fdps (fdps)


Basic Information

Item Value
gene id fdps
gene name fdps
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22289236 ~ 22295905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805333.1
tCGCTCTTGTTTACTGAGTTCAGTGGACTAAGAGACCATGGAGCGAACTACGTTGGTAGAGTTAGTTTTCCTCAACCGAAACAAATGTAACGTTATATGGTTTAGCGTTAGTTACGTTACTGCTAGCTAATGTTGCAGTCCGACATGTTTGAGCTAAGCTTGTTTACGGTTAGTCAGAGATTTTGGACGGTTGGTTGAGAATGAGCCGTCACCTGAGCTTGATCATTAATGCCCCTAAAATAATCCGGACCATGTGGAAGGCCGTGTTCCCTCTTAAATTAGAAACCACACCTATTCTGCTGTGCATCTCGTCTTTCCAGGGGGACAGCAATTGCAATGGGACGCACAGCAACAAAAAAGCGTTACTGTCAGATCCTCAGCTGTTTGAAGCCCAGTTTGATGAGCTGGTGACGGAGCTTTCAGAGAGGGACTTCGCCGACCCTGCGCTGGCTGATGCTCTGGCCAGGTTGAGAGAGGTTTTGGTGTACATCCCTGGAGGAACAGGACGCGGAAAAATCTGCACGCGGGCTCTGTTGGTTGGCTGGTGCATTGAGTTGCTTCAGGCCTTTTTCCTGGTGGCAGATGATATCATGGATGGATCTGTGACCCGGAGAGGACAGCCCTGCTGGTACAAAAAGgaTGGCATAGGTCTGGATGCGATCAACGATTCATTTCTCTTAGAAGGGTCAATCTACAGACTGCTTCGGAGACATTGCAGGGATCAGCCCTATTACGTTCGCCTACTAGAGCTATTTACTGAGGTAACTTTCCAAACAGAGCTTGGCCAAGCTCTGGACCTCATGACGGCTCCCCCTGGTCAGGTTGACCTCAACAGATTCACCATTGAGAGATACAAAGCTATTGTGAAATACAAGACGGCCTTTTACTCTTTTTATCTCCCAGTGGCAGCTGCAATGTACATTGCAGGGATTGAGAGTGAAGTGGAACACAATAATGCCAAAAACATCTTACTGGAGATGGGAGAGTTCTTTCAAATACAGGATGACTACTTAGACTGTTATGGAGACCCTGCTGTGACAGGAAAGATTGGTACAGACATCCAAGATAACAAATGCAGCTGGCTGGTGGTGACGGCCCTGGAAACCATGACCCCTGAACAGCGAGCAGAGCTGGAGGGATGTTACGGGCGCCACGATGATGCCTGTGTGGAAAAGGTCAAAGCACTGTACAACACCCTGCAAATGCCAACACTGTACCACAAATATGAGGAAGAGAGCTACAAGCGGCTACAGAAACTCATCGCTTTACACGCTCAAAACCTTCCGCACTCAGTCTTCCTCAACTTCGCCGAGAAAATCTACAAGAGGATCAAGTGAGAGGGAAAGGTGGTCATAAACCGCGTCAGGTGCATCATTGGGTTCCCTTTTGACTTTTATCATGCTGCACAGATCAACTCCTTTTGTTTCTCCACTGCCAACATCATGATCTGAACAGCACATAGAAATCAGTTTCTTAACTTAACTTGGTTTGTGGATGTTTGGTTGTGAATGTCATCAAACAgccttcctcttttgctccataATACCTATTTATTGAACCCAGTACATAATGTAGAGTGTCTTCAGGTGTTTCTCCCCAGAAGAATCCCATGGATAAAAGGAAGACACTGAAATGAATCGCACATCGTCTAGCAGCAGGATGAAGATAGATAATCGTAGCAGTTATTATGGTGTAGGAAAATATAAAGTCTGTACTGGCCTGAATGTTATTGcttttaataaataatgtataaacagtg

Function

symbol description
fdps Predicted to enable dimethylallyltranstransferase activity and geranyltranstransferase activity. Predicted to be involved in farnesyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human FDPS (farnesyl diphosphate synthase).

NR:

description
farnesyl pyrophosphate synthase-like

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805333.1 True 1759 mRNA 0.46 10 22289236 22295905

Neighbor

gene id symbol gene type direction distance location
rab13 rab13 coding upstream 10337 22273092 ~ 22278899 (+)
adar adar coding upstream 105808 22167465 ~ 22183428 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding upstream 164799 22121704 ~ 22124437 (+)
s100a10b LOC104962190 coding upstream 173676 22114119 ~ 22115560 (+)
krtcap2 krtcap2 coding upstream 176174 22110516 ~ 22113062 (+)
dap3 dap3 coding downstream 36511 22332416 ~ 22338933 (+)
gba gba coding downstream 43724 22339629 ~ 22345550 (+)
polr3c polr3c coding downstream 61886 22357791 ~ 22366153 (+)
LOC120562192 LOC104934671 coding downstream 152614 22448519 ~ 22455722 (+)
prpf3 prpf3 coding downstream 165226 22461131 ~ 22469782 (+)
G74769 NA non-coding upstream 33758 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 43473 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 46203 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 105199 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 159322 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 622847 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 628687 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 686987 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 698515 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 720902 23016807 ~ 23018595 (+)
fam189b fam189b,LOC102796117 other upstream 942 22279556 ~ 22288294 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other upstream 40709 22197712 ~ 22248527 (+)
snx27b snx27,LOC102196713,LOC102288812 other upstream 134552 22139780 ~ 22154684 (+)
LOC120561537 NA other upstream 150013 22137547 ~ 22139223 (+)
LOC120561539 NA other upstream 153002 22132578 ~ 22136234 (+)
rprd2b NA other downstream 174073 22469978 ~ 22489944 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other downstream 264039 22559944 ~ 22585572 (+)
arnt NA other downstream 314113 22610018 ~ 22625953 (+)
LOC120562537 NA other downstream 364574 22660479 ~ 22667885 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other downstream 393165 22689070 ~ 22705416 (+)

Expression


Co-expression Network