ncapd2 (ncapd2,LOC102792512)


Basic Information

Item Value
gene id ncapd2
gene name ncapd2,LOC102792512
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23762873 ~ 23789560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805241.1
TCTAACTTTGTGTTGTAGTGTTCACAGTTGTCCAGCAGGTGGCAGTGTTTGTTTAAAACCATGCGCCCAAATCTTTGAGGCGCGTGTATGTGACGTCAGAGTTTCGTTGCTTTGGCGCGATGTCCATACTCATTTGAAAACTTAAACCGCCTTAAGACGGCGGAGAGAGCAGGTTACACTTTTGTCTTCAGAGGTCGTCATTGTGGCTAAAGGAAATTCAGCCGCCACAGGGATGTCGTGGGACTTTTTTGTGCCTGTGTGCGTGGGTGACCTGGTGAAGACTGGGGGGATCAACCAGTACGTGGTTCAGGATGTGGTGCCCCCAAAACAGCTGCCACCATATCTCAGTAAATTTAAAGCGGCATTGAGAAGCCAAGGGCCTTTGTGTATATTGGAACATTTTGACACAGGCTACAGCGTGCTTCAGCACTGCAACTCAGTGGAGCTAGCTGTGAAAGAGGATACTCTGGAGTTACTAGTACAAGTGGTTAGTGGCCTTGCTGCTTCTCTGCCAGCACTTCTCGCCTCCACCTCTGTCTCAGCTGACGAGCGCAAAGAGAAACTTAATGCCGTTAAAATGAGTGTCTACCTGCTCTGCAAACTCACAGAGACCTTTGAGAGTGACTCCTGTAGACAGAGTATCGTCACGGCACCTGGGAAGGGCGGTAAAAAAGGCAAAGGTGGTGGGGAAGGACTGCTGCAGTGGGACTCTGAGAGAGAGAAGGTGCTGCAGGCCCTCGTCCAGCTCCTCCAGCTGGATATCCGTTCACTCTGGAGCCTCTCCCTGGTGGAGGAAGAGTTCATCAGCTGTGTGACCTGCTGCTGCTATAAACTACTTGAGAACCCAACCATCAGCCATGTCAAGAGCAAACCGACCAGAGATGGTATAATCCACTTACTGGGGGTGCTAATCAAAAAGTACAACCATCTCCTAGGTGCAGGTGTAAAGGTCATCCAGTTGTTGCAACACTTCGAGCAGTTGTCATCTGTGTTTGCTCAGGCAGTGTCTGTGTGGAGCACAGAATATGGAGTCAGGGCGATCATAGGAGAAGTAATAAGAGAGATTGGTCAGAGGTCAAGTGAGGAGCTTGCTAGAGAGGCATCGGGGGTCAAAGCTTTTGCTTCCTTCATTGCAGAACTTGGCAGCCTGGTACCTGAATTAGTGATCCCCAACATTAGTGTGCTCATCACACATCTGGAAGGAGAGAGTCACTCAATGCGTGTCGCTGTGTGTGAGGTGCTGGGAGAGATCCTTGTGCGGGTCCTGTGTGGTGACGGGCTGGATGAGTCCGGTAAAGCCGACCGCGACCGATTCTTTGACACACTGCAAGAACATCTGCATGACACCCATTCCCATGTCAGGGCACGTGTGTTGCAGGTCTACACACGCATAGTCAACAGCAAAGCACTGCCTCTGTTTAAGTACAGTGAGGTGATGGAGCTTGCTGTGGGACGACTGATGGACAAATCTATAAATGTGGTGAAGAGTGCCATCCAGCTGTTGGCAGCCTTCATTGCACACAACCCCTATagctgcaaaTTGAGCAGTGCAGATCTGAAGAAACCGCTAGAGAAAGAGACCGCTAAACTCAGAGAGATAAAAGCGCAACTGGAGGGAAAAGCACCAGTGGCAGTGATAAAAGCATCTGAGCTGTGGGCCGCCATGGAGCCTGAGCTACTTGTCACTGTCACGACAGAGCTGGAGCCCACAAGCGAagcgaaggaggaggaggatgacgaCAGGGATGTGGAGGAAAACAAGGAGGCAGAAGATGATAGAGCAACTGCAGTGAAGGTTGCTCAGTACCTCCGTGTCAACAAATACAGGAGTGCTGTGCGTCTTTGTATAAGAGCCCGCAGCTGTTTCCCTAAATCTGAGATGTTTGCGTCTCTGTCCACTCTCACTGCGGAGACTTTAATGGACACACTGGCTCTCATATTCAAAGGCTCTGACGAGGACACCTCTGAGCTCAGCCAGAACTTGCCACCAACCCCgcagaaagaggcagagaagGAGGGGGAGGATGGGGAGCTGAAGAAGCAGGAGATGTTGGTGCAGTACCTGAAAGACACAGAAACCTTCGCCTTACAAGTGGAAAGAGCAATATCTGTCATCAACACCATGCTCTACTTGAAAACCACTTCAGTGGTCCAGGAGGCTGTGCAGTTTTGTGTGACAGTGTGCGAGTTCAGCGTTGCCAACTCCGTCAGTGGGGTGAGGAAGATGTTACCTCTGGTCTGGTCAACTGATTCTGCCATTAAAGATGCTGTCGTTCAGGCCTACAGGCGCCTGTATCTGAACCCTCAGGGAGAGACCATCAGGACAAAAGCCCACACTCTTGTTGACAGTCTCTCTGAGCTGATGGTGGATGCGTCTCTAGGAACAATACAGTGTGTTGAAGAAATAGTGCAGGAGTTCTTTGGCAGTGGCAGCAATCTCCAGTCCACTGTAGTGCAGGTCTTATGGGAGAGGTTTACTGGCAAACGAGAAACTTCTGGCCTACACAGGCGAGCTGCAGTTTTACTGCTGGGCATGGCTGCACGGGCAGAGAGGGAGGTGGTCCTTAGTAATCTGGACACTCTTTGTTCTGTGGCTCTGGGAGAAAAAGTGACTGAAGACTTTCTTCTGGCCAGAGACGCAGTCATCACCATCTGTAGCATCACAGACCATGTCAGGCAATCAAAAGGCGCTCCATTTAGACTACCACAGGATCACCAGCTCTTCACCTGCCTCACACAGGCCATTGCTGACGGTGTGGTAATGGAAGACCCTTACTGGCAGAGCTTCATGGAGCAGGCTGTCCGTCTCCTCTACTTCATGGCTGAATCCCCTGACCAGCTGTGCACTCGGCTGCTCCAGCGCAGCGCTCGCCTCTTACTAGATCAGATTGCAGAAGGTGGCGAACTCAACAAGGACGCTAGCCAAATGCAAGATGTATCTCAAGAGTCCAACGAGCAAGGCGAACAAGTGAACTGTGTATGTCTGGCCCAGCTGTTGgctctgtgtggctgtgtggcttTCTGGCAGGTGTCTCACCTTGAGCGCAGTGTGAGCGCTGAGCTgcggaggaggagaggagagaaagaggagagggaggagaaggaaaaGGGCCCATCCAGCAAAGCTAAGCAAGCGGCCAATGAGAGTGCTATGGAGGAGGAGCTGGGGTTGATTGGTGCCTCTGCTGAAGATACGGAGGCTGAACTCATCAGAAAGATCTGCGAGACTGAATTACTGGCCGAAGAGAACCTGCTGTCTGCATTCCTTCCTCTGTTGGTGAGAGTCTGCAGCTCCCCAGGACGCTATTCCCACCCACAGCTCACCACTTCTGCCTGTCTGGCACTCTCTCAGTACATGATGATAAGCCCATCGACGTGTGAAGAAAACATCCGTCTCATGTTTACAGTGCTGGAGCGCTCCACTCTTCCTGTGGTCAGGGCAAATGCCATAATAGCTCTGGGAGACCTCACTGTCCGTTTTCCTAATATCTTGGAGCCCTGGACACAGAATCTCTATGCCAGGCTCAGTGACGAGGTTCCTTCAGTGAGGCAGACAGCTGTGACAGTTCTTACTCAGTTGGTGCTTAAGGATGTGCTCAAGGTAAAAGGTCAAGTCAGTGAGGTGGCTGTGCTGCTAATTGACCCAGAGCCTCACATTACCAGCCTGGCCCTGAACTTCTTCAACGAGCTGGCCTCCAagGACAATGCAATCTACAACCTGCTCCCAGATATCATCAGTCGCCTGTCTGACCCAGAGAGAGGCATGACCTCCGAGGACTTCAACACCATCATGAAacaGCTGTTCTCCTACATCACCAAGGAAAGGCAGACAGAGTCTCTGGTAGAGAAACTATGTCAGCGCTTTAGGACTGCCAAGACGGAGCGTCAGTGGTGTGACTTGgccatgtctctgtctctgctgtcCATGTGTGAGCGTGGTTTCAAGAGGCTGCAGGAATGCTGGGAGTGTTACAGCGACAAGTTAACCGAGCCTGGCGTCTACCAGCCTCTGCTCTCCATCACTGCCAGGCTCCGTCGTGGGGCCAAAGCCCAGTTCAAGGCCCAGGTAGATGAGTTTGAGAAGCGGCTGACTGCGGTTCATACACGGGGTCTGGAGAATGTGGAAAGTCCTGAGATGGATGAGGAGAACCAAAAAGGAGTAGGATCCTCTGAGAAGACAGTCATGTGTACACCTCCACCCGCCAGAGGCCGTACGAGGTCAAAAAGAGGTCAAGCAAAGCCTTCAGTTTCTGGCCGTGGCGATGACAGTTTTGTGACTCCTCAGAAATCTCGCAAGTCCAAAAAACCTGCGATCACCTTCAGcagtgatgaagaggaggatgaagaggATGCCGTAATGGCGGAGAGTGAGACCCCTAAAGTGACGACACCCATCTCCCGCACATCCCGGCGAGCTCGCCTCAGAAACTGATCTGACTTCTGTTGTATTGTCTTATTTCTGTGTATCTTTCTTTTTAATCCATTATCTGAAATGGTGTATTGcgtttttacatattttttactttttaatcttatttttaaatcttttcttttttatcttttctttttttcaagataTTGGTACTTTTGCACCAAACTGAAGTAGTCTGAGGACTTGTGTAACGACATAGCATCAAATAAACCTGCTTCTTGTTTTGATTACCACTCTA

