iffo1b (iffo1,LOC102791264)


Basic Information

Item Value
gene id iffo1b
gene name iffo1,LOC102791264
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23808580 ~ 23822343 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805260.1
CACTTACTCCTGCCTGCGGTCACATCTTATTGCCAGAACTTCAGTGACGCGGTGACACTGGATTTCTGTGTTATTCATTCACGCTCTGCGTCATTTTCTTCGTTGAATTACGTTTATTTTGCAAAACATCTCTTGCCGAGAGGCGCCGCATTTTGTATCCTTGCTCGCAGCCCATTTGGAGCCgctttttggatgttttgttGCGCACGGTTAGAGAGCACTGATCATCAGTCGGCGTTAAGACCTCTCAGTTTTAAGGATAAGATTCTTATTTAGAAACGGTTAGCTATATAATCGGGTAGATAGGCTACTGGCGTTTTGTGCACACGTCTTTCTACGCTTAACAGCTTAGCCTATTATTGATCCGTTTTATTCTGTTGTAGCAAGACAATTCCTGTCCGTGTTCATGCCAGATCTGCAGCGCTTTAGTTTTCCATACCATAGCATGAATCCTTTGTTGGGTGCCAACACGCATCTCCAACAGCATCAGAGTCAAGCTCCCGGACACCCGGACTCTCCTTCAGCACTCCTGTCAGACGCCGTTTTCGGTGGACCGGACCCGACGTCCTTTATTCTGGGTGAGCAGCACGGGCAGGGGCCTGATCATCCGGGGCCTGACTTCACCGCACCCTCACAGACCTCACTTTACCTCCACCACAACCACAGTCACTACCAGCACCGCGCAGTGCCACATCCCCCCGCAGCCATGGCTCTCAGAAACGACTTGGGATCCAACATCAGCGTCCTCAAAACTCTCAATCTGAGGTTCAGATGCTTTTTGGCAAAAGTACACGAATTAGAGCGCAGGAATAAGATTTTAGAGAAGCAGTTGCAACAGGCGCTGGATGACAACAGCTGCTGTCAAGGTGGATGCTGTAAGGGCAGGGGGCACACCCAGGAGGCAGGTGTACAGACCGGATTTGTCGATACCATCCCGCTCAGGCCCGGATCCCTCCCCTTCCACAACACCAACAACTCAGCCAGGAGGCCTACAACACTGTTCACACCACCACTCACAACAGCATCCGCAGAAAACTCCAGTTCAACCCAAACAAATGCCGCTTGTAACCCATCCATCACCATCAGCCAGGCCTCTCCCTGTGTGGACTCCCCTGGCTCTGGCTCTAAAAGTTTCTCCAACACCAGCGCAGGCCCGGGGAGCTCCACCACCAACCCCCCTCCACGGTTCCTTCCAGGCACCATCTGGTCCTACAACCACACCCGCAAGTTTGGCCCCGGTGCGGAGCGTCTGACCAGTCCAGGAGTGTCCTGGGTGCACCCTGACGGAGTCGGGGTCCAGATTGACACCATCACCCCTGAGATAAGAGCCCTGTATAATGTGCTGGCCAAagtgaagagggagagagatgagtATAAACGCAGATGGGAAGAAGAATACACTATGAGGATGGATCTGCAACAGAAAATTGGGGACCTACAAGagGACCTGCAGGAGAGTGAAGGCTGTCAGGACGAACTGGCACTCAGAGTTCAGCAGCTGAAGGCAGAGCTGGTTCTCTTCAAAGGCCTCATGAGCAATAACTTCACAGATTTGGACAGTAAGATCCAGGAGAAAGCCATGAAGGTGGACATGGACATCTGCCGCAGGATTGACATCACCGCTCGTCTCTGTGACGTAGCTCAGCAGAGGAACTGTGAAGATGTGATCCAGATGTACCAGGTTCCTAACAACCAATCATCCCTAAACTGCCGCCGGAAACATACTCCTCTGTCCTTCAACGGAAGCGAGTGTGACGAACCTGTCAGCACCTCTGAAAGTGACGGGGGCGGGGTCAAAGACGAAGAGCACTGTGGctcatcagccaatcagatcaaTGAGGAGATGCAGAGGATGCTGAACCAACTgcGTGAATGTGAGTTTGAGGATGATTGCGACAGTCTGGCCTGGGAGGAGACTGAAGAGACGCTGCTTCTTTGGGAGGACTTCCCAGGATGCACTCTGCCTCCtgaccccacccacccaccaggAGAGGAGGACTGTCTGGAAAAGGTGATTAATGACACAGAATGTCTTTTCAAGTCCCGAGAGAAGGAATACCAAGAGACAATTGACCAGATTGAGCTGGACCTGGCCACAGCAAAGAGTGACATGAACCGACACCTCCACGAGTACATGGAGATGTGCTCGATGAAGAGAGGCCTGGATGTTCAGATGGAGACCTGCAGGAGACTCATCACACAGAGTGGAGACCGGAACTCTGCGGCGCCTGCGTCTGCTGAGGACAGTGACCAGAGAGAAAACGACAGGTATTCGTCCTCTCCGCCTTCCTCCAGTGCTGGGAGATCTTGACACTTCCTCACTCCGGCAGTAATATGGCCTGTGGTCACGTAACCTCCACTGCATCCAGCTACAGTACCACAGTGACGCAATACACACCTGTAACTATGGCAACACCATGTTTACATATGAACCTCTTTTATTTACGGAGTCATATTGTTAATTCTTCCTGCTGTCCATGCAAGTCAACTTTGGTTTGATGAGACCTTTTAGCACTGAAACTGTGACTGAGTAGCAGAGCTGGATTGTTGTCATTACTACTTCATGCAGACGTCACTGCCCTGCAGAGGGGAGAGGTCAGACCTTGTCATCTTGTGTTTAACAGCAGTAGTCAAGAAAATGAATCTAATAATGGATTGTCCTGTGAAGATTCAGAAAGTTGAATATCCTGAATGTATTATAAGTAAAGGGGCTGATGTTCTTGCAGTGTAGTGCAGTATACTACAGGAAAGCATAGCATGACTTATTCAATCCAAACACAGTAAAACACTTGATAACCCAGGCATCTGATGCTAATCAAGCAAATACATGTTGTAAGGTTACTTTATAGAGTCCACTCCACACATATTTACAGTCCTGTAATTATCTTATTTCACTACACAAACAAAATGCACAGGGAGCAGAATTAGTCAGTTTGATATTGATAATGATGAGTCTTTAAAGCCTAATAAGATGTAATGATTCAGCATTGTACTGCCTTACAGCTTCAGATTCAGAGCTTGCTTTTCAGAGGCAAAGCAAACATGAAGTCATAAATAAATCATACATCCGTGCTTTATTTAGCAAACAAAAATTATAAGACACCAAACATTAGCTGTGGAGCAGCAGAGTTGTGTCTCTGAATACCaacatccctcctccctcttggCAACATGAATTAAGTATGATCttgaaaacagtaaaaaaagaaaaagttcatAATTCACTTATTTATTTGCTGCCAATTACCTGAATCCAAACTGGATTTTATGGGAGGAATCCACCTTGAAACAGTGTATCCATGTTATCCATTGCTGATGCACTTTGGATTTCTTGGCACACAGAGAGGGAAATGTTGCATTAAATCTACGAATAAACATCTCATCATGTCacaacattttattattttaacaacGCTTTAACAGGGGGTTGCACTTTGGTGTCAGGCTTAGGAAGAGCACACCACACCATTCTAACATTGCAACCCTCATACACAAATAAAATCTATCCTAGAATAGCCACCAACATCAATTTGCCAGTGGGAATTTTCGAAAATAACTACCTAGAGCACAGACAAAGTAATTTACAACATTTCATAACAAAGAGAACCCCATCTGAAATGCAGACAAAACTGTTAATGGTGCTTCATAAGAAACAGCAGAGAAGAATGTTTGTCAGCGTCAGAGGGAAGCATGTTTGAGGCAAACTGTTTTAAATGCATTCTTTTGATGCTGATCTGGAGTCAGTGTTGGCTCTTCGTTCTGCTCTCTGCCAATAAAAGTACTGTGTGATGAAGTGCACTGGCACCCAAGTGTCATGTAGCTGTTAGTAATTAGTTTCATTTTCAGCAGTAATGCTTAGATTAGAGTCAGGCCCTGTGTTTTTCGAGCAGAGCTGCATGTTTGAGCAGAATCACTTTTAAAAGGAGAACAAAAGGAAATAATGTAAGTTAGCTGTTGAGTGCCAAAATAAAATTGTCAGATTGTAAATCAAGAGGTAATTGctgtaaaataacaaaacaatgtcTAAATATAGCTGCCAAAGCTATTTCACCAGGGTGCTTGATGTATAAAATAAACCTGTTTTTGAGCCTGTTTGCACAAAGGAAGAGCAAagcaaaaatgtatataaaacaATCAGCACTATtgtaaaacaaacatacaaatgtCGACACGCTGGAAAAGAAACTATATTTCTTCTATTGATATTTCCTCATCTTTTACATGTTGCAGGTGGGGTACTAGATTAATGAATTTAAACACAAACGCATACGGCATTTTAATaacttcatttgtttttttcagggCACTTTCAACCATGAAATTTAACTCAGACACACTGCTAAAGTAAAACATACTTTAATGTACTTTAATGTACTAAGAATGTTGGCATACTGCTGGAAATTATCACTGTCAGGGGAACGCCCCCCACCCATCACTGCTCTATTATCAGACACCGTTGTCTAAATATAGTCCTGGCTGTAGTTTCTTCTGTGTGGTTGTACAAGGTGAAATATTTCTTCTGCTTCTACTACGACTCACACTACAACACTTTGTTTCAATAATAATGATCGTAAGAGGGCAGATTTGAAGCTTATGTAATCTCATGCATGTGTGGCCGTTGGAATTAGCTGAATGCTAATCGCAGTGTTTCCACTACTGTTTGAACACAGAAGGAGGATGTGAGAGATAAATTGTGTGAGACATAAAACACGCCATTTCCCTTTGTATAGTTTTACTTTTATGCACTGAGTGAGTCTCTATGTATGCATGTGccagtgtgtatgtttttgggTGTTATGTCTGTATAGCGAGTGTTTTTAAAAAGACTTTTACTGGGGCAAATGTACAACATGAAGAAGAAGGAAACATAACCAGTCCAATTTGATATTGTCTCTATGTTTAGCATTTGAGACTAAGCTGTCTTTTTTGACAATAATCACCTCAAAATtgtaaatatttaaatgataatGGAGTTTTTTCCATTGGTACTTTTTCTTTATGAGTGTATGTGGTTGCCAAACAAAGTCAATTTAAAAATAACTCAAGTTAAAAACAAAACGAAGCGGAACTTCTGAAATGTAAATGCTTTAGCGAATTGACTGTAAGATGGCTTTGATATTATACCGTATGTGTAAAGGAAATTTAGCTTTGAATATATACCTGTGTTCAAAGAATGCAAATGAAGAATGTCCACAGTCACACACCTGGAAAGAAACTGAGTTAAGACAAAATTACCTGATTGCTCTCTTTAGTTTTTCAATAGAAATGATTCCggttaatacaaaaataaaagagtTTTTGACACTTCTTAATGTCTTTACAGAGGAGACAAAATATTGAGATTCAGTTTGTGTCACAAAACAATTTGATGATAATTCTAAATGTTGATCAAGTACTCCAGATGTGTGACGATGCAGCTTTAAACACCAAGACAGTAATTAAGGCTAAGATGCTTCACTGCAGAGCTACAGTATGTAATGTGTCAAGAGAGACTGAAAGAATAAAAGATGCAACTGAGAAA

