tmem106ba (tmem106b,LOC103368608)


Basic Information

Item Value
gene id tmem106ba
gene name tmem106b,LOC103368608
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31426759 ~ 31435057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805332.1
taggaagaggagggaggcgTTCCCCTCAGCTTCATTCTCCATTGGTGTGTTGATCAcaacagcaaacagccagcGACGATACAACGAATGTCAAACAAGTAAAACACTAAACAGAGAGCTGCAGCTATGGGCAAGTTCCATTCTCACTTGGCCCACCCCAAAGACGAGAGTCAGGACGCACTGACGGCTTCTGGAGAGTACAGAGACGGCGAGGAGGATGGAAAGAACGGAGACGTATCTCAGTTCCCCTACGTGGAGTTCACTGGACGGGACAGCGTCACGTGCCCGACATGTCAGGGCACCGGCAGAATACCAAGAGGTCAAGAGAATCAGCTCGTGGCTCTGATTCCATACAGCGACCAAAGGCTCAGGCCGAGCAGGACAAAGCTGTATGTCACGATATCAGTGGTACTTTGCCTGCTGCTGTCTGGCCTGGCTGTTTTCTTCCTATTCCCTCGCTCTATTGATGTCTCCTATGTGGGAGTGAAGTCCGCCTACGTCTCCTATGACTTGGAGAAACGCATTGTTTATCTCAACATCACAAGCACTCTGAACATCACCAATAACAACTACTACACCATATCTGTGACCAACATCACAGCCCAAGTGCAATTCTCCAAGACGGTGATCGGGAAGGCCAAGTTCAACAACAGCTCAGTGATCATACCACTGGATGAACGGCAGATTGACTACACAGTTCCCACCACCATCGCTGATGAGATGAGTTATATGTTTGACTACTGCACCTTGCCAACCATTAAAGTTCACAACATAGTGGTCATGATGCAGGTGACTGTGACTACGTCATACTTTGGCCATGCGGAGCAGGTCTCCCAGGAGATGTACCAGTACGTGGACTGTGGGGGGAACACCACCTCCTTGCATGGACATGTGCAGGTCTACAAATAAAGGAAGCAAAAGAGCCCAGACATCAAATACTGCTGTGACTGAGAGTCTCACAGAGATAACTGGGCTGATTTCCACATAGAAAAGCTTTGCTCAGTGACAACGGAATAATGGACAGACATAACTTTTCTTAAACTAGTCAGTGGCTCATCCATTCTTTGATTCCCAACCACTTTCTTCCTTTTACAGGTCAAATGTGATGAGTAGAGGAGCTGTTTTTGTTTGGTTACTTGTCAAACAGGCTGGTAAAAGCAGACAAACTTGGCTGCCACAGCCAGAATTTTGCAGGCTTTGCCCTTGaggtttgttgtcatttttcacCCTGGTGCCAACAAAATAGACGGATATACggtaattaaatattttttattggtTGACATTCCCATCATGTTTACACAGTTTCTCCCTAACAATTAAATTACTGAAAGCAGTAGTTTCAGATATGATGCACTTTAACCCGATCCTTATTTACAGATATAGATAAGAATGTTGCTTAAGTGCCCCCCTACTACTTTATACCACTTTTAATGAAAAATTCAATAACTAAGGTTCAAAAGTGAAAACCACTGAGTTGTTCCTAACCACCTTTTTCTGccctctttcctttcttttttattttctttaataaaaattTGATTCTTGATATTGTGTATTGCAATATAGATGACGTTTTATCttatgtgatttgtttttttgtttgctttttggcTCAGAGTTCTTTGTTTTAAGCTTGAGTATACAGTAGGTAGTAGAAGTCTTATGTTTAGCTATCATTCACCTGAGATTGAAAAACACGTGACTACTACTGTGTGAAGACTGCTACATATTATAAAATAACTCTGTAAAAGGGATaacttaattttttattttatttcatagcAAATGTAGGAGCATTATAGTGGGCtataaaatacagaaatgtaaatgttaaatATGTACTTTTTTTGGCTTGCTTCAAAACATGTTATATCAAGAATCATTTCTGATGTAGGAGCACCTTTTAATAAGGTTGTTCTATTTTTGTGGGCTATGGTGTTATTCACGATAAATGTTTTGCTATTTTAACCCACTGTATATATAACTTGTATCATGAGTTGAGTGGTATTCTTGGGGTTTGAAATTAGTatgacttttgtcacttttattacTTAGAATCATTTTGGATTGGCTGACAAAGCTCAGAAGTGAATAAACCCAGCATTCACGTACTATGCTaatattctacatttttaaACCTATGTATTGTACTGAACAGCATTTGTCTGATAATAGACGCCCCTAACACATTTGCccgaaaaatattttttcaaagtttctgaTCTTAGTTCATTTGTGATCGCACATGCAAGTTTTTCTGACAGTTAATACAATGCTAATAATATCCAGTCATAAGAAAACTAACCATAGATCCACTCCTTGGTTTTTGATGACAGACGGTGTAGATATGAATATCTCTCTGTTACACTGTCACCTCTACACCTACACTgtggttttgtgtttttcatgcatgaagctgaaaataaaatcatgacttta

