rspo3 (rspo3,LOC103353817)


Basic Information

Item Value
gene id rspo3
gene name rspo3,LOC103353817
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13395438 ~ 13411921 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805216.1
gacagcagagggCTGAAGTCATCAGCCGGCCGGCAGGAGGGGAGTGAATGGGTCCTGCACGCAAAGCACAAAAGCGCTGAAACTGCGGAGATTTACTTTGGTTCAGTTGCCTGCAGCCGCCGACAGCGAGCGAGAGGAGGAGTGCGTTTGACAGCCAAAAGAACTACGAAACCTTCAACTTACAGATTCATTTTGTCTTTACTAGTGTTGGTCCTGTGGTGGCTTTTCACTTTGTTTGTACTTTAGCTGATGCTGAGATGAAGCCGAGACCCTCGGCGCGCCTGGCACATTAGGGTATCCACACACACCGGGACGCACGGCGCATCTCCACTGAGAGAGAcggggagagggggagaaaggtCCATTTGGAGTTCTGCACATGGATATGATAACGCAAACTCTTTGAGGGTCATGTTTACtcataaataacaataattatATTCATCTTTCTGACCTACACTAATGATTGGTTTTGCTGTTCTCCTGCGCACACCGTATGAGAATCCAGCTTTttcgtgtgtttgtttgtttttttggaagGCATGGTCTTTATCACAGCACGGATAACGGATCCCTGACTCCGTCTGGCTTTCTTGGCACATATGAAGATCCTATCCAGGATGTTACAGTCTAAGCGGCCCAGGCATCATTGGGCCACCGTACACTACCATCACCACATATCACCACATAGCTGGGGGTCCTGCTGTATCTAGGAATTATCTAACCTCCACACTCTGCCTCCGTCTGGGGGGAAGAACACGGAATCGTATCCAATAAGTGACTTGGTAAACATTGACATTGGCTTTAAGAGTCTCATCTCTGGGCTACTATGCAATTACAACTGATCTCCTTTGTTTTGATCATCTTGCACTGCATGGATTACACTGGTTGTCAGCAGCACAGCAGCTCCAGGCACCGGCCAAATAAACAGATCTCTGGTGTGAGCTCAGGGTGCCAGCAGGGTGGCTGTCTGACCTGCTCTGACTACAATGGCTGCCTGTCCTGCAAGCCGCGCTTCTTCATGCATTTGGAGAGGATTGGGATGAAGCAGATCGGAGTGTGCATGACTTCCTGTCCTCCAGGCTTTTACGACACACGCTCCCGAGAAAGAAACACCTGCACAAagTGCAGGTCGGAGTGCGACTCCTGCTTCAACAAGCACTTCTGCACACACTGCCGAGCAGGATTCTACCTTCACCTGGGCAAGTGCCAGGAGAACTGCCCTGAGGGGCTGGCCCGCAGTGACACAGAGAGGGAGTGTGTTCCCACAGGGTGCCCTGCAGAGTGTGAGGTGTGTGCGAACAGTGAGACATGCACGCGGTGCAGGCCAGGCCTGTACCAGCTCAGCGGGAGGTGCCACCATGTCTGTCCAGAGGACTACGAGTCCAATGACATACTCATGGAGTGCACACCACAAGTGCACTGCGAGGTGGGCGAGTGGAGCGAGTGGAGCCCCTGCTCTCGGTCCGGTAAAACCTGTGGGTTCAAGCGAGGACAGGAGACCCGCACACGGCAGCTCATCCAGTCTCCATCACCCTTTGGCAATCCCTGCCCTGGGATGTCAGAAACCAAAGAGTGTCTGGTCAAGAGGAGGAAATGTCAAGGAGGACGGAGGAAGAATGAGCGAAGAGAACGGGGGAATCGCAACAACCGAAAAGATAAGGAGAACCAAGAGGGGCGacgggagaggaagagagaaagggaTCGAGAGAGGGACACAGGTGAACGCGAGGACTCTGATAACAGGAACAAAACGGAGCACAGGCATCGCAGAGGCCACGACACAGACCCAGTCTCCCCTGAAGACGGCCTTGTACAGTAGTGCTCTGGACAGACAAAGTCTAGCGCCTCCCCACCCTCCTCCTGTTATCCTCCCATTCTTCCTTCTCCAAAACTTGCCCATCTTCACCCACTGTTCACCCCCCTCGACCCCTCTCTGCAGGGGTGTTGCTGCTACCTGTATGATTTGAATATAATGTTTATGCACAAGCGGGATGGGGCACATTCAGCCACAAGGCTTGGGCCACTATGGACTttaaaaagtctttttttttccctaacCTGTAGCCTTCACTTCCACCACTGAGAGAGTGTCTCTCTGCTGAAATGTGCGGGAGACACTGCTGAGACTGCTATTGGGACTGAAGAACAAAGTGAGAaatgtctgtgactgtgtggcGGACTGGCGGgctggcagacagacagacagagagacaaagacgtTATACTATGTGCTTGTTGATATGGTTATTTAATGGGGCCCTGGTACATTGCGCGTCTTGGTTTTTGAATGTAGATTTTGCAACATTATGTAGAACAattgtttattgttgttgttcctGTTCTGTAgatctctttattttatttggtgcagaatttgtaaagaaaaaataaaagtgagTTTGCTAATTGCCATCTTGTGACATCTTCATAATCACTACAAGTGACAGATGTAGGAGAACCTGCATGCTGTCAATCAAAGGAGTATGGTCAAAAACTGAATATCATTAACATATGTTCTGTATGTCTTGAACAAAAGCTAGTTTGATCCAGATAAGTGTTGAATCTAATCTACCcttggtttttcttttttgtgtaaATGGAATCTGTGCTCTCAGTAAAGCTCCTTGCCTAGGAACCAAAAACACCTGTATGTCAAATAAAACTATAATGGGTTTGTA
