LOC120561886 (LOC103353818,LOC102295432,LOC102785128,LOC101482972)


Basic Information

Item Value
gene id LOC120561886
gene name LOC103353818,LOC102295432,LOC102785128,LOC101482972
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13414324 ~ 13418452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805214.1
CGTCGTCGTCTTTATCTCAGCTCCTTTTTCGGAGGAAAACAAAGCCAGTTAACATTGGAAGTCGGTAAATTAGCGATACGAATTAGCTAGTGCCGTTACACGAATTGTAACTACACACCAGACCAACGCAGCAACATATAAAGGCAGTGGCAAGCTTGAAGGTCCATCAGCTCTCCTAATGATACATCAGAATTAAGGGTAATTCCATACTTCCTAAGGATGGCTAGTTGTGGGGAGGTAGACCACTCTGTTAGCTCGCTTCCATCCAGTAAGAAAGGCAGCAACAGCGGTGGTGGCAGTGGGAACAGTGCAGAATCCTCATGCTCTGGCTCCAGCAACTCATCCCCGGCCCTGTCTGTACCAGAGTGTGCCAtctgtctgcagagctgcgtccACCCGGTCCAGCTGCCATGCCATCACGTcttctgtttcctgtgtgtgaaGGGAGCATCCTGGCAGAGCAAACGATGTGCTCTCTGCAGACAGGAAGTACCAGATGACTTCCTGGAAAGGCCTACCCTTCTCTCTCCGGAGGAGCTAAAGGCATCGGCGGGAGGTCGGGGTGGGGCTGCAAGTGATCATGCCTGGTATTATGAGGGCCGTAATGGTTGGTGGCAGTATGATGAGCGAACCAGCCGCGAGCTGGAGGACGCTTTCTCCAAGGGCAAGAAAACGGCTGAAATGCTGATAGCTGGGTTTTTGTATGTAGCCGACTTGGAGAACATGGTGCAGTACAGGCGCAACGAGCACGGCCGTAGACGCAAGATGAAGAGGGACGTTTTGGATATCCCCAAGAAGGGAGTGGCGGGACTGCGTTTGGACACTGAGGCTGTTCCTGGGGCCATTGGGGCAGCCGGTCGAGAGAACTCTGCTGATGGGGCTGATACCACAGTAGCAGGTGTACAGCAGCCGGTTACAGGTATCCCCTCTACTGTTACAGCCCCTGCCAGACCTCCCACCTCCCTTGGTGGTCAgcctgacagcagcagcagccccacTCTGGAGGATGCTCTCTCCCAACTGCAGATCAGCCCCAGGCCCACACCTTCTCACGAGCGGTCTGAGGCTggggaaggagaggaagaagacgaggaggaggaggcctcACCCTCCAGGTCCTCTGACCCTCACACCTCCGTGGACGAGTCTGGCTCTGGCGACTGGAGCGacgatgaggaagaggaggaggaggaagaagaagaagggggaGATGGAGAGCGCGTGGAGCCCTGGGAGGGTAGGCCACGGAGGCAAAGACTGAATCCAGAGGACAGAGCCCCTCCTGGCGCAGAGTCAGCCTCTCCCCCTTCTTCATCCAGTAGCAGTGGAAGGTCCAGAATGCCTGATGGCCAGTGTACAGTGACTGAAGTGTGATGTCATCAAAGATACCATCATCACCCAACGGCTATGTTCcatttcattaatttattccTCACTGTATGCTGTCGTTCATTCTGTCACGGATCGGATGTGGGTGGATTGCTTGGTAAAAGAAGTTAAGCATAACATACTCCCATGTTTTTAGGTAAACGACTCGGTTTTAGCTGTCAAATTTGGTGCCTATATTTGGCTCACGATGATCTGGATGTATCTGTATGACTTGTTTGTCAGTCTCATCCAATATATATAGAGTAAGTAGAAGTAATGTTGGATTTTCAGCTCTGGTACTGAGCGTTCTAGTACTGAGACGGGAGGTACAGCTTGGTAATGAGTCAGATGGATACAGCATGTTGTTGTGAGCTGTGGCATTTCCTGATTGCCAATTCAGCAAATCATGTGAGGTAACCGACTTATTATGGCGTTCAGCTGCCATCGGTCTGCTCACTTTTTGCCATTTGGTTGCAGGCAAATCGAGTGTTCTTTTTAAATTCCACAAAAGTGggatttgaaatgtaaaaagaaaaatggcttGGCAACCTGCTTCTGCCTATCCAAGGTAGTCTGGTGTTGAAATCGATTATCCTAATACCCGGAGGGTCTCTGGGAGTCTCAGCCAGATCTGTGACGGTCGAGGGAGAAAGCATGAATGGGGGATGTTACTCCTGGAAATGGAACTGTGTCCGTATCGTTATCATGAACCGCTGCATTGTAATCATCTACACGTTAACTCTCTCCGCTAACATAGCACGCAGAATTGGGCTCATTCGAGCTCAAGCCATCTGACTACTCTTGCAACAAATTTAATCCTTGATAACTTCTTCCCAACATCACCAtacctaaaataaataatttccttACTGAAGATTTAAGTGATTATGAAGCCTTTCCTTAAACATTCTGAAATGTAACTTAACTTTTGAAAGCGTGTCATTTCAGAGCAGATTGTGGATCGACAAAAATCTTCTAGGTTGTTTATCCAGATAAAGAAAGGACACAGAAGTGCTTCGCTATTAAGCAATGTAGGCTATTACGCAACGTAGGTATTTAAATGTGCAACATAAGGAGCCCACAGGAATATCTGTCTGGTGGTTTGTCTTTGATTTCAATTAACCTACAGCTTCTAAAATCTGTGTAGATTACAAATAATGTTTTACATGAATGTGCGTAATAGAAGTACATACATATCAAATTTATTTTAACCTTTCCCAGCTTTAAATAATTGGCATTTTAATGTGAAGTAtcagtgttttcattttaaagctgtTGAGGCCTCTGTAGCCTCGTTAGTATTCTCATTGTCCCGGAATAAAGTATTCTCAATTGGTGTTTCTAAAGTGTTGTGATTTGTGCATGTTTGAAGAGAGAGTTATTTGAACACTACTGGTTGGCAGGATGATGAGAAATATTTTCTTTTGGTTGAGTTTGAGTAAGTCTTTCATTGGTTTGTTTTTCTGCGTTCCTTAAGGTTGTAAATCCTCTTATGTATGATATCTTGAGGCAGTAAGAGAACAAGAACATGCCACTGCTATTGGCCATGCTGCAGAGGTTTCAAgttatgcttttcttttcttattttttataattcttACATGCTTACACCATCAGCTCAGTCTGACTTTCCATTCTGGAGAATAAAGTTTGTGTGTAACAGTTTTTGCTTGGCAACGTTTTGTTACATGGTTTGTAATTTAAGAATAAATTGTCATTTCATCATCCTAAAATGA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase rnf146-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15700 RNF146; E3 ubiquitin-protein ligase RNF146