Function

symbol description
ncapd2 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within mitotic sister chromatid segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in condensed chromosome, centromeric region. Is expressed in nervous system; optic cup; pectoral fin; pharyngeal arch 3-7 skeleton; and proliferative region. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPD2 (non-SMC condensin I complex subunit D2).

NR:

description
condensin complex subunit 1

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K06677 YCS4, CNAP1, CAPD2; condensin complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805241.1 True 4670 mRNA 0.51 32 23762873 23789560

Neighbor

gene id symbol gene type direction distance location
ing4 ing4,LOC106605735 coding upstream 55 23757600 ~ 23762818 (+)
nop2 nop2,LOC102793100 coding upstream 5854 23749945 ~ 23757019 (+)
LOC120561911 NA coding upstream 16315 23742367 ~ 23746558 (+)
kel NA coding upstream 20615 23736978 ~ 23742258 (+)
zyx zyx,LOC102794270 coding upstream 26442 23719861 ~ 23736431 (+)
wu:fj39g12 LOC104929004,LOC100710783,LOC101474397 coding downstream 1440 23791000 ~ 23793093 (+)
gapdh gapdh,LOC102791742 coding downstream 7518 23797078 ~ 23802187 (+)
opn9 NA coding downstream 13992 23803552 ~ 23808166 (+)
iffo1b iffo1,LOC102791264 coding downstream 19020 23808580 ~ 23822343 (+)
si:dkey-260g12.1 NA coding downstream 33764 23823324 ~ 23829685 (+)
LOC120561968 NA non-coding upstream 129039 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 268396 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 321647 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 408698 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 412106 23346840 ~ 23350767 (+)
G75427 NA non-coding downstream 93617 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 153933 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 182767 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 238323 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 259365 24048925 ~ 24052956 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 111377 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 191630 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 268839 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 679726 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 851353 22900089 ~ 22911520 (+)
LOC120563047 vamp1,LOC104928996 other downstream 84349 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 237355 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 266877 24056437 ~ 24073698 (+)
G75644 NA other downstream 645579 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 731175 24520735 ~ 24534276 (+)

Expression


Co-expression Network