LOC120561884


Basic Information

Item Value
gene id LOC120561884
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37336071 ~ 37351571 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805211.1
tgtcccattcttgtcccgcgtgtcactttaatgtacattttgtaaccacACCCACGGTCTGTTCCTAGGAGTCTCAGCGGCTCGGtcctaacccccccccctcctcctcctcttcttcatcctctagaaAAGGAGCCTGCAGCTACATGACTGTGGGACTCCTGTGTTTGGGTGCAGGGGAAGCGCATACCACAGCAGATCTGAAGGGAGAAACTCACGAGCCATCCCAGCATGATGGGAAGAACCAGTTTGGTCTTCAGCCTCATCGTAGCAGCATTGCTCTCTGGCATCGCTGCTCAGAGAACAGATTGTGAAAAAGCCACCGTGGCCGACATCATCTTCCTAGTTGATGGCTCCTCCAGCATCAGCCCTGGAAACTTTCAGGAGGTCCGGTCTTTTCTCCGCAACTTCATCGAAGCCCTCGACATTGGCCCCAACAAAGTTCGCATCGGCTTGGCTCAGTACAGTGATGAACCTCGACAGGAGTTCCTGCTGAAGGATCACTCTGACAAGAAGTCTCTGCTGGCTGCCGTGGAAAGAATTCAACTCGTAGGAGGAGGCACTGAAACAGGAAAAGCCATCGACTTCCTCCAGAAGCAGTACTTCACCAAAGAGGCAGGAAGCCGAGTTGACCAACGGGTGCCTCAGATCGCTATAGTTATCACGGATGGGGAGTCCACTGATGAGGTGAAGGAACCCGCCCAGAAGCTTAGGCAGGACGGAGTCATTGTCTTTGGCATCGGGGTGGGAGAAGCCAACCGGAAGCAGCTTGAGTCCATCGCCAACTGGCCTCCAGATCGCTTCCTTCACTCATTAGATAGCTATCAGGCTCTGCAGGAGCAGATGCAAATGCTGCTGGAaactgtttgtctctctgtggtagCTCAAAAGGAAGGTAAGGCAAAGGATTACGCAGATATTTTCTTCCTGGTGGACAGCGGCATAGATCAAGgacagtttgtgtcttttaagaACGACCTTGTGGAATTGATCAATCAAATTAATGCCGGATCATCCACCTACCGTGTCGGTGTGGCACAGTACGGTCAAGATACCCAGGATGAATTCCTTCTCAATGCTCATCAAACTAGACAGCAACTCCTGTCTGCTGTCAGAGGTTTCCGCCTGCGCCCACAACCCAACCAACCACATTACCTGGGTAGGGCTCTGCTGGACGCCAACACTCGCTTTTTTACCAGTGAGGCGGGGGGTCGTGCACACCTAGGCGCCCGACAATTCCTGGTCGTTGTGAGTGGAAGAGACTCAGATGATCTTGTGTCTAAGGAAGCTCAAAAGATCAAATCAGCAGGGGTTACTGTTGTTGGGATTAGTGCAGGTGCAACTGTGGATGCCTTACTACGTTTTGTCAGTTCTGGGTACGCATTTGATTCTCCCAGAGTACTTATTTTGAAGGATTCCATCGTGACTGAGAAAAAGGACGACATTACTGAAGATTGCAAAGGAGCCAATATTGCAGACATTGTGTTCATCGTTGATGAGTCGGGAAGCATTGGAGAAGAAAACTTTAAGCTGGTGCGCACTTTCCTGCACTCGATTGTGAGCAGCCTGGATGTAAGACCGAATAAAGTCAGAGTGGGCATCGTTACGTACAACGAGGAGTCCTCACCACAGGTCTACCTCGACACGTTCAATAACAGGAAGGAAATCCTCCAGTTCATCAACATCCTGCCCTACAGAGGAGGTGGAACGAACACTGGAGCTGCCCTAACCTTCACTCTGAACAATACCTTTATTGAGGAAAAGGGCAGCAGGAAAAGTAAGGGTGTCCAGCAGGTGGCGGTGGTGATCACCGACGGTAAATCCCAGGACAGCGTGCATGAAGCAGCAATCCGTCTCCGTCGGGCTGATGTCACCGTATACTCTGTAGGAATCAAAGATGCCAACATGAAAGAGCTGAGGGACATGGCGTCTCACCCCATTGATAGGCATGTTTTTAATGTGAACAGTTTCACCGAGCTGAAGTCCCTGAAGCACAGCCTGCAGAAAGTCATTTGTGAAAACATCATTGACCAAGCCGTCAAAGTCAGTGCAAGGGAATCCGAGGCCAAAAAAGCATGTGTAAAAAAGGATGAAGCTGACATCTTCTTCCTGATGGACGACTCGGGAAGCATTGGGAACCGAGACTTCGAAGATATGCAGAACTTCATCTTGAGGTTTCTTGGTACCTTCAATATTGGGCCAGATCATGTCCGCGTCGGGCTTGTGAAATATGCTGATAATCCAACTTTGCAATTTGACCTGACAGCCTCCTCAAATGTTGATAACCTGAAGAAATCTGTGAAGAATATTGCACATGAAGGAGGTGGGACAGAGACAGGAAAAGCCCTAAAATCCATGGGCCCACACTTTAGGAGAGCGATGCAAACTCGTGGTCACAAGGTCCCAGAGTACCTGATTGTCATCACAGATGGGGAATCCACTGATGACGTCACGGCTCCAGCAGAAGAACTGAGGGGGCAGGGTGTCACCATCTTTGCCATCGGGGTGAAAGAGTCAAACGAAGCTGAGCTAAAAGATATTGCAGGCGACCCCAAGAGGACTATCCAGGTCAATAATTTTGATGCCTTGAAATCCATCAACAACGACATCATCACAGACATCTGTACTGAAGACGTTTGCAGAGATGTACAGGGCGACATATTTTTCTTAGCTGACGGTTCTGAGAGCATCTCTAAGGATGACTTCAAGAAAATGAAAGAATTCATGAAAGCCGTCATCAGCAAACCCGCCATCGAGCAGAATAAGGTGCACGTCGGTCTCATGCAGTTCAGCTCTGACAACCAGCTGGAGTTTCCCCTCAGCCGCTACTACAGCACAGAGGAAATTCTGAAAGCCATCGATGATATGGAGCAGCTGGACCAAGGCACACTCACAGGAAAGGCCCTTACTGAGGTGTCGCAGTATTTCGATAAAACCAATGGAGGGCGTCCTGATGTCAGTCAGAGGCTGATCGTGATCACAGACGGTGAGGCCAAAGACGAGGTCATAGGCCCCGCTGAGGCTCTGAGGAAAAAGGGAGTGGAAGTCTACGCCATTGGAGTGGTGGACGCCAACACCACCCAGCTGGGTGAGATCAGTGGCTCAACAGACAGGGTGTATTCTGAGAAAAACTTTGATGCACTGAAGGACTTGGAGAGCAAGGTGGCTTTGGAGCTCTGTCGGAAAGatTGTACAATAAATAATGCTGACATTATTTTCCTGGTGGACAGCTCCACAAGCATAAATGAAACCCAGTATGGAAGCATGCAGATCTTTATGGAGTCAATAGTGAAACAAACCACAGTTGGAAAGGACATGACTCGTTTTGGGCTCATTTCCTACGCCACTGAACCCCAGTCTCATTTTTCTTTGCATGACTATGACTCCAAACGAAAAGTTCTTGCAGCAATACCAAAGCAGAAGCCAACAGAAGGAGACACTTACACAGGCGAGGCCTTGCAATTCTCGTTGGAGTACTTTAGGGCTACACATGGTGGCCGTAAAGCATACAATGTTCCTCAGATTCTCATGGTGATCACAGACGGGGCTGCCACCAACCCTTACATCTTAAAGGAGCACTCTGATGCACTACGAGACAACGGGATCATCGTCATCAGTGTCGGAGTGAAAGAAGCTAAACTTGATCAGCTGATGACTATGGCTGGTGGCGACAAATCCAAAGTTTTCTTTGTGGAAAATTTTGAGGCTCTAGAAACTCTGTACGGAAGTATGTCTTCTGTCCTTTGCAAATCTACAAAGTCAGCTTGCAAGACTGGCGATATTGTCTTCCTACTTGATCGGTCTAGCAGCATCGACCAAGACAAACACAATATCATGAAAAACTTCACGACAACATTAGTCGACAATTTTGAAGTCGGTGAAAAGTTGGTGCATATTGGACTTTGCCAGTTCAGTGACGAGCCTAAGGATGAGTTTTACCTCAACAAGTACTACAATAAGGAGGATTTGAACACACAAATCCTTGAAGTGGATTACACAGGTGGAAACACCTACTTAGGGAGAGCATTGGATCACGTTAAGGAGTACTTTGAGGAGTCGCGGGGCAGCCGTGACCAGGTCCCCAAAAATCTGGTGTTGATCACAGATGGTGATTCTCATGATGACGTGGAGGACGCAGCTGACATTCTCAGGGATCGGAACATTACCGTATTTACCATCGGTGTTGGAGACGTCCACGACCTGCAGCTCCTGCAGATTGCTGGCACCCCAGAGAGGATGTTCACTGTGCGGAACTATGATGTTTTGCACTCTATCAAGCAAGGTGTGATTGACGTCATGTGTGATGACCCAAACCCTTATAGGGATCCATTATAAGTGCTCtattattttaaaaggaaaTCATAGTTTCTCCTGCCTCCATAGCACTGAAGCTGCACTTCCTCCTCCCTATAGTGTAGCCAATGTACTTGGCAGAACCTGGCAAAGGGCCAATACCCTGAAGCATCTCAGACTCAGCAGTAAAAGAAGCAGAATCAGCAAGTGTACAAAATTGCTGAGTCAACAAGAATATAGTCCCTCCCTCTGCATGCTCACCCATAAAAACCCTGAGGTTTCTTTGTCTTCGCTGACACACTTTCTCAAACTGCTTGTCACTCTGTTAAACTGTCTCCTTCTACTTGCaagaataataaagaaaataacatgGATAA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805211.1 True 4670 mRNA 0.48 9 37336071 37351571

