pnrc2 (pnrc2,LOC100697533,LOC104941893,LOC101487357)


Basic Information

Item Value
gene id pnrc2
gene name pnrc2,LOC100697533,LOC104941893,LOC101487357
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27351851 ~ 27355833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805412.1
TCCATTTTGTTGCAATTCAGACGGAGTCGGGAGATAGAGAAGTGGCGTCATAGGGCTACTTTTAACAccacacaacagctaactaatCTTCAAGGGTGACAGATGTGTAGGAAATATAGCTTGCTGTGCTTCCTTACGTAGTCCACCGAGGGGTCGTAAAGGCTAATCGCATATTTTCCCGGACGAAGGGCTTTTTAACACCCAAGCCTGAGGAAGTCGAGGTTTTCGGCTTCTTGGATCATCGTGTGCCGAGGTGAATTGATGTTCAGCTCGGCTCAACGGGAAAACTACGCTCATTGGCACATGAAAGCTTCAGACCTTGCTGGACACAGAAGTACAGCGAGAAGTAGACAGAAAACTACTTCGAGGAACTGGGACCCGATTGGAGGTGAAATATTGAGGAGAGACTTCATCAACTTTCTGACAACAAAGAGGTGACACGTAGTGCAGACGCATTAtgggaggtggagagagataCAACATTCCAGTTTCCCACCATGAGCGCCCGCTTCCCAAGAAGAACCATCAACTTGGCCGCGCTAAGCAGAGAAGCCGTGACCAGAACGGAGCACCAACTTCTGCAGGCGGGGCAGGTGGCCTTCATCATCATGGCCACCGCCGGAGCGACAAAGGCGCAACATACCACAGGTCTCCAGAGGCGCGGCAGGCCGCGTCTGCAGAGAAGAATGCTTCTGATCGCTTTGCCACCAACTATGATCACAACTGGGAGGGTGCAGTGTCTCACCTGAACACGCTCCTGGCCACACAGGGAAGTCCGAGCTATGCAGGGCCTAAGTTCAGCGAGCCACCCTTGCCTAGTGTGTTGCCCAAACCCCCCAGCCACTGGGTGTCCTTCCCAATGGGCTCCTGTGACAACAGGGAGATGATGGCCTTCCAGCTCAAGAGTCTCCTCAAAGTGCAGGCCTGAGAGGCATACCCACACTTAAAAGAAAAGCCAATGTAAGAACTGGGACTCTTTGAGGGCACCCACCCACCAGGAACACCTCAGTGCTGTAATCcttttttagctgtttttagATTGAACTCTGTGTTAGGAGGCATTTGCAGTAATGCAAAATGTTTATTCAACACTATTTTTAGACTAATATTTTGAGATTACAGCCTTGGAGCCTTGCTGGTCGGTAATGCCTTTAGTGGAGTCAGTTTCTGTGACTAATGACAAACTGGATATCCTTTCTACttctgttttgttctttttaatGTTGGCTGTCAAAGCAGTTTGAGTGTGCTTTTTTCCCTCCCAAACAAGGGTTATAGTATAGGTCAGGTAAATTCCCATCACTTTTACAGTCCATTTCTGTGGACAGacatgcttttttatttttagtttcatgATAAGCCTTTATGGTCGCCTCCTTAAAGCTTAAGGTGCTAAAGCAAACTCACATTTGTAGCAATTGTTTTTTGACTAGGACCCACCTTTTCTTGTATGGATCACAATCCTTGTTTGGGATGAAAAAGACACTCGACTGCAATTCTGCAGGGAAAAAAAGCTATCTGACTGGAGGTAATACGGTGTACAGTACAGGTCAAAGTATAACCTCAAACCGAAGGGTAAAAAGAGACCATGGCACACAGGCCTTGGACGGTTGACTCCTgtacttcttttttatttctttttttttttttattgcgcTGTGCGCACATGCACTATAGGAGTTGAGCTTGTCTGAGGCCCATAACGCTCTATCATAGCATTATTTTGTACAAGTCCTTTATTATTGTGGTTGAAAGATGTATGAAGTGCTGTGTGTAACCAAAGCAATGtttttgctgtatttttttttttttccttctctgttTTGGACATCGTGTGTGGTCGGCATTATTGCCATTGCCACTTTACCTTGCCAGCCCGAGTGGTGAATGGTCAGGGTCCCCAAAGTCACTTCTAACTGTTCATCGTTCAATCAGTGCTGTTATTGCTCCCCAGTCTCAGCTTTTTCAGGACAATGCTGCAGCTTTAACACGCGGAAGAGGGCCAGGCTTAGCTGTGTGACTGTTAAGTTCCACTTTCTCTCTGTCATGGTCCTGTTGTTGGCTGCACGCATTTGTAAGCAAGGTAAGGCAGAGCTGAGGGAGGTTTCTGAAGCGAAGTGACCCCAGGGACTCAACATGAGGCATGAGGCTGGTGTTATGTTTACAAAATAGGTCTCAGTGGTTGACCATCCCATAACTCTATGCCTCTTGCCTCTGCCTCTTGTTTACCCTCTTGCACTGCAATCAGACTAGTGTTAATAAGTTACAGGCCAGGATGCTATTGAAATGATGGAAGCGTAATTGACTATCTCCCTATGGATTCTCTATTTTTGTGATTCAATCCTCTGAGGCTCTTTTTGCTTTCCCCTTGCAGAATTGGTGTGGTTTTTGGCCAGCTTAAAGATGACAAAACAAAGTATGAGAGCTTGTTGGTGTTCAAGAGCCatgtaaataatgaaatgtaaaaaaaagtacttGTAGCATATGTACATTTGCAGGCCGAGTTTGAGGCCTGTCTGACAAAAGTATTTTTAGTAAATAACACTGAATGTATAAGACATGCTAAGGCCATGTCTTGACTTCAATGTCTTGACTTCAATACTGAagaatatttttgttaaaaaaaatgcctaTTGCATTTCTCAGAACCCCCTGCACTGTAATCTTTCCAGAGATCTTGCacatgttttttattgttttgtattatgCAGTGTAGGGTGAAATATGCTACGGGCAAATTAAGTAAGACTGCAAAATATCAATTGGATCCTGGAGGAGACTTGCCTATGTATGAATTCGAGTTGTGAATGTGCTTACGTTATGTAAGCGTGATGCTTTTAATTTTGAGTTGACCTGTTTGTGCCTAAGTTGAAATCCATGCTGAAACTGACTATTTTCATTAGGTGGCAATGCTACAAATTGACCAATTATCATCACACCATCTTCAATTCTCAGCTGTTCTTCCGCCAGCTGACAACTGAACTTGGCCCCATGCTGTTTAGGTTTTAGTTACTATTTTGTTGTTCATGTGAAGTTTCTTTCTTGCTCTGATTGAGTCATTCATGGCAGTCTCCTTTATTCTAAATTTGAAATGTGTAATgaattggcttttaatttgtcCCCCTGATAAATGTCACTgaagatgaaaagaaaatgcCCTGTTTAAGATTAGTAACAATTGGTGTGTAAAAGAAAGCAATCTGTGAATTGATGACAAATTTGaccaaaaataataaatccCTTTCCCTCCCCCCTA