Function

symbol description
iffo1 Involved in DNA double-strand break attachment to nuclear envelope; double-strand break repair via nonhomologous end joining; and protein localization to site of double-strand break. Located in nuclear matrix; nucleoplasm; and site of double-strand break.

NR:

description
intermediate filament family orphan 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805260.1 True 5521 mRNA 0.43 9 23808580 23822343

Neighbor

gene id symbol gene type direction distance location
opn9 NA coding upstream 414 23803552 ~ 23808166 (+)
gapdh gapdh,LOC102791742 coding upstream 6393 23797078 ~ 23802187 (+)
wu:fj39g12 LOC104929004,LOC100710783,LOC101474397 coding upstream 15487 23791000 ~ 23793093 (+)
ncapd2 ncapd2,LOC102792512 coding upstream 19020 23762873 ~ 23789560 (+)
si:dkey-260g12.1 NA coding downstream 981 23823324 ~ 23829685 (+)
tnfrsf1a NA coding downstream 14438 23836781 ~ 23843959 (+)
plekhg6 NA coding downstream 21734 23844077 ~ 23858278 (+)
mrpl51 mrpl51,LOC102789637 coding downstream 47294 23869637 ~ 23871714 (+)
LOC120562185 NA coding downstream 99427 23921770 ~ 23937821 (+)
LOC120561968 NA non-coding upstream 174746 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 314103 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 367354 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 454405 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 457813 23346840 ~ 23350767 (+)
G75427 NA non-coding downstream 60834 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 121150 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 149984 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 205540 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 226582 24048925 ~ 24052956 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 157084 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 237337 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 314546 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 725433 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 897060 22900089 ~ 22911520 (+)
LOC120563047 vamp1,LOC104928996 other downstream 51566 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 204572 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 234094 24056437 ~ 24073698 (+)
G75644 NA other downstream 612796 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 698392 24520735 ~ 24534276 (+)

Expression


Co-expression Network