>XM_039805217.1
gacagcagagggCTGAAGTCATCAGCCGGCCGGCAGGAGGGGAGTGAATGGGTCCTGCACGCAAAGCACAAAAGCGCTGAAACTGCGGAGATTTACTTTGGTTCAGTTGCCTGCAGCCGCCGACAGCGAGCGAGAGGAGGAGTGCGTTTGACAGCCAAAAGAACTACGAAACCTTCAACTTACAGATTCATTTTGTCTTTACTAGTGTTGGTCCTGTGGTGGCTTTTCACTTTGTTTGTACTTTAGCTGATGCTGAGATGAAGCCGAGACCCTCGGCGCGCCTGGCACATTAGGGTATCCACACACACCGGGACGCACGGCGCATCTCCACTGAGAGAGAcggggagagggggagaaaggtCCATTTGGAGTTCTGCACATGGATATGATAACGCAAACTCTTTGAGGGTCATGTTTACtcataaataacaataattatATTCATCTTTCTGACCTACACTAATGATTGGTTTTGCTGTTCTCCTGCGCACACCGTATGAGAATCCAGCTTTttcgtgtgtttgtttgtttttttggaagGCATGGTCTTTATCACAGCACGGATAACGGATCCCTGACTCCGTCTGGCTTTCTTGGCACATATGAAGATCCTATCCAGGATGTTACAGTCTAAGCGGCCCAGGCATCATTGGGCCACCGTACACTACCATCACCACATATCACCACATAGCTGGGGGTCCTGCTGTATCTAGGAATTATCTAACCTCCACACTCTGCCTCCGTCTGGGGGGAAGAACACGGAATCGTATCCAATAAGTGACTTGGTAAACATTGACATTGGCTTTAAGAGTCTCATCTCTGGGCTACTATGCAATTACAACTGATCTCCTTTGTTTTGATCATCTTGCACTGCATGGATTACACTGGTTGTCAGCAGCACAGCAGCTCCAGGCACCGGCCAAATAAACAGATCTCTGGTGTGAGCTCAGGGTGCCAGCAGGGTGGCTGTCTGACCTGCTCTGACTACAATGGCTGCCTGTCCTGCAAGCCGCGCTTCTTCATGCATTTGGAGAGGATTGGGATGAAGCAGATCGGAGTGTGCATGACTTCCTGTCCTCCAGGCTTTTACGACACACGCTCCCGAGAAAGAAACACCTGCACAAagTGCAGGTCGGAGTGCGACTCCTGCTTCAACAAGCACTTCTGCACACACTGCCGAGCAGGATTCTACCTTCACCTGGGCAAGTGCCAGGAGAACTGCCCTGAGGGGCTGGCCCGCAGTGACACAGAGAGGGAGTGTGTTCCCAGGTGCCCTGCAGAGTGTGAGGTGTGTGCGAACAGTGAGACATGCACGCGGTGCAGGCCAGGCCTGTACCAGCTCAGCGGGAGGTGCCACCATGTCTGTCCAGAGGACTACGAGTCCAATGACATACTCATGGAGTGCACACCACAAGTGCACTGCGAGGTGGGCGAGTGGAGCGAGTGGAGCCCCTGCTCTCGGTCCGGTAAAACCTGTGGGTTCAAGCGAGGACAGGAGACCCGCACACGGCAGCTCATCCAGTCTCCATCACCCTTTGGCAATCCCTGCCCTGGGATGTCAGAAACCAAAGAGTGTCTGGTCAAGAGGAGGAAATGTCAAGGAGGACGGAGGAAGAATGAGCGAAGAGAACGGGGGAATCGCAACAACCGAAAAGATAAGGAGAACCAAGAGGGGCGacgggagaggaagagagaaagggaTCGAGAGAGGGACACAGGTGAACGCGAGGACTCTGATAACAGGAACAAAACGGAGCACAGGCATCGCAGAGGCCACGACACAGACCCAGTCTCCCCTGAAGACGGCCTTGTACAGTAGTGCTCTGGACAGACAAAGTCTAGCGCCTCCCCACCCTCCTCCTGTTATCCTCCCATTCTTCCTTCTCCAAAACTTGCCCATCTTCACCCACTGTTCACCCCCCTCGACCCCTCTCTGCAGGGGTGTTGCTGCTACCTGTATGATTTGAATATAATGTTTATGCACAAGCGGGATGGGGCACATTCAGCCACAAGGCTTGGGCCACTATGGACTttaaaaagtctttttttttccctaacCTGTAGCCTTCACTTCCACCACTGAGAGAGTGTCTCTCTGCTGAAATGTGCGGGAGACACTGCTGAGACTGCTATTGGGACTGAAGAACAAAGTGAGAaatgtctgtgactgtgtggcGGACTGGCGGgctggcagacagacagacagagagacaaagacgtTATACTATGTGCTTGTTGATATGGTTATTTAATGGGGCCCTGGTACATTGCGCGTCTTGGTTTTTGAATGTAGATTTTGCAACATTATGTAGAACAattgtttattgttgttgttcctGTTCTGTAgatctctttattttatttggtgcagaatttgtaaagaaaaaataaaagtgagTTTGCTAATTGCCATCTTGTGACATCTTCATAATCACTACAAGTGACAGATGTAGGAGAACCTGCATGCTGTCAATCAAAGGAGTATGGTCAAAAACTGAATATCATTAACATATGTTCTGTATGTCTTGAACAAAAGCTAGTTTGATCCAGATAAGTGTTGAATCTAATCTACCcttggtttttcttttttgtgtaaATGGAATCTGTGCTCTCAGTAAAGCTCCTTGCCTAGGAACCAAAAACACCTGTATGTCAAATAAAACTATAATGGGTTTGTA