Function

symbol description
pnrc2 Acts upstream of or within nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Is expressed in nervous system; otic vesicle; and trunk. Orthologous to human PNRC2 (proline rich nuclear receptor coactivator 2).

NR:

description
proline-rich nuclear receptor coactivator 2

GO: NA

KEGG:

id description
K18751 PNRC2; proline-rich nuclear receptor coactivator 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805412.1 True 3256 mRNA 0.44 3 27351851 27355833

Neighbor

gene id symbol gene type direction distance location
LOC120561567 mycbp coding upstream 46845 27303310 ~ 27305006 (+)
utp11 utp11 coding upstream 336749 27013093 ~ 27015102 (+)
rspo1 rspo1 coding upstream 396567 26943236 ~ 26955284 (+)
dnali1 dnali1 coding upstream 462016 26886568 ~ 26889835 (+)
eva1ba eva1b,LOC104941913 coding upstream 626761 26712449 ~ 26725090 (+)
si:dkeyp-97a10.3 NA coding downstream 691810 28047643 ~ 28059160 (+)
LOC120562747 LOC103369304,LOC107379318,LOC104956022,LOC100707205,LOC107082966 coding downstream 718357 28074190 ~ 28077263 (+)
etfb etfb coding downstream 907034 28262867 ~ 28272836 (+)
vsig10l NA coding downstream 918240 28274073 ~ 28279197 (+)
LOC120562954 LOC103375369 coding downstream 991777 28347610 ~ 28354162 (+)
G76437 NA non-coding upstream 21811 27327078 ~ 27330040 (+)
G76419 NA non-coding upstream 60419 27290168 ~ 27291432 (+)
G76418 NA non-coding upstream 79024 27272558 ~ 27272827 (+)
G76412 NA non-coding upstream 294846 27056783 ~ 27057005 (+)
G76393 NA non-coding upstream 335744 27015140 ~ 27016107 (+)
G76426 NA non-coding downstream 6446 27362279 ~ 27363012 (+)
G76450 NA non-coding downstream 146123 27501956 ~ 27502357 (+)
G76451 NA non-coding downstream 164859 27520692 ~ 27521513 (+)
G76445 LOC103356458,LOC107729795,LOC105006133 non-coding downstream 200011 27555844 ~ 27565331 (+)
G76464 NA non-coding downstream 429362 27785195 ~ 27790404 (+)
G76417 NA other upstream 63394 27284538 ~ 27288457 (+)
G76355 snip1 other upstream 465305 26883450 ~ 26886546 (+)
G76315 NA other upstream 536460 26808118 ~ 26815391 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other upstream 704236 26645384 ~ 26647615 (+)
G76192 NA other upstream 1209224 26139901 ~ 26142627 (+)
fam110d LOC104924711,LOC103367059 other downstream 511611 27867444 ~ 27885464 (+)
G76511 NA other downstream 593050 27948883 ~ 27952580 (+)
ago1 ago1,LOC102230823,LOC103367053,LOC107379324,LOC103388087,LOC107082980,LOC101466039,LOC104959479 other downstream 606857 27962690 ~ 27983714 (+)
LOC120561771 LOC103367052,LOC101466533,LOC107379323,LOC100706402,LOC103139281 other downstream 628220 27984053 ~ 28027526 (+)
G76581 LOC101157563,LOC103369309 other downstream 885950 28241783 ~ 28245161 (+)

Expression


Co-expression Network