gapdh (gapdh,LOC102791742)


Basic Information

Item Value
gene id gapdh
gene name gapdh,LOC102791742
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23797078 ~ 23802187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805259.1
CTTTAACCTCTGGTCAATCATAAAACCACACAGCTCAACTTCGTTCTTCCCCACTCACAACCGGAGTCGCAAGACAGACTGAGGCTTCTCACTTACGAGGATTAAGACAACCCAGTCAAAATGGTGAAAGTTGGAATCAATGGATTTGGCCGCATCGGGCGTCTGGTGACCCGTGCTGGTTTCACCTCCAAAAAGGTGGAGATTGTGGCCATCAATGACCCTTTCATCGACCTGGAGTACATGGTCTACATGTTCAAGTATGACTCCACCCACGGCCGCTTCCATGGTGAGGTCAAGGTTGAGGGAGACAAGCTGGTCATCGATGGTCACAAAATCACCGTTTTCCACGAGAGGGACCCCGCTAACATCAAATGGGGGGATGCTGGAGCCCAGTACGTGGTTGAGTCCACTGGTGTGTTCACGACCATTGAGAAGGCTTCTGCTCACTTGAAGGGTGGTGCCAAGAGAGTCATCATCTCTGCACCCAGCGCTGACGCTCCCATGTTCGTCATGGGCGTCAACCACGAGAAGTATGACAAGTCCCTCCAGGTTGTTAGCAACGCTTCCTGCACAACCAACTGCCTGGCCCCCTTGGCCAAGGTCATCAACGACAACTTCGTCATCATTGAGGGCCTGATGAGCACAGTTCATGCCATCACTGCCACCCAGAAGACTGTGGACGGACCCTCTGGCAAGCTGTGGAGGGACGGCCGTGGTGCCAGCCAGAACATCATTCCTGCCTCTACTGGTGCTGCTAAAGCTGTCGGCAAAGTCATCCCTGAGCTCAACGGCAAGCTGACTGGCATGGCCTTCCGTGTCCCCACCCCCAACGTGTCCGTGGTTGACCTGACAGTCCGTCTGGAGAAACCCGCCAAATACGAAGACATTAAGAAGGTTGTGAAGGCCGCAGCTGATGGACCCATGAAGGGCATTCTGGGATACACAGAGCACCAGGTCGTCTCCACAGACTTCAACGGTGACGCCCGCTCCTCCATCTTTGATGCTGGTGCTGGCATTGCCCTCAATGACCACTTTGTCAAGCTGGTCACATGGTACGACAACGAGTTTGGGTACAGCAACCGTGTCTGCGACCTGATGGCCCACATGTCTACCAAGGAGTAAACCAACCAGCCGATCACTCGTCACTGCACTATGCCACATCACCCACATTCTCCTCCTCATACCAGAGTCATACATACGCAATAGAGGATTGTGTTATCTATGACTGCCCGTTTCCTTAATAACAGGCAACTACAACCAGATGCCTGAGGAAAGGTCCCACAGAAACAAACGAAAAGATTTAAATTGGTGACCAATtccttttttgtatttcttcccTGTTCTGTTCTTGTGTGAGATGGAGTGAAGTTGTGAGAGTCCTTGTCTGTAGTATTGAATTACTGCAGTTTTGGAATAAAGTCCTCTGTGAGAATCA

Function

symbol description
gapdh Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

NR:

description
glyceraldehyde 3-phosphate dehydrogenase

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805259.1 True 1435 mRNA 0.51 12 23797078 23802187

Neighbor

gene id symbol gene type direction distance location
wu:fj39g12 LOC104929004,LOC100710783,LOC101474397 coding upstream 3985 23791000 ~ 23793093 (+)
ncapd2 ncapd2,LOC102792512 coding upstream 7518 23762873 ~ 23789560 (+)
LOC120563206 NA coding upstream 29611 23767185 ~ 23767467 (+)
LOC120563205 NA coding upstream 32433 23764315 ~ 23764645 (+)
ing4 ing4,LOC106605735 coding upstream 34260 23757600 ~ 23762818 (+)
opn9 NA coding downstream 1365 23803552 ~ 23808166 (+)
iffo1b iffo1,LOC102791264 coding downstream 6393 23808580 ~ 23822343 (+)
si:dkey-260g12.1 NA coding downstream 21137 23823324 ~ 23829685 (+)
tnfrsf1a NA coding downstream 34594 23836781 ~ 23843959 (+)
plekhg6 NA coding downstream 41890 23844077 ~ 23858278 (+)
LOC120561968 NA non-coding upstream 163244 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 302601 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 355852 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 442903 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 446311 23346840 ~ 23350767 (+)
G75427 NA non-coding downstream 80990 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 141306 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 170140 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 225696 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 246738 24048925 ~ 24052956 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 145582 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 225835 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 303044 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 713931 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 885558 22900089 ~ 22911520 (+)
LOC120563047 vamp1,LOC104928996 other downstream 71722 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 224728 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 254250 24056437 ~ 24073698 (+)
G75644 NA other downstream 632952 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 718548 24520735 ~ 24534276 (+)

Expression


Co-expression Network