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805214.1 True 3104 mRNA 0.46 3 13414324 13418452

Neighbor

gene id symbol gene type direction distance location
rspo3 rspo3,LOC103353817 coding upstream 2403 13395438 ~ 13411921 (+)
trmt11 trmt11 coding upstream 150232 13252697 ~ 13264092 (+)
LOC120561555 ncoa7,LOC104938018 coding upstream 171099 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 198969 13211579 ~ 13215355 (+)
ulk4 ulk4,LOC104943585 coding upstream 313855 12998150 ~ 13100469 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 191166 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 640188 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 1165583 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 1171791 14590243 ~ 14593984 (+)
LOC120561707 NA coding downstream 1182437 14600889 ~ 14603683 (+)
G72242 NA non-coding upstream 205290 13208828 ~ 13209034 (+)
G72199 NA non-coding upstream 289797 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 294223 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 468336 12896310 ~ 12945988 (+)
LOC120563130 NA non-coding upstream 563247 12848475 ~ 12851077 (+)
LOC120562636 NA non-coding downstream 27414 13445866 ~ 13448239 (+)
G72309 NA non-coding downstream 53299 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 56918 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 113673 13532125 ~ 13533002 (+)
LOC120561831 NA non-coding downstream 668151 14086603 ~ 14087796 (+)
hint3 hint3 other upstream 164214 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 288427 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 640885 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 685098 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1704066 11708381 ~ 11710258 (+)
prelid3a prelid3a other downstream 49759 13468211 ~ 13471516 (+)
LOC120562530 ext1,LOC103135121 other downstream 141308 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 205996 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 335601 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 715132 14133584 ~ 14144296 (+)

Expression


Co-expression Network