22167465 ~ 22183428 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding upstream 207979 22121704 ~ 22124437 (+)
s100a10b LOC104962190 coding upstream 216856 22114119 ~ 22115560 (+)
gba gba coding downstream 696 22339629 ~ 22345550 (+)
polr3c polr3c coding downstream 18858 22357791 ~ 22366153 (+)
LOC120562192 LOC104934671 coding downstream 109586 22448519 ~ 22455722 (+)
prpf3 prpf3 coding downstream 122198 22461131 ~ 22469782 (+)
tars2 NA coding downstream 151820 22490753 ~ 22506497 (+)
G74769 NA non-coding upstream 76938 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 86653 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 89383 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 148379 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 202502 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 579819 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 585659 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 643959 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 655487 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 677874 23016807 ~ 23018595 (+)
rusc1 LOC104958857 other upstream 19896 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other upstream 44122 22279556 ~ 22288294 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other upstream 83889 22197712 ~ 22248527 (+)
snx27b snx27,LOC102196713,LOC102288812 other upstream 177732 22139780 ~ 22154684 (+)
LOC120561537 NA other upstream 193193 22137547 ~ 22139223 (+)
rprd2b NA other downstream 131045 22469978 ~ 22489944 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other downstream 221011 22559944 ~ 22585572 (+)
arnt NA other downstream 271085 22610018 ~ 22625953 (+)
LOC120562537 NA other downstream 321546 22660479 ~ 22667885 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other downstream 350137 22689070 ~ 22705416 (+)

Expression


Co-expression Network