nphs1 (nphs1)


Basic Information

Item Value
gene id nphs1
gene name nphs1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19021154 ~ 19089959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805284.1
ctttttcttcttcttacgGCAGCCGGCATCCAAAAAGTTGCATTGCTGCCATCTACGGAACTAGCACCTTAGTGCACTATATCAGAACCATAAGAAGTGAGAACACAGAGCTATCCTGGGAAATTACTCTGTCGACAGACGGCACATTGAGACTTCGTTAGCACAACCACCCAGCCTAGTGCCTCTCCAGCCCGATCCAACGGAGCAACTCTCCATGACAGAGTAAAGAAAGCAGAATCACAGGCATGATGAGGCATGGTGTAGGAGCCACAAGGCGCACACATGCGGTGTACAGGATTCATGCTGTGTGGTGAAGAGTGTGTGGAGTTCTTGCTGCGAGACTCCGAGATCATCTCTGCTCTGCCCAGGAAGCCTATGAGAGCCATCTGTAGATCAGGAAGACAAAAAGACGCTCCTGAGCCTCAGCGTCACTCAACAGGCACACATGCCCAGCAGGCCTTCAGGTCTGAGCCCAGGAACCTCACTGTGCGGATGGGAGCCACAGCCGTGTTGAGGTGTGAGGTGCTGCGGGCCTCAGGGACGGTGCAGTGGGTGAAAGATGGCCTCCTACTGGGACCACAGAGAAGCCTTCCAGGCTTTCCACGCTACAGCATGATTGGAAACCCCACTAAAGGGCAGTATCACCTTCAGATTGAGAAGGCCCAACTGGAAGATGACGCCTCCTATGAATGTCAAGTGGGCCGGTCTGAGAGCAGTCGAGCAATCATTTCCAGTACGGTCTGGGTCAACATGCTAATTCCTCCTTCCAAGCCATACTTTGAAGTGGATATGGCAACACCTTGGACAGCAGGGAAGAAATACGTTGTCACCTGTATCGCCCCTGATGCAAAGCCCATGGCTGAAATCACACTTTATAAAGATGGAGTCGAGCTGACAGGTGTAGAGTCTTTTAATATGTCTGGCTCAAAGGATAAGCTCCTGAACACGCATGCTGACGTAACGTATGTGTTTGCCCACCTGCCAGACTCATTTTTCTCACCGACCTGCTCAATATCTCCAAGTCTGTCTTTGTTTCTTGTTTCCCTTGTTTTCACCCCGCTCTtattttctccctctttcttaGTGAGTGCAATGAATTTCGGCACACAGCGAACTGTTACTTGGCACTGTGCGATTGAATTAGCTTCTGTCAAATACACAAAATTACATTCCGGCAGCGAGACAGATCCGATCCTCGCCGGTCGCCAGGTGCCTATACTCCCGCCTCAGCCTCCAGTTATTGTAGGTCTGGAGAGAGCGGAAGTCAAAGCGGGGAGAATGCTCGTGTTGGAGTGCGTGTCTCATGGTGGAAACCCCCTAGCCACTCTCCACTGGACCAAGAATGGAGAAGTTCTGTCCACGACTTGGAAAAAGGACGTTGTGGCGCAGAAGTCCATCAGTATCCTCTACCTGAAGATCACCCCCGCAGATAACCAGGCAGTGCTGTGCTGTGAGAGCGTCAATCTGGTGTCCCTGTCACCTCTGTCTGTCAGCCGCAAAATCACTGTGTTCTttgAGCCTGCAGAGGTGACACTGTTGGGTGAGTTCACGACCATCGAGGGGCAGGACTTGGTTCTGAACTGCTACACCACCTCCAGTAATCCGCCTGTTCAGATCCGCTGGTGGCTGGGCTACAAGGAGCTCGACAGCAGTGTTGCAACTATCACAGAGGGAGACAACGGTGGGATGATAACCATATCCAACATGACCCACGTGGTCTCCCGGGAGGATGATGGGCTGAAACTCACCTGTGAGGCTTTCAACAAGGGCACACACTTCTCCAAGTCTCAAGACGCCATACTCAATGTCTATTaCCCACCTCTAAAGGTGTGGCTCGATACTCCCCCTCAAGATGTCCCCCTCCGTTCAGGGACCACAGTCTGTCTCATCTGCTTCTCCACTGGAGGGAATCCCCCTGGGACTCTGACTTGGttcaagAATGGAAAAGCTTTGTCCGAtgcactgagacagacatccttTGATCGCGGTGTGGCTCGAGAACTGGTCCTGGTCCTGACGGCCAGTGACAACATGGCCACCTACCGCTGTGATGCCACAAATAAAGCAAAGAAGACAATCTCTGCCCACACTAAGCTTATGGTTAACTTTACAGCAATAAGTATGAAGATCTCAACCAAACAGCAGGAGCTACGTCGGGGTCAGATGCTTACTCTGGAGTGCCAGTCTGGAAGCAGTAACCCCAAGGCCAGCATCTCCTGGACCTTGGGCGCACTCAGGTTCCAGGGAGTGGAGCAGCCACCCAAGAGGGCTCAGTTTGGTGGTGTGTCAGTGCACAGTTCTCTATCCCTGAATCTGAGTTCACAGCATCACAACCAGAGGGTCATTTGCCAGGCCTACAGTCCTGTGCTAGCAGAGGGGGCTAACACATTCTTTAAACTCAATGTGCTTTACCCACCAGAGTTTAGCCCAGAGCAGCCAACGAAGGTTCAGGTGGTGGAGAACGACATGGCAACCATCCCACTGCTGGTCTCAGCTAACCCAGAGGAGGTCTCCTGCATTTGGCTGCACCGCAGGGAGAAGCTGGTCAAAGTGGGGTATCTGCGCTACAACTGGTCAGATGAGAACGCACTGGAAATCAGGAATGTGACGAGGAATAATGCCGGAGTTTACACGGTCAAGTGCTCAAATGATGAGGGTGTCAATCAAACCTCCGTCATGCTGGACATTCAGTATGCTCCCAGTGTCAAGGCAGAGAAAGACCCTGTGTTAGTGAACCTGGGGGAAACGGCAGACATGATATGTGTGGCAGATGCCAACCCCATTATATCTGACATGTTCTTTTGGAAATGGCTGGGAGaaggggaggtggaggtgggacAGGAGACCCAGGAAGACAAATATGGCCTTCTGACCATCCACAATGTGACTCGGGCTCATGCTGGTCTTTACCAGTGCACAGCCAATAATGGCATAGCACCCCCTGCCACTGTTGATGTGCAGCTGATCGTGCAATTCAAACCAGAGATTCAGAAAGGAGCCCAATGGCGGAAGGTAGCAAGTAGAGGGGATGGCACCACTACAGCTGAGGTTGTGTGTTGGGCAGAAGGTATTCCTCGTGTCGACTTCTCTTGGGAAAAAAATGGTGTACTTATGGACTTTGCAAACCACAGGTATGAGGAGCAGACTGTGAGTGAGGGCTCCTTCCAAACCAGCACAGTCAGAGTTATAAATGTGAGCGCAGCTCTGGACTATGCTGTCTTCAGCTGCACTGCTCGCAACTCACTTGGGGAAGACAAGCTAGACATCCAACTCGTCAGCACAAATCACCCAGATCCTCCGACGTCGTTTCGCCAAGTCAGCGTCTCCCACGACTCGGTCACTCTGGAGTGGATCCCCAGCTTCAATGGTGGTTTGCGGCAAAGATTTCGTATAAGATACCGTTCGGATCAGTCAGCCAGTTTCCTCTACATGGACGTCTTCCCTCCCAGTGCATCAACCTTCACCATCACTGGCCTGCAGCCTGTCACCACTTACAACTTCTCTGTCAATGCCCTTAATGCAATTGGAGAGAGTGGCTATGCTGACAACAATGCAGTACTCACCATCACCACCATGGCGAGGCCAGAAGAAGAAGTGCCAGAAGAGGAGAGAGGATATTTGACAGAAGTCTTGACAGTGGTGTTTGGAATCCTGCTGGTATTGAATTCACTGGGTTGCTTCTTTGGATTGAGGTGGAAAAAGAGGCGAGGCCAGACAGGGGGTAAAGGAGGCAGTGTATTGGGTGGAAAGAAGAATGAAGAGGACGGGTCCAGTCAGTCAGCTGTAAGCAATTCCAATAAGTATGAGAGCAGAGAAAAGATCAACGCCGCAGCCCAGCGCACCCTCCTACTCGACTCTGGATCTGAAAGCGACAGCAATGTCTACGAGAGCTATGCGGCGGAAAGTTCCCATTATTATTACCCCACTGGTGACTACATGCCTCCTCTCAGCCCACTCCCTGAGGAAATGCGTAGGCTCGATGTCACCCACCTCCCCTTGGACGCTCCCAGCCATCCGTATGAATATGTAAGAAACCGGGGTCTGTACCAGGACATCCTGGCTTCCCCTCTTCCTTCCCCTCCGTCTTTGTTTGACCACAGATTGTCTAATCAAAGGAACGAGTGGAGATCATCAACCTACCATCAGCAGGCTGCTGAGAGAGCGAGGGATGTTCGACAACTGCAGAGTGATTCTGATCTTCCCTTTGAACTCCGAGGTGAATTAGTctagaaggagaaggagaaggtcAGAGCACACAAATGCGCTATGACGGAGTTTGTGACTCAACAGTAGTCACTGAGTACAGTGTTGTATAGGAGATACTAAATACAatgttcctttttgttttattcctTTTGAATGGTCACCTTAAATGTACCTGTCACAAGAGTAGAATGTAGCTGAATGCTTGATGTAAAATGTCATATAATACAGTATTTCACTTTCA