Function

symbol description
rspo3 Predicted to enable heparin binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation; and posterior lateral line neuromast development. Predicted to be located in extracellular region. Is expressed in several structures, including digestive system; endoderm; forebrain neural keel; nervous system; and presumptive telencephalon. Orthologous to human RSPO3 (R-spondin 3).

NR:

description
PREDICTED: R-spondin-3-like

GO: NA

KEGG:

id description
K23098 RSPO3; R-spondin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805216.1 True 2681 mRNA 0.49 6 13395438 13411921
XM_039805217.1 False 2678 mRNA 0.49 6 13395438 13411921

Neighbor

gene id symbol gene type direction distance location
trmt11 trmt11 coding upstream 131346 13252697 ~ 13264092 (+)
LOC120561555 ncoa7,LOC104938018 coding upstream 152213 13239114 ~ 13243225 (+)
cmtm8b cmtm8 coding upstream 180083 13211579 ~ 13215355 (+)
ulk4 ulk4,LOC104943585 coding upstream 294969 12998150 ~ 13100469 (+)
mroh1 NA coding upstream 514035 12851758 ~ 12881403 (+)
LOC120561886 LOC103353818,LOC102295432,LOC102785128,LOC101482972 coding downstream 2403 13414324 ~ 13418452 (+)
LOC120562882 LOC104926221,LOC103388613,LOC103353832 coding downstream 197697 13609618 ~ 13621344 (+)
zgc:110410 LOC104941306 coding downstream 646719 14058640 ~ 14068948 (+)
LOC120561614 NA coding downstream 1172114 14584035 ~ 14588452 (+)
si:cabz01093077.1 NA coding downstream 1178322 14590243 ~ 14593984 (+)
G72242 NA non-coding upstream 186404 13208828 ~ 13209034 (+)
G72199 NA non-coding upstream 270911 13119637 ~ 13124527 (+)
G72198 NA non-coding upstream 275337 13112215 ~ 13120101 (+)
LOC120562936 NA non-coding upstream 449450 12896310 ~ 12945988 (+)
LOC120563130 NA non-coding upstream 544361 12848475 ~ 12851077 (+)
LOC120562636 NA non-coding downstream 33945 13445866 ~ 13448239 (+)
G72309 NA non-coding downstream 59830 13471751 ~ 13473470 (+)
G72314 NA non-coding downstream 63449 13475370 ~ 13483111 (+)
G72319 NA non-coding downstream 120204 13532125 ~ 13533002 (+)
LOC120561831 NA non-coding downstream 674682 14086603 ~ 14087796 (+)
hint3 hint3 other upstream 145328 13245668 ~ 13250110 (+)
G72204 ctnnb1,LOC103388302 other upstream 269541 13124934 ~ 13125897 (+)
LOC120562335 NA other upstream 621999 12760817 ~ 12773439 (+)
LOC120563165 scx other upstream 666212 12711602 ~ 12729226 (+)
LOC120561922 NA other upstream 1685180 11708381 ~ 11710258 (+)
prelid3a prelid3a other downstream 56290 13468211 ~ 13471516 (+)
LOC120562530 ext1,LOC103135121 other downstream 147839 13559760 ~ 13606245 (+)
LOC120562711 eif3h other downstream 212527 13624448 ~ 13688514 (+)
LOC120561928 csmd3,LOC101478087,LOC108232275,LOC102799137,LOC102309299,LOC102195523 other downstream 342132 13754053 ~ 14046136 (+)
cmc1 cmc1 other downstream 721663 14133584 ~ 14144296 (+)

Expression


Co-expression Network