polr3c (polr3c)


Basic Information

Item Value
gene id polr3c
gene name polr3c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22357791 ~ 22366153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805190.1
GCAAATCTAATCGAAGAGCGGaagtgtgttcatgtgttgttAACGAGAAGCCGCATGTGTTTAGTTGACAATCTGAGGGATGCTTAAAAGCAAGGATTGCCTCTGTCTACAAACTCGTCTGTCGGAAAGATGACTGCCCAGGAGGTGCGTCTGTGTGGTCTCCTGCTGCGGGAGCACTTTGGAGAAGTGGTGGAGAAAGTGGGAACACACCTGCTCAAAGGTGGAGCACAGAACTTAAGAACCATCATTCATGAGACTGGCATCTCACTGGACCTGGTAAagaagtctctgtgtgtgctcgTGCAGCACGGGGCTTGTGTGTTCCGCTCAGGCCGTAAAGGAGCTGGGAGCCCCGCAGAGTATCAGACCTGTTGTGATCGGATTCTGAGAATTTTGCGCTACCCGCGCTACATCTACACCTCCAAAACCCTGTACGGTGACACCGGAGAGCTAATCATAGAGGAGTTACTACAGAGAGGTCACATGACCATGAGTGGCACGGTTAAGACAGTCGCCGACCGCCTCACACAGAACATGGAGGAGGGTCGTAGCATGGATTACAGTGAAGTGTCATCCACCTTCTTCAGACTGGTGGAGACCCATTTTCTTCAGCGCTGCCCTCCTCTGGCAGGACCAGAACCAAAAGACAGTGCCACTCCAGCTGCCCCCGCCCCCCCTGGTACTCCTGCCACCCCCGTTAGCACTGCTCCACCCACGCCAGAGAGCTTCCCCGACTGTTACAAGGTGCCTCACGTGACACTCGTAGGGCGAGGCAAACGGCAACTCGCCAGTGAGGATGGGGAAGACCAAAGGAACGCAAAGAAGGCTAAAATGGATTCACAGACCCATGGTGATGAGGGGATTTGCTGGCAGGTGAATTTTGAGAGGTTCCATCTCCACTTCAGAGACCAGGCCATCATCAGTGCTGTAGCCAACAAACTGGACCAGACTAGCAGTGAGATAGTGAGGACTATGCTGAGGATGAGTGAGGTGACAACCTCGCCCACAGCCACTTGCACAAAGCCCCTCTCAGCCAACGAGATCTTCAGGTCCCTCCCGACTAGCTACAACATCCCCAGACCCATCTTAGACCAGTACCTCACGCTACTCATTGATGACCCGATGGAGTTTGTGGGGAAGGCTGGTGAAAGTGGAGGAGGGATGTACGTTGTCAATATGCACAGAGCACTGGCCAATCTGGCTAGGGCCACACTTGAGTCTGTAGTACAAGAGAGATTTGGCTCCCGATCAGCGCGCATCTTCCGTCTGTTGCTAAGGAAACGTCACCTGGAGCAGAAGCAGGTGGAGGATTttgcaatgattccagccaaAGAGGCTAAAGACATGCTCTACACGCTGCTTTCACAGAACCTGGTCCAGCTACAGgAAATCCCAAAGACTCCCGACTATGCTCCTTCTCGTACTTTCTATCTTTACACGGTCAACCAACTCCCAACTGCAAGAATGCTGCTTCAGAACTGCTACAAGACAGTAGCCAACCTCGTAGAGCGGCGCCTGTTTGAGTCCAAAGAGAGCAAACGTCTGCTGGAGAAATCCCAGCGAATCGAGGCCATTCTGGCATCTCTGCAGGCCAGTGGCGCCGAGCCTGAGCAGCTGACAGAGGTCGAGGAGATGATAACTGCTCCTGAAAAGCAACAGCTGGATGCCTTACGGCTTCATATCAACAAGTTAGATTCAGCAGAGAACCAGGTAGATGAAACCATCTTTCTTTTAGAGTCCTACATCAACTCCACCGCATCCACAAGTTAAGAGCATATGTACAAGCATTACAACTCTATTTCCATTACTTTATGTGTATGAATGCTGTCAAGTGTGGCTGTTTTATAGTTTATATGACTGAATTGTTTCATTTTGGAGTGGAGTAAAATCTGAATAGACTA
>XM_039805191.1
GCAAATCTAATCGAAGAGCGGaagtgtgttcatgtgttgttAACGAGAAGCCGCATGTGTTTAGTTGACAATCTGAGGGATGCTTAAAAGCAAGGATTGCCTCTGTCTACAAACTCGTCTGTCGGAAAGATGACTGCCCAGGAGGTGCGTCTGTGTGGTCTCCTGCTGCGGGAGCACTTTGGAGAAGTGGTGGAGAAAGTGGGAACACACCTGCTCAAAGGTGGAGCACAGAACTTAAGAACCATCATTCATGAGACTGGCATCTCACTGGACCTGGTAAagaagtctctgtgtgtgctcgTGCAGCACGGGGCTTGTGTGTTCCGCTCAGGCCGTAAAGGAGCTGGGAGCCCCGCAGAGTATCAGACCTGTTGTGATCGGATTCTGAGAATTTTGCGCTACCCGCGCTACATCTACACCTCCAAAACCCTGTACGGTGACACCGGAGAGCTAATCATAGAGGAGTTACTACAGAGAGGTCACATGACCATGAGTGGCACGGTTAAGACAGTCGCCGACCGCCTCACACAGAACATGGAGGAGGGTCGTAGCATGGATTACAGTGAAGTGTCATCCACCTTCTTCAGACTGGTGGAGACCCATTTTCTTCAGCGCTGCCCTCCTCTGGCAGGACCAGAACCAAAAGACAGTGCCACTCCAGCTGCCCCCGCCCCCCCTGGTACTCCTGCCACCCCCGTTAGCACTGCTCCACCCACGCCAGAGAGCTTCCCCGACTGTTACAAGGTGCCTCACGTGACACTCGTAGGGCGAGGCAAACGGCAACTCGCCAGTGAGGATGGGGAAGACCAAAGGAACGCAAAGAAGGCTAAAATGGATTCACAGACCCATGGTGATGAGGGGATTTGCTGGCAGGTGAATTTTGAGAGGTTCCATCTCCACTTCAGAGACCAGGCCATCATCAGTGCTGTAGCCAACAAACTGGACCAGACTAGCAGTGAGATAGTGAGGACTATGCTGAGGATGAGTGAGGTGACAACCTCGCCCACAGCCACTTGCACAAAGCCCCTCTCAGCCAACGAGATCTTCAGGTCCCTCCCGACTAGCTACAACATCCCCAGACCCATCTTAGACCAGTACCTCACGCTACTCATTGATGACCCGATGGAGTTTGTGGGGAAGGCTGGTGAAAGTGGAGGAGGGATGTACGTTGTCAATATGCACAGAGCACTGGCCAATCTGGCTAGGGCCACACTTGAGTCTGTAGTACAAGAGAGATTTGGCTCCCGATCAGCGCGCATCTTCCGTCTGTTGCTAAGGAAACGTCACCTGGAGCAGAAGCAGGTGGAGGATTttgcaatgattccagccaaAGAGGCTAAAGACATGCTCTACACGCTGCTTTCACAGAACCTGGTCCAGCTACAGgAAATCCCAAAGACTCCCGACTATGCTCCTTCTCGTACTTTCTATCTTTACACGGTCAACCAACTCCCAACTGCAAGAATGCTGCTTCAGAACTGCTACAAGACAGTAGCCAACCTCGTAGAGCGGCGCCTGTTTGAGTCCAAAGAGAGCAATTTGATTGGTTTTCTGCTTAACTGACAGACGTCTGCTGGAGAAATCCCAGCGAATCGAGGCCATTCTGGCATCTCTGCAGGCCAGTGGCGCCGAGCCTGAGCAGCTGACAGAGGTCGAGGA

Function

symbol description
polr3c Predicted to enable DNA-directed 5'-3' RNA polymerase activity and single-stranded DNA binding activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805190.1 True 1901 mRNA 0.51 13 22357791 22366153
XM_039805191.1 False 1659 mRNA 0.53 12 22357791 22365770

Neighbor

gene id symbol gene type direction distance location
gba gba coding upstream 12241 22339629 ~ 22345550 (+)
dap3 dap3 coding upstream 18858 22332416 ~ 22338933 (+)
fdps fdps coding upstream 61886 22289236 ~ 22295905 (+)
rab13 rab13 coding upstream 78892 22273092 ~ 22278899 (+)
adar adar coding upstream 174363 22167465 ~ 22183428 (+)
LOC120562192 LOC104934671 coding downstream 82366 22448519 ~ 22455722 (+)
prpf3 prpf3 coding downstream 94978 22461131 ~ 22469782 (+)
tars2 NA coding downstream 124600 22490753 ~ 22506497 (+)
adamtsl4 LOC104944899,LOC101074756,LOC106573456 coding downstream 152965 22519118 ~ 22556292 (+)
cers2b cers2,LOC108241136,LOC102789054,LOC101467232,LOC102212238 coding downstream 222974 22589127 ~ 22606928 (+)
G74769 NA non-coding upstream 102313 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 112028 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 114758 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 173754 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 227877 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 552599 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 558439 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 616739 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 628267 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 650654 23016807 ~ 23018595 (+)
rusc1 LOC104958857 other upstream 45271 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other upstream 69497 22279556 ~ 22288294 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other upstream 109264 22197712 ~ 22248527 (+)
snx27b snx27,LOC102196713,LOC102288812 other upstream 203107 22139780 ~ 22154684 (+)
LOC120561537 NA other upstream 218568 22137547 ~ 22139223 (+)
rprd2b NA other downstream 103825 22469978 ~ 22489944 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other downstream 193791 22559944 ~ 22585572 (+)
arnt NA other downstream 243865 22610018 ~ 22625953 (+)
LOC120562537 NA other downstream 294326 22660479 ~ 22667885 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other downstream 322917 22689070 ~ 22705416 (+)

Expression


Co-expression Network