Function

symbol description
tmem106b Enables ATPase binding activity. Involved in dendrite morphogenesis and lysosome localization. Located in endosome and lysosomal membrane. Implicated in hypomyelinating leukodystrophy.

NR:

description
PREDICTED: transmembrane protein 106B

GO: NA

KEGG:

id description
K25048 TMEM106B; transmembrane protein 106B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805332.1 True 2442 mRNA 0.40 8 31426759 31435057

Neighbor

gene id symbol gene type direction distance location
LOC120561996 LOC102798925,LOC101475373 coding upstream 225499 31176789 ~ 31201260 (+)
mios mios coding upstream 251374 31163419 ~ 31175385 (+)
si:dkey-256h2.1 NA coding upstream 295675 31114749 ~ 31131084 (+)
sept7b LOC103370332,LOC107379178 coding upstream 342242 31065765 ~ 31084517 (+)
LOC120561533 rarb,LOC102205684,LOC101478141 coding upstream 382352 31024984 ~ 31044407 (+)
vwde wif1 coding downstream 9731 31444788 ~ 31449451 (+)
si:dkey-30e9.6 NA coding downstream 61986 31497043 ~ 31498486 (+)
arl4aa arl4a,LOC103374731,LOC104928894 coding downstream 65773 31500830 ~ 31504662 (+)
LOC120562640 NA coding downstream 482689 31917746 ~ 31932047 (+)
pkdc LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972 coding downstream 508354 31943411 ~ 31947773 (+)
LOC120562710 NA non-coding upstream 410312 31015133 ~ 31016447 (+)
LOC120562708 NA non-coding upstream 438026 30978327 ~ 30988733 (+)
G77399 NA non-coding upstream 449678 30976741 ~ 30977081 (+)
G77260 NA non-coding upstream 1024055 30398276 ~ 30402704 (+)
LOC120562235 NA non-coding upstream 1208156 30216748 ~ 30218603 (+)
G77555 NA non-coding downstream 79079 31514136 ~ 31514561 (+)
G77554 NA non-coding downstream 82706 31517763 ~ 31518618 (+)
G77558 NA non-coding downstream 90126 31525183 ~ 31525583 (+)
G77591 NA non-coding downstream 176001 31611058 ~ 31611311 (+)
G77592 NA non-coding downstream 177424 31612481 ~ 31614315 (+)
G77447 NA other upstream 290613 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 695150 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1066171 30351495 ~ 30360588 (+)
G77239 NA other upstream 1302121 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 1317214 30073937 ~ 30109545 (+)
G77682 tbx20 other downstream 541261 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 970076 32405133 ~ 32421472 (+)
G77888 NA other downstream 1665356 33100413 ~ 33101534 (+)
bmper bmper other downstream 2391030 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 2459303 33894360 ~ 33904285 (+)

Expression


Co-expression Network