Function

symbol description
nphs1 Predicted to enable cell adhesion molecule binding activity. Acts upstream of or within animal organ development; glial cell development; and glomerular filtration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Is expressed in renal system. Used to study nephrotic syndrome and proteinuria. Human ortholog(s) of this gene implicated in nephrotic syndrome type 1. Orthologous to human NPHS1 (NPHS1 adhesion molecule, nephrin).

NR:

description
nephrin

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0003094 glomerular filtration biological_process
GO:0001822 kidney development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K24496 NPHS1; nephron

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805284.1 True 4447 mRNA 0.51 31 19021154 19089959

Neighbor

gene id symbol gene type direction distance location
zmp:0000001114 NA coding upstream 65117 18934230 ~ 18956037 (+)
LOC120562037 NA coding upstream 208782 18809356 ~ 18812372 (+)
LOC120562797 ctrl coding upstream 212740 18806002 ~ 18808414 (+)
hsc70 LOC103359601,LOC103478507,LOC104932369,LOC106945881,LOC102237422,LOC106517696 coding upstream 215855 18800355 ~ 18805299 (+)
si:dkey-238d18.4 LOC104961375,LOC103359602 coding upstream 221703 18790625 ~ 18799451 (+)
fxyd5 NA coding downstream 5509 19095468 ~ 19101074 (+)
LOC120561940 NA coding downstream 26634 19116593 ~ 19120701 (+)
LOC120562624 fcgbp coding downstream 39565 19129524 ~ 19147793 (+)
LOC120562651 tyrobp coding downstream 103516 19193475 ~ 19194806 (+)
LOC120562955 LOC102233830,LOC107102542,LOC103371668,LOC108241910,LOC101156432,LOC107378666,LOC101063201,LOC103388495,LOC102205547 coding downstream 108561 19198520 ~ 19204699 (+)
G73501 aplp1 non-coding upstream 88981 18911394 ~ 18932173 (+)
G73499 aplp1 non-coding upstream 109938 18908503 ~ 18911216 (+)
G73493 NA non-coding upstream 147197 18872374 ~ 18873957 (+)
G73484 NA non-coding upstream 205557 18813309 ~ 18815597 (+)
G73377 NA non-coding upstream 270355 18750345 ~ 18750799 (+)
G73568 NA non-coding downstream 35197 19125156 ~ 19125848 (+)
LOC120562630 NA non-coding downstream 58562 19148521 ~ 19158369 (+)
LOC120562629 NA non-coding downstream 68516 19158475 ~ 19159018 (+)
LOC120562631 fxyd7,LOC103388498 non-coding downstream 69505 19159464 ~ 19162804 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding downstream 182768 19272727 ~ 19276516 (+)
kmt2bb kmt2b other upstream 159196 18833245 ~ 18861958 (+)
proser3 NA other upstream 192466 18819201 ~ 18828688 (+)
LOC120562824 NA other upstream 274479 18744662 ~ 18746675 (+)
LOC120562819 NA other upstream 365423 18652386 ~ 18655731 (+)
LOC120562796 NA other upstream 383847 18632402 ~ 18637307 (+)
G73570 LOC103371659 other downstream 58654 19148613 ~ 19158995 (+)
hcst LOC104925504,LOC104961397 other downstream 100061 19190020 ~ 19192102 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 357208 19447167 ~ 19453283 (+)
G73779 hdac9 other downstream 557016 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 1102731 20192690 ~ 20209327 (+)

Expression


Co-expression Network