Neighbor

gene id symbol gene type direction distance location
LOC120562694 NA coding upstream 9633 37324901 ~ 37326438 (+)
pik3r4 pik3r4 coding upstream 411244 36895389 ~ 36924827 (+)
aldh5a1 aldh5a1 coding upstream 466737 36855419 ~ 36869334 (+)
LOC120563178 NA coding upstream 506649 36809560 ~ 36829422 (+)
atp2c1 LOC103369286 coding upstream 543403 36760510 ~ 36792668 (+)
LOC120561883 NA coding downstream 3412 37354983 ~ 37359625 (+)
LOC120562463 NA coding downstream 10653 37362224 ~ 37377784 (+)
LOC120561882 NA coding downstream 35546 37387117 ~ 37391992 (+)
tmem116 NA coding downstream 53392 37404963 ~ 37424820 (+)
LOC120561682 NA coding downstream 214185 37565756 ~ 37568029 (+)
G78947 NA non-coding upstream 129823 37201191 ~ 37206248 (+)
G78925 NA non-coding upstream 246657 37041691 ~ 37089414 (+)
G78889 NA non-coding upstream 288038 37003583 ~ 37048033 (+)
G78990 NA non-coding downstream 81775 37433346 ~ 37467880 (+)
G78998 NA non-coding downstream 141235 37492806 ~ 37494603 (+)
G78999 NA non-coding downstream 148319 37499890 ~ 37500110 (+)
G79004 NA non-coding downstream 174305 37525876 ~ 37530597 (+)
G79011 NA non-coding downstream 191334 37542905 ~ 37543545 (+)
G78888 NA other upstream 396117 36839222 ~ 36939954 (+)
LOC120562457 NA other upstream 632078 36685936 ~ 36703993 (+)
LOC120562456 dennd4b other upstream 666042 36580965 ~ 36670029 (+)
LOC120563181 LOC107378893,LOC103370072 other upstream 870841 36392252 ~ 36465230 (+)
G78772 NA other upstream 985076 36258160 ~ 36350995 (+)
G78989 NA other downstream 79600 37431171 ~ 37432679 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other downstream 179119 37530690 ~ 37550602 (+)
cmtm7 cmtm7 other downstream 527345 37878916 ~ 37888006 (+)
nek11 nek11,LOC102796711 other downstream 704845 38056416 ~ 38145804 (+)
G79351 NA other downstream 818483 38170054 ~ 38324620 (+)

Expression


Co-expression Network