LOC120561940


Basic Information

Item Value
gene id LOC120561940
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19116593 ~ 19120701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805285.1
ATGGCGGAGATGGAGCATTTGGGAAAAGTAAAGGCCCTTCTTTCTGTGGACCCTGAGCCCTTCTTTCACAACTGTGTGATTGACTTGTGTATGTCTAATGGGAATGAAGAATTGTTTTGCGGTAGTTTGAGAGAGTATACTTTTGCATGCCAGGAGGCAGTAGCTGAGGCCAAAACATGGAGGGGTGAGAAGTGCTCACTCTCATGCCCTGAACACTCTCACTATAATATATGTGTCAGTGCGTGCCCTGAGTCCTGTGGTATTTTATCCGATATCCCCTGCCCATGGGCCTGTTACGACGGATGTCAATGTGAGTCAGGATACATGCAGAGTGGAAATGGCTGCGTCAAAGCTGAGCAATGTGGTTGCTTTTACCTTGGGCACTACTATGAGATTGGGGAGCTATCGTGGGATGAGGGCTGCTCTGAGCGGTGTAACTGCTCTGCCACTGCTACAATGCGCTGTGATCCAGCCTCTTGCCCCGAGGGAGAGAGCTGCACCCTTAACAATACCTGGGGCTGTGCAAGGGAAGATAAGATGTGAAAATGGAGTGAATTGTGGTGTCCAGAGCCAACCTCTGCAAACCCAGTATTGGGTACTGGGAGGCGCCCACTTTTAAACTTTTGATGGAAAGGTCTTTGAATTCCAAGGAAACTGTACCTACATGCTGATCCACATATCCAATGACACCAGTGAGAATATAACATTTTGGGTTGGGGTACAGAAAGACAGGAACTCCAATTAGTCTTCCTCTCTTAAAGCTATTCACGTCAAAGTAGTTAAAGACACTAGTATTACCATCTACAGAGGGGGAAAAGGCTATGCTTTGATAAATGGCGAGAAAAGGCTACTACCCGTGACTCTACAGTTTGGACTCGTAAAGATCTATCAgtggcatttttgtttttgtggattCTAACCTGGGCATCCAAATTAAGTATGATTGCTCTCATACTGCCACTATCCTCCTTTCTACTACAACAGAAGTCCATGGCATGTGTGGTAATAATAATGGCATCAAGGAAGATGACCTCAGGACCCCCGAGGGTGAGGCTGTTGATGCTGCCACCTTTTGGCTGGAGAGTTTCTGATCGGGAAGCTCGGTGCACAGCAGATTGTGGAGATGCATGCCCACTTGCTCTTCTGAGCAGCTGCTGGAGAAAAATGTAGCCAGTCAATGGATCGCCATGCACGAGTACATTTGGTCACCACAAAATCCATTCTACCTGTGCCTGGAAGTTAACTACACTAAAATCTCTGCAGCAGTCAGCCTATTTGACCTTTGCTCTACTGATGACACTCAGAAGGTCCTCTGCCTGGTCTTGGAAGCCTATGCTGCCGCCTGTCAAAATGCCCAGATCCAGATCGGAGAGTGGAGAAATGGCACCTTCTGCCTTTTTCCTCCCATATTGTTAATTCTCATTCGCTCCATCATCTGTTTCCTGCCCACTGAATGGCCATTATAAGTCCTGTGGCTCAGCCTGCCCTGCCACCTGTGAGGACCCATTCAGCGCAAG

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0015929 hexosaminidase activity molecular_function

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series
ko00511 Other glycan degradation
ko04142 Lysosome
ko04614 Renin-angiotensin system

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805285.1 True 1517 mRNA 0.48 7 19116593 19120701

Neighbor

gene id symbol gene type direction distance location
fxyd5 NA coding upstream 15519 19095468 ~ 19101074 (+)
nphs1 nphs1 coding upstream 26634 19021154 ~ 19089959 (+)
zmp:0000001114 NA coding upstream 160556 18934230 ~ 18956037 (+)
LOC120562037 NA coding upstream 304221 18809356 ~ 18812372 (+)
LOC120562797 ctrl coding upstream 308179 18806002 ~ 18808414 (+)
LOC120562624 fcgbp coding downstream 8823 19129524 ~ 19147793 (+)
LOC120562651 tyrobp coding downstream 72774 19193475 ~ 19194806 (+)
LOC120562955 LOC102233830,LOC107102542,LOC103371668,LOC108241910,LOC101156432,LOC107378666,LOC101063201,LOC103388495,LOC102205547 coding downstream 77819 19198520 ~ 19204699 (+)
LOC120562665 NA coding downstream 84897 19205598 ~ 19211398 (+)
LOC120562666 LOC102206297,LOC106517725,LOC104965579 coding downstream 90794 19211495 ~ 19220952 (+)
G73501 aplp1 non-coding upstream 184420 18911394 ~ 18932173 (+)
G73499 aplp1 non-coding upstream 205377 18908503 ~ 18911216 (+)
G73493 NA non-coding upstream 242636 18872374 ~ 18873957 (+)
G73484 NA non-coding upstream 300996 18813309 ~ 18815597 (+)
G73377 NA non-coding upstream 365794 18750345 ~ 18750799 (+)
G73568 NA non-coding downstream 4455 19125156 ~ 19125848 (+)
LOC120562630 NA non-coding downstream 27820 19148521 ~ 19158369 (+)
LOC120562629 NA non-coding downstream 37774 19158475 ~ 19159018 (+)
LOC120562631 fxyd7,LOC103388498 non-coding downstream 38763 19159464 ~ 19162804 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding downstream 152026 19272727 ~ 19276516 (+)
kmt2bb kmt2b other upstream 254635 18833245 ~ 18861958 (+)
proser3 NA other upstream 287905 18819201 ~ 18828688 (+)
LOC120562824 NA other upstream 369918 18744662 ~ 18746675 (+)
LOC120562819 NA other upstream 460862 18652386 ~ 18655731 (+)
LOC120562796 NA other upstream 479286 18632402 ~ 18637307 (+)
G73570 LOC103371659 other downstream 27912 19148613 ~ 19158995 (+)
hcst LOC104925504,LOC104961397 other downstream 69319 19190020 ~ 19192102 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other downstream 326466 19447167 ~ 19453283 (+)
G73779 hdac9 other downstream 526274 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 1071989 20192690 ~ 20209327 (+)

Expression


Co